Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 2.7e-194 681.8 342 100.0
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 1.7e-167 592.8 344 85.8
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 2.2e-167 592.4 347 86.2
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 2.8e-167 592.0 342 86.3
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 6.3e-167 590.9 342 85.7
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 7.0e-166 587.4 342 84.8
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 6.6e-164 580.9 344 84.0
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 7.3e-163 577.4 344 83.1
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 2.6e-160 568.9 324 84.6
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 2.9e-159 565.5 394 74.1
Atru.chr13.2479 Acer truncatum HOM05D006459 ORTHO05D008414 9.2e-158 560.5 343 79.3
MD08G1213000 Malus domestica HOM05D006459 ORTHO05D008414 1.5e-155 553.1 348 77.9
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 7.3e-155 550.8 337 80.4
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 2.1e-154 549.3 337 80.4
CiPaw.03G015900 Carya illinoinensis HOM05D006459 ORTHO05D008414 2.8e-154 548.9 342 76.9
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 4.7e-154 548.1 328 79.3
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 4.7e-154 548.1 343 78.7
GSVIVG01036383001 Vitis vinifera HOM05D006459 ORTHO05D008414 4.7e-154 548.1 344 77.3
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 8.0e-154 547.4 342 76.6
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 8.0e-154 547.4 337 79.8
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 1.1e-153 547.0 348 77.6
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 3.1e-153 545.4 338 79.3
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 4.0e-153 545.0 341 78.3
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 5.2e-153 544.7 344 77.3
Manes.18G118600 Manihot esculenta HOM05D006459 ORTHO05D008414 6.8e-153 544.3 325 80.6
CiPaw.03G015700 Carya illinoinensis HOM05D006459 ORTHO05D008414 1.2e-152 543.5 342 76.0
TAR628G1703 Trochodendron aralioides HOM05D006459 ORTHO05D008414 1.5e-152 543.1 336 78.0
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 2.6e-152 542.3 347 76.1
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 1.7e-151 539.7 320 80.6
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 3.7e-151 538.5 330 77.3
COL.COLO4_24570 Corchorus olitorius HOM05D006459 ORTHO05D008414 8.3e-151 537.3 345 77.1
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 1.1e-150 537.0 311 82.0
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 1.9e-150 536.2 334 77.8
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 1.9e-150 536.2 352 76.1
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 7.0e-150 534.3 332 78.0
Actinidia29387 Actinidia chinensis HOM05D006459 ORTHO05D008414 9.2e-150 533.9 340 75.0
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 1.2e-149 533.5 334 77.2
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 1.2e-149 533.5 334 77.2
Dinv09391 Davidia involucrata HOM05D006459 ORTHO05D008414 1.2e-149 533.5 341 75.4
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 1.2e-149 533.5 336 75.9
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 1.6e-149 533.1 334 77.2
CSS0029003 Camellia sinensis var. sinensis HOM05D006459 ORTHO05D008414 1.6e-149 533.1 339 74.3
