Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00155g0022757 Lotus japonicus HOM05D003577 ORTHO05D004663 9.0e-99 363.6 186 100.0
Lj4g0018948 Lotus japonicus HOM05D003577 ORTHO05D004663 2.2e-57 226.1 189 67.7
Cfa012750 Carpinus fangiana HOM05D003577 ORTHO05D004663 3.3e-53 212.2 175 67.4
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 7.4e-53 211.1 175 65.1
CiPaw.12G108500 Carya illinoinensis HOM05D003577 ORTHO05D004663 1.7e-52 209.9 175 66.9
Haze_07878 Corylus avellana HOM05D003577 ORTHO05D004663 1.7e-52 209.9 175 65.7
Medtr4g101130 Medicago truncatula HOM05D003577 ORTHO05D004663 2.8e-52 209.1 175 66.3
Thecc.03G254200 Theobroma cacao HOM05D003577 ORTHO05D004663 4.8e-52 208.4 175 65.1
Cpa.g.sc29.108 Carica papaya HOM05D003577 ORTHO05D004663 6.3e-52 208.0 175 65.7
Duzib084G0825 Durio zibethinus HOM05D003577 ORTHO05D004663 1.4e-51 206.8 175 63.4
Lalb_Chr05g0225731 Lupinus albus HOM05D003577 ORTHO05D004663 1.4e-51 206.8 187 63.6
TAR263G0002 Trochodendron aralioides HOM05D003577 ORTHO05D004663 1.4e-51 206.8 176 64.8
Cc08_g12710 Coffea canephora HOM05D003577 ORTHO05D004663 1.8e-51 206.5 188 62.8
Duzib205G2002 Durio zibethinus HOM05D003577 ORTHO05D004663 3.1e-51 205.7 190 61.1
TAR375G0076 Trochodendron aralioides HOM05D003577 ORTHO05D004663 3.1e-51 205.7 175 64.6
arahy.Tifrunner.gnm1.ann1.5G087V Arachis hypogaea HOM05D003577 ORTHO05D004663 4.1e-51 205.3 175 64.6
arahy.Tifrunner.gnm1.ann1.BE9V1M Arachis hypogaea HOM05D003577 ORTHO05D004663 4.1e-51 205.3 175 64.6
Psat4g070040 Pisum sativum HOM05D003577 ORTHO05D004663 5.3e-51 204.9 188 61.2
CiPaw.11G152300 Carya illinoinensis HOM05D003577 ORTHO05D004663 7.0e-51 204.5 175 64.6
Glyma.17G140600 Glycine max HOM05D003577 ORTHO05D004663 1.5e-50 203.4 175 62.9
Hma1.2p1_0753F.1_g212980 Hydrangea macrophylla HOM05D003577 ORTHO05D004663 1.5e-50 203.4 175 62.9
Phvul.002G062000 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 2.0e-50 203.0 189 62.4
VMungo1215G0981 Vigna mungo HOM05D003577 ORTHO05D004663 2.0e-50 203.0 189 61.4
Actinidia14440 Actinidia chinensis HOM05D003577 ORTHO05D004663 2.6e-50 202.6 175 63.4
CANSAT21G0247 Cannabis sativa HOM05D003577 ORTHO05D004663 2.6e-50 202.6 175 64.0
GSVIVG01001303001 Vitis vinifera HOM05D003577 ORTHO05D004663 2.6e-50 202.6 175 62.9
Dinv39124 Davidia involucrata HOM05D003577 ORTHO05D004663 4.5e-50 201.8 189 60.8
Psat4g070120 Pisum sativum HOM05D003577 ORTHO05D004663 4.5e-50 201.8 175 62.9
Prupe.1G339800 Prunus persica HOM05D003577 ORTHO05D004663 4.5e-50 201.8 189 59.3
PGR042G0879 Punica granatum HOM05D003577 ORTHO05D004663 4.5e-50 201.8 175 63.4
Actinidia02117 Actinidia chinensis HOM05D003577 ORTHO05D004663 5.9e-50 201.4 175 64.0
MD16G1010900 Malus domestica HOM05D003577 ORTHO05D004663 7.7e-50 201.1 189 60.3
Prupe.5G072700 Prunus persica HOM05D003577 ORTHO05D004663 7.7e-50 201.1 177 62.7
