Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 2.0e-113 412.5 226 100.0
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.4e-90 336.7 231 81.4
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.1e-89 332.8 231 81.4
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 8.6e-88 327.4 228 80.3
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 8.6e-88 327.4 231 79.7
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.9e-87 326.2 227 80.6
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.1e-82 310.5 248 72.2
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.6e-81 306.6 251 69.7
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.1e-81 306.2 242 72.3
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 6.0e-81 304.7 257 67.7
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.0e-80 303.9 219 77.6
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.5e-79 300.1 217 74.7
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 9.6e-79 297.4 226 71.7
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 2.1e-78 296.2 224 75.9
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 6.9e-77 291.2 220 71.8
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 6.9e-77 291.2 226 69.5
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 2.6e-76 289.3 225 71.6
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 5.8e-76 288.1 223 69.5
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 9.9e-76 287.3 231 68.4
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 2.9e-75 285.8 217 72.8
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.8e-75 285.4 221 72.9
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 6.4e-75 284.6 219 68.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 8.4e-75 284.3 221 68.3
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.1e-74 283.9 230 65.7
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.4e-74 283.5 225 70.7
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.9e-74 283.1 218 72.5
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 3.2e-74 282.3 232 69.4
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 5.4e-74 281.6 220 62.3
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 7.1e-74 281.2 219 68.5
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 9.3e-74 280.8 224 62.1
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.2e-73 280.4 219 71.2
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.2e-73 280.4 229 69.4
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.6e-73 280.0 224 67.0
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.1e-73 279.6 219 71.2
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.6e-73 278.5 220 61.8
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 6.0e-73 278.1 217 67.7
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.0e-72 277.3 241 60.6
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.0e-72 277.3 223 64.1
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.7e-72 276.6 221 64.3
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.7e-72 276.6 223 68.6
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 2.3e-72 276.2 224 66.5
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.0e-72 275.8 220 70.5
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 3.9e-72 275.4 233 59.7
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.9e-72 275.4 219 68.5
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 3.9e-72 275.4 226 68.1
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 6.6e-72 274.6 224 63.4
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 6.6e-72 274.6 219 68.5
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.1e-71 273.9 214 64.0
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.1e-71 273.9 223 66.8
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.1e-71 273.9 223 66.8
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.1e-71 273.9 228 65.8
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.5e-71 273.5 227 65.6
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.5e-71 273.5 224 62.5
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.5e-71 273.5 223 62.3
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.5e-71 273.5 224 62.5
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.5e-71 273.5 224 60.3
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.5e-71 273.5 222 62.2
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.9e-71 273.1 227 63.4
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.5e-71 272.7 219 66.7
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.5e-71 272.7 219 66.7
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.5e-71 272.7 214 66.8
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.5e-71 272.7 221 67.4
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.3e-71 272.3 227 65.2
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.3e-71 271.9 221 65.6
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 4.3e-71 271.9 224 67.4
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 5.6e-71 271.6 224 60.7
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.3e-70 270.4 223 61.4
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.6e-70 270.0 228 60.5
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.1e-70 269.6 223 61.4
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.1e-70 269.6 217 69.1
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 3.6e-70 268.9 218 67.0
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 8.1e-70 267.7 211 64.9
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 8.1e-70 267.7 225 64.0
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.8e-69 266.5 224 60.3
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.8e-69 266.5 218 62.4
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.4e-69 266.2 207 71.5
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.4e-69 266.2 230 64.8
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 6.9e-69 264.6 226 57.1
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 9.0e-69 264.2 225 66.2
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.2e-68 263.8 218 61.5
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.2e-68 263.8 223 57.8
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.5e-68 261.9 219 67.6
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.5e-68 261.9 220 65.9
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 9.9e-68 260.8 223 60.5
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.3e-67 260.4 230 65.2
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.9e-67 259.2 238 55.9
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 2.9e-67 259.2 171 70.8
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.9e-67 259.2 219 66.2
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 3.8e-67 258.8 221 65.2
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.8e-67 258.8 220 62.3
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.1e-66 257.3 236 61.0
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.4e-66 256.9 216 63.4
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.4e-66 256.9 226 58.0
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.4e-66 256.1 222 63.1
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.1e-66 254.6 215 62.8
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 9.3e-66 254.2 222 59.9
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.6e-65 253.4 217 64.1
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 2.7e-65 252.7 216 62.0
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.3e-64 250.4 214 62.1
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-63 246.9 219 53.0
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.9e-63 246.5 212 62.3
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.5e-63 246.1 227 63.0
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 4.3e-63 245.4 164 68.9
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 7.4e-63 244.6 165 70.9
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 9.6e-63 244.2 201 70.1
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 9.6e-63 244.2 224 62.9
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 2.1e-62 243.0 175 67.4
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 2.1e-62 243.0 266 54.5
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 3.7e-62 242.3 223 62.3
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.1e-61 240.7 222 60.4
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.4e-61 240.4 267 50.2
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.8e-61 240.0 221 59.3
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 2.4e-61 239.6 202 59.4
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.0e-61 238.8 212 56.6
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 4.0e-61 238.8 222 58.1
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.5e-60 236.9 253 52.6
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 1.5e-60 236.9 227 54.6
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-60 236.9 227 54.6
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-60 236.9 227 54.6
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 3.4e-60 235.7 226 58.4
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.8e-60 235.0 227 54.2
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 5.8e-60 235.0 219 53.0
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.3e-59 233.8 219 63.5
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.7e-59 233.4 226 61.1
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 6.5e-59 231.5 140 80.7
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.5e-59 231.5 227 53.7
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 3.5e-57 225.7 142 73.2
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 4.6e-57 225.3 224 53.6
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.3e-56 223.0 230 53.5
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 5.1e-56 221.9 245 49.4
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 8.7e-56 221.1 214 56.5
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 4.3e-55 218.8 247 53.0
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 7.4e-55 218.0 235 52.3
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.3e-54 217.2 137 75.2
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.6e-52 209.5 140 72.9
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.2e-50 201.4 264 47.0
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.6e-49 200.3 133 70.7
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.8e-48 196.8 179 59.8
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.8e-48 196.8 224 50.0
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.3e-48 196.4 130 73.8
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.7e-46 189.1 140 63.6
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.0e-43 181.0 128 68.0
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 1.6e-41 173.7 122 68.0
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.6e-41 173.7 157 54.1
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 6.1e-41 171.8 127 66.9
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 6.7e-40 168.3 138 58.0
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 8.8e-32 141.4 129 62.0
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.2e-30 136.7 88 70.5
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-29 133.3 236 39.4
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 2.0e-28 130.2 94 64.9
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-26 124.0 91 68.1
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 8.2e-22 108.2 112 48.2
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 5.0e-19 99.0 97 69.1
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 4.2e-18 95.9 124 40.3
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 3.6e-17 92.8 221 29.4
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 2.3e-16 90.1 79 55.7
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 3.4e-15 86.3 151 34.4
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 4.4e-15 85.9 102 42.2
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 9.8e-15 84.7 142 33.8
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 2.8e-14 83.2 129 36.4
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.3e-11 74.3 77 50.6
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.2e-10 69.3 92 56.5
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 5.5e-10 68.9 89 53.9
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 7.2e-10 68.6 95 54.7
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 9.4e-10 68.2 84 61.9
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 4.7e-09 65.9 69 46.4
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.2e-06 57.0 56 50.0


User provided reference genes

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