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 1.6e-149 533.1 326 78.5
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 2.0e-149 532.7 332 77.4
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 2.7e-149 532.3 325 78.5
PSO170G3138 Papaver somniferum HOM05D006459 ORTHO05D008414 3.5e-149 531.9 339 74.9
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 4.6e-149 531.6 327 77.7
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 1.0e-148 530.4 331 76.1
Lsat_1_v5_gn_4_65220 Lactuca sativa HOM05D006459 ORTHO05D008414 2.3e-148 529.3 340 74.7
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 6.6e-148 527.7 334 76.3
CANSAT54G1068 Cannabis sativa HOM05D006459 ORTHO05D008414 6.6e-148 527.7 342 74.0
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 8.6e-148 527.3 325 77.8
Cpa.g.sc21.78 Carica papaya HOM05D006459 ORTHO05D008414 1.1e-147 526.9 335 78.2
CsaV3_5G040000 Cucumis sativus L. HOM05D006459 ORTHO05D008414 1.9e-147 526.2 339 76.4
CAN.G924.3 Capsicum annuum HOM05D006459 ORTHO05D008414 2.5e-147 525.8 342 74.0
MSTRG.1592 Avicennia marina HOM05D006459 ORTHO05D008414 5.6e-147 524.6 348 73.3
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 5.6e-147 524.6 335 76.4
PSO017G7078 Papaver somniferum HOM05D006459 ORTHO05D008414 3.6e-146 521.9 339 73.7
MBI03_g28420_MAGBIO Magnolia biondii HOM05D006459 ORTHO05D008414 4.7e-146 521.5 330 76.1
ECA234G2100 Erigeron canadensis HOM05D006459 ORTHO05D008414 1.1e-145 520.4 344 73.8
Sopen11g018500 Solanum pennellii HOM05D006459 ORTHO05D008414 1.1e-145 520.4 342 72.8
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 2.3e-145 519.2 327 76.5
Solyc11g042430.2 Solanum lycopersicum HOM05D006459 ORTHO05D008414 2.3e-145 519.2 342 72.5
Migut.C01370 Erythranthe guttata HOM05D006459 ORTHO05D008414 4.0e-145 518.5 345 72.2
Cc10_g08780 Coffea canephora HOM05D006459 ORTHO05D008414 5.2e-145 518.1 316 76.9
HanXRQChr14g0455131 Helianthus annuus HOM05D006459 ORTHO05D008414 8.9e-145 517.3 339 74.3
Aqoxy5G00842 Aquilegia oxysepala HOM05D006459 ORTHO05D008414 1.2e-144 516.9 315 78.1
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 2.0e-144 516.2 338 75.4
ClCG08G001020 Citrullus lanatus HOM05D006459 ORTHO05D008414 1.7e-143 513.1 332 76.2
PGR042G0716 Punica granatum HOM05D006459 ORTHO05D008414 2.9e-143 512.3 338 73.1
Oeu023200.3 Olea europaea HOM05D006459 ORTHO05D008414 3.7e-143 511.9 312 76.9
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 1.4e-142 510.0 367 71.1
MD15G1395500 Malus domestica HOM05D006459 ORTHO05D008414 9.2e-142 507.3 348 75.0
HPP92_005641 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.0e-140 503.8 327 73.7
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 1.7e-140 503.1 321 76.0
SalBow7G1102 Salvia bowleyana HOM05D006459 ORTHO05D008414 8.6e-140 500.7 335 73.1
MELO3C022178.2 Cucumis melo HOM05D006459 ORTHO05D008414 4.3e-139 498.4 337 72.1
Peaxi162Scf00078g00423 Petunia axillaris HOM05D006459 ORTHO05D008414 8.1e-138 494.2 316 75.3
ATR1089G027 Amborella trichopoda HOM05D006459 ORTHO05D008414 1.3e-135 486.9 327 72.8
unitig_8.g4894 Utricularia gibba HOM05D006459 ORTHO05D008414 1.9e-134 483.0 340 70.6
Zm00001eb082080 Zea mays HOM05D006459 ORTHO05D008414 2.1e-133 479.6 343 70.3
Nitab4.5_0000903g0050 Nicotiana tabacum HOM05D006459 ORTHO05D008414 6.2e-130 468.0 342 67.5
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05D006459 ORTHO05D008414 1.8e-129 466.5 332 67.5
