Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 3.7e-157 558.1 277 100.0
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 8.5e-146 520.4 277 93.9
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.1e-132 476.9 297 81.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 2.7e-131 472.2 300 80.7
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 9.5e-129 463.8 287 81.9
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 4.7e-128 461.5 301 79.4
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 8.0e-128 460.7 296 80.1
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 5.2e-127 458.0 296 79.7
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 5.2e-127 458.0 297 78.5
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 9.8e-126 453.8 293 79.5
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.7e-122 443.0 290 75.9
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 5.0e-122 441.4 290 76.2
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.1e-121 440.3 282 78.7
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 4.7e-120 434.9 261 81.6
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.4e-119 433.3 253 83.0
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 3.1e-119 432.2 266 79.7
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 5.2e-119 431.4 266 79.3
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 5.8e-118 427.9 249 81.9
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 7.5e-118 427.6 245 84.1
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.5e-118 427.6 285 74.0
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.5e-118 427.6 285 74.0
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 9.8e-118 427.2 246 82.9
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.2e-117 426.0 244 83.2
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.9e-117 425.6 252 80.2
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.9e-117 425.6 242 82.2
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 8.3e-117 424.1 245 82.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-116 423.7 246 82.1
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.1e-116 423.7 243 84.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.4e-116 423.3 246 82.1
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.4e-116 423.3 244 83.6
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.4e-116 422.5 242 84.3
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.2e-116 422.2 249 81.1
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 3.2e-116 422.2 242 84.3
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 4.1e-116 421.8 248 81.5
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 9.2e-116 420.6 248 81.9
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 9.2e-116 420.6 242 84.3
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 9.2e-116 420.6 242 84.3
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.6e-115 419.9 245 81.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.7e-115 419.1 245 80.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 2.7e-115 419.1 255 79.2
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 4.6e-115 418.3 242 81.8
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 4.6e-115 418.3 246 82.5
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 4.6e-115 418.3 247 81.8
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 4.6e-115 418.3 245 81.6
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 6.0e-115 417.9 255 79.2
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.3e-114 416.8 240 84.2
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.7e-114 416.4 262 77.1
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.0e-114 415.6 246 79.3
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 3.0e-114 415.6 264 76.1
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 3.0e-114 415.6 242 82.6
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 3.9e-114 415.2 245 81.6
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 6.6e-114 414.5 260 76.5
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 6.6e-114 414.5 242 83.1
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 2.5e-113 412.5 242 80.2
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.5e-113 412.5 249 77.1
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 3.3e-113 412.1 246 78.9
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.3e-113 412.1 252 77.8
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 4.3e-113 411.8 246 80.5
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 7.3e-113 411.0 242 79.3
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 9.5e-113 410.6 251 76.1
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.2e-112 410.2 250 80.0
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.6e-112 409.8 242 78.9
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.6e-112 408.7 244 77.0
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 4.7e-112 408.3 250 76.4
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.1e-111 407.1 249 76.7
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 2.3e-111 406.0 264 74.6
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 4.0e-111 405.2 242 78.1
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 5.2e-111 404.8 242 80.2
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 5.2e-111 404.8 249 77.1
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 8.9e-111 404.1 245 78.0
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 8.9e-111 404.1 248 77.8
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.5e-110 403.3 242 80.2
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 2.0e-110 402.9 242 78.5
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 3.4e-110 402.1 242 78.1
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 5.8e-110 401.4 241 78.4
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 7.5e-110 401.0 246 76.8
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 9.8e-110 400.6 261 75.9
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.9e-109 399.1 242 78.1
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 4.9e-109 398.3 246 76.4
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 8.3e-109 397.5 242 77.3
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.4e-108 396.7 253 74.3
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 4.1e-108 395.2 246 75.6
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.2e-107 393.7 243 78.2
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 5.1e-106 388.3 246 76.0
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.5e-105 386.7 242 75.6
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.5e-105 386.7 250 73.6
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 9.5e-105 384.0 274 70.1
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.2e-104 383.6 242 74.0
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 6.2e-104 381.3 242 73.1
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 4.4e-102 375.2 262 71.4
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 9.9e-102 374.0 242 76.0
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 4.9e-101 371.7 257 71.6
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 4.9e-101 371.7 336 59.2
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 9.2e-100 367.5 234 76.9
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 2.3e-98 362.8 246 70.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.1e-97 360.5 380 53.7
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.9e-97 359.8 250 70.8
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 9.6e-97 357.5 215 78.6
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 6.2e-96 354.8 220 76.8
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.4e-92 343.6 247 65.2
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 3.2e-92 342.4 249 68.7
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 7.1e-92 341.3 246 69.1
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.6e-91 340.1 274 62.4
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.1e-91 339.7 212 73.1
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.7e-90 336.7 259 66.0
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 8.7e-90 334.3 259 67.2
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 5.8e-86 321.6 212 75.5
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 4.9e-85 318.5 241 61.4
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.9e-84 316.6 227 67.8
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 6.2e-80 301.6 191 74.3
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.4e-79 300.4 233 65.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.0e-78 296.6 167 86.2
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.8e-74 283.5 212 63.7
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.5e-73 280.4 246 54.9
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 7.6e-70 268.1 176 75.6
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 5.5e-68 261.9 164 76.8
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.5e-65 253.8 253 53.8
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.5e-65 253.1 248 50.0
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 3.3e-65 252.7 224 59.8
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.6e-64 250.4 159 75.5
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 1.5e-62 243.8 141 83.0
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.0e-58 231.1 140 80.0
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.0e-58 229.6 191 62.3
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 4.3e-57 225.7 206 59.7
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 2.8e-56 223.0 246 53.3
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 4.8e-56 222.2 237 43.0
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.1e-55 219.5 137 78.1
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 7.2e-52 208.4 130 77.7
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 3.0e-50 203.0 238 45.4
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.1e-49 201.1 171 59.1
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.6e-49 199.9 126 78.6
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.2e-48 196.8 118 76.3
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.0e-46 190.3 110 80.0
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.9e-45 186.4 107 79.4
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 6.5e-45 185.3 110 80.9
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.5e-44 183.3 113 74.3
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 9.4e-44 181.4 136 66.9
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 9.4e-44 181.4 136 66.9
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.2e-42 175.6 237 39.7
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.5e-41 174.1 101 78.2
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 3.1e-39 166.4 164 55.5
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 5.9e-38 162.2 219 41.6
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.9e-36 157.1 97 76.3
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.5e-36 156.8 103 68.9
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.0e-33 147.1 212 40.1
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 2.2e-32 143.7 77 85.7
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.7e-32 142.9 82 74.4
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 8.2e-32 141.7 74 83.8
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 1.2e-30 137.9 76 82.9
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 3.8e-29 132.9 74 78.4
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 7.2e-28 128.6 67 86.6
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 8.3e-24 115.2 242 33.1
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.2e-22 111.3 56 82.1
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 7.7e-22 108.6 57 80.7
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 7.7e-22 108.6 82 63.4
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.3e-21 107.8 61 80.3
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 2.6e-17 93.6 53 77.4
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 5.7e-17 92.4 55 76.4
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 1.7e-16 90.9 51 76.5
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 9.2e-15 85.1 59 59.3
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.5e-14 83.2 114 40.4
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 2.9e-13 80.1 47 72.3
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 2.6e-09 67.0 100 39.0
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 4.4e-09 66.2 45 66.7
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 1.8e-07 60.8 74 47.3


User provided reference genes

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