RcHm_v2.0_Chr4g0445541 Rosa chinensis HOM05D003577 ORTHO05D004663 7.7e-50 201.1 175 62.9
Solyc08g078850.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 1.0e-49 200.7 175 61.7
Sopen08g027320 Solanum pennellii HOM05D003577 ORTHO05D004663 1.0e-49 200.7 175 61.7
Cc08_g12720 Coffea canephora HOM05D003577 ORTHO05D004663 1.7e-49 199.9 175 62.9
Glyma.01G210400 Glycine max HOM05D003577 ORTHO05D004663 1.7e-49 199.9 189 61.9
Glyma.05G058100 Glycine max HOM05D003577 ORTHO05D004663 1.7e-49 199.9 189 60.3
Gohir.A08G171900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.7e-49 199.9 188 60.6
Gorai.009G297700 Gossypium raimondii HOM05D003577 ORTHO05D004663 1.7e-49 199.9 188 60.6
AUR62039952 Chenopodium quinoa HOM05D003577 ORTHO05D004663 2.2e-49 199.5 187 59.4
FAN08G3105 Fragaria x ananassa HOM05D003577 ORTHO05D004663 2.2e-49 199.5 175 62.9
Peaxi162Scf00002g01511 Petunia axillaris HOM05D003577 ORTHO05D004663 2.2e-49 199.5 175 62.9
QL12p012756 Quercus lobata HOM05D003577 ORTHO05D004663 2.2e-49 199.5 175 62.3
ClCG01G003970 Citrullus lanatus HOM05D003577 ORTHO05D004663 2.9e-49 199.1 175 62.3
FAN04G1063 Fragaria x ananassa HOM05D003577 ORTHO05D004663 2.9e-49 199.1 193 59.6
Lj2C215G3 Lonicera japonica HOM05D003577 ORTHO05D004663 2.9e-49 199.1 175 62.9
Medtr5g012390 Medicago truncatula HOM05D003577 ORTHO05D004663 3.8e-49 198.7 175 63.4
Potri.001G122400 Populus trichocarpa HOM05D003577 ORTHO05D004663 3.8e-49 198.7 175 62.9
AUR62007499 Chenopodium quinoa HOM05D003577 ORTHO05D004663 5.0e-49 198.4 187 59.4
Ciclev10020910m.g Citrus clementina HOM05D003577 ORTHO05D004663 5.0e-49 198.4 187 58.8
Eucgr.E00444 Eucalyptus grandis HOM05D003577 ORTHO05D004663 5.0e-49 198.4 187 59.9
Manes.01G079100 Manihot esculenta HOM05D003577 ORTHO05D004663 5.0e-49 198.4 175 61.7
Psat6g166680 Pisum sativum HOM05D003577 ORTHO05D004663 5.0e-49 198.4 193 60.1
PGSC0003DMG400004800 Solanum tuberosum HOM05D003577 ORTHO05D004663 5.0e-49 198.4 175 61.7
GSVIVG01027640001 Vitis vinifera HOM05D003577 ORTHO05D004663 5.0e-49 198.4 175 62.3
Gohir.D08G190300 Gossypium hirsutum HOM05D003577 ORTHO05D004663 6.5e-49 198.0 188 60.1
QL12p012789 Quercus lobata HOM05D003577 ORTHO05D004663 6.5e-49 198.0 175 62.3
DCAR_027785 Daucus carota HOM05D003577 ORTHO05D004663 8.5e-49 197.6 188 58.0
Nitab4.5_0006367g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 1.1e-48 197.2 175 60.6
Nitab4.5_0000312g0260 Nicotiana tabacum HOM05D003577 ORTHO05D004663 1.4e-48 196.8 175 61.1
Nitab4.5_0012654g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 1.4e-48 196.8 175 60.0
Nitab4.5_0004059g0040 Nicotiana tabacum HOM05D003577 ORTHO05D004663 1.9e-48 196.4 175 60.6
MELO3C005539.2 Cucumis melo HOM05D003577 ORTHO05D004663 2.5e-48 196.1 188 60.1
FvH4_5g00090 Fragaria vesca HOM05D003577 ORTHO05D004663 2.5e-48 196.1 175 62.3
Sc22g0000780 Simmondsia chinensis HOM05D003577 ORTHO05D004663 2.5e-48 196.1 190 58.9