Pp3c6_4660 Physcomitrium patens HOM05D006459 ORTHO05D008414 9.0e-129 464.2 332 67.5
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 1.3e-127 460.3 263 83.7
arahy.Tifrunner.gnm1.ann1.K3NID2 Arachis hypogaea HOM05D006459 ORTHO05D008414 3.9e-124 448.7 391 63.7
Mapoly0007s0278 Marchantia polymorpha HOM05D006459 ORTHO05D008414 6.6e-124 448.0 315 67.3
AUR62034346 Chenopodium quinoa HOM05D006459 ORTHO05D008414 4.0e-121 438.7 254 82.3
SMO356G0681 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 2.2e-119 433.0 321 65.7
Nitab4.5_0000999g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 2.9e-119 432.6 342 64.6
Lj9A698G57 Lonicera japonica HOM05D006459 ORTHO05D008414 2.4e-110 402.9 334 61.7
Duzib268G1319 Durio zibethinus HOM05D006459 ORTHO05D008414 2.7e-109 399.4 338 63.0
Nitab4.5_0003013g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 2.5e-107 392.9 342 59.1
DCAR_017359 Daucus carota HOM05D006459 ORTHO05D008414 6.9e-105 384.8 229 78.6
SGA_v2.0_scaffold118G32601 Striga asiatica HOM05D006459 ORTHO05D008414 6.9e-105 384.8 362 58.8
Sc25g0003010 Simmondsia chinensis HOM05D006459 ORTHO05D008414 7.6e-104 381.3 222 82.4
Rhsim02G0145500 Rhododendron simsii HOM05D006459 ORTHO05D008414 1.1e-102 377.5 525 44.0
Nn5g27277 Nelumbo nucifera HOM05D006459 ORTHO05D008414 1.5e-99 367.1 244 74.6
Hma1.2p1_0074F.1_g039070 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 4.2e-86 322.4 194 77.8
SHI16717 Sapria himalayana HOM05D006459 ORTHO05D008414 8.2e-82 308.1 309 55.7
Hma1.2p1_0074F.1_g039080 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 2.4e-73 280.0 167 76.0
vmacro16046 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 9.1e-73 278.1 177 75.1
CBR_g45928 Chara braunii HOM05D006459 ORTHO05D008414 1.0e-71 274.6 222 57.7
Cre12.g521250 Chlamydomonas reinhardtii HOM05D006459 ORTHO05D008414 5.0e-71 272.3 414 38.6
Haze_26337 Corylus avellana HOM05D006459 ORTHO05D008414 9.1e-65 251.5 319 44.8
Glyma.01G230800 Glycine max HOM05D006459 ORTHO05D008414 7.0e-57 225.3 127 86.6
HPP92_005619 Vanilla planifolia HOM05D006459 ORTHO05D008414 2.9e-55 219.9 130 76.9
MCO04G089 Micromonas commoda HOM05D006459 ORTHO05D008414 2.3e-52 210.3 353 38.5
PRCOL_00002994 Prasinoderma coloniale HOM05D006459 ORTHO05D008414 1.1e-49 201.4 344 36.6
SEGI_15073 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 5.9e-48 195.7 126 73.8
HPP92_005618 Vanilla planifolia HOM05D006459 ORTHO05D008414 5.4e-41 172.6 97 82.5
SMO272G0012 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 1.7e-39 167.5 98 75.5
vmacro16045 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 3.2e-33 146.7 84 83.3
CBR_g27970 Chara braunii HOM05D006459 ORTHO05D008414 1.2e-24 118.2 83 66.3
FAN08G1548 Fragaria x ananassa HOM05D006459 ORTHO05D008414 6.0e-24 115.9 65 83.1
SEGI_06082 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 4.9e-18 96.3 76 60.5
Nn179s44626 Nelumbo nucifera HOM05D006459 ORTHO05D008414 5.4e-17 92.8 56 85.7
SEGI_00088 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 1.4e-09 68.2 38 76.3
MELO3C033538.2 Cucumis melo HOM05D006459 ORTHO05D169875 4.6e-08 63.2 167 28.7
Os02g0581500 Oryza sativa ssp. japonica HOM05D003438 ORTHO05D004235 1.5e-06 58.2 279 24.0
SEGI_14439 Sequoiadendron giganteum HOM05D006459 ORTHO05D385787 1.9e-06 57.8 46 54.3
Lsat_1_v5_gn_2_49420 Lactuca sativa HOM05D006459 ORTHO05D008414 7.3e-06 55.8 30 80.0


User provided reference genes

Program Settings