Atru.chr9.1341 Acer truncatum HOM05D003577 ORTHO05D004663 3.2e-48 195.7 175 61.7
EL10Ac5g13048 Beta vulgaris HOM05D003577 ORTHO05D004663 3.2e-48 195.7 187 57.8
CAN.G1218.7 Capsicum annuum HOM05D003577 ORTHO05D004663 3.2e-48 195.7 175 60.6
Ah.12g056680 Amaranthus hybridus HOM05D003577 ORTHO05D004663 4.2e-48 195.3 187 58.3
CDE12G0646 Ceratophyllum demersum HOM05D003577 ORTHO05D004663 4.2e-48 195.3 173 62.4
Oeu062976.1 Olea europaea HOM05D003577 ORTHO05D004663 4.2e-48 195.3 175 60.6
FAN18G1797 Fragaria x ananassa HOM05D003577 ORTHO05D004663 5.5e-48 194.9 175 61.7
QL12p012793 Quercus lobata HOM05D003577 ORTHO05D004663 5.5e-48 194.9 187 59.9
CsaV3_5G004150 Cucumis sativus L. HOM05D003577 ORTHO05D004663 7.2e-48 194.5 189 59.3
DCAR_006822 Daucus carota HOM05D003577 ORTHO05D004663 7.2e-48 194.5 189 58.2
VMungo0251G3133 Vigna mungo HOM05D003577 ORTHO05D004663 7.2e-48 194.5 175 61.1
Gohir.D03G162000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 9.4e-48 194.1 175 60.0
Gorai.003G170500 Gossypium raimondii HOM05D003577 ORTHO05D004663 9.4e-48 194.1 175 60.0
Gohir.A12G219850 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.2e-47 193.7 175 60.0
Gohir.D12G222000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.2e-47 193.7 175 60.0
Gorai.008G238000 Gossypium raimondii HOM05D003577 ORTHO05D004663 1.2e-47 193.7 175 60.0
CSS0037300 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 2.1e-47 193.0 175 60.6
CSS0040266 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 2.1e-47 193.0 175 59.4
Ah.02g116790 Amaranthus hybridus HOM05D003577 ORTHO05D004663 3.6e-47 192.2 187 57.2
ECA233G5538 Erigeron canadensis HOM05D003577 ORTHO05D004663 3.6e-47 192.2 175 60.6
Hund11614 Selenicereus undatus HOM05D003577 ORTHO05D004663 3.6e-47 192.2 186 60.2
THA.LOC104798465 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 3.6e-47 192.2 157 63.1
Ca_24570_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 4.7e-47 191.8 175 61.7
Nn6g34004 Nelumbo nucifera HOM05D003577 ORTHO05D004663 4.7e-47 191.8 175 59.4
Thhalv10025596m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 6.1e-47 191.4 175 60.6
Potri.008G135920 Populus trichocarpa HOM05D003577 ORTHO05D004663 6.1e-47 191.4 175 60.0
RcHm_v2.0_Chr4g0406091 Rosa chinensis HOM05D003577 ORTHO05D004663 6.1e-47 191.4 175 59.4
MBI04_g03669_MAGBIO Magnolia biondii HOM05D003577 ORTHO05D004663 1.0e-46 190.7 187 56.7
Manes.02G038200 Manihot esculenta HOM05D003577 ORTHO05D004663 1.0e-46 190.7 175 59.4
AL7G37440 Arabidopsis lyrata HOM05D003577 ORTHO05D004663 1.4e-46 190.3 177 58.8
PGR031G3899 Punica granatum HOM05D003577 ORTHO05D004663 1.4e-46 190.3 175 59.4
TWI15G1033 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 1.4e-46 190.3 175 60.0
Carub.0007s2413 Capsella rubella HOM05D003577 ORTHO05D004663 1.8e-46 189.9 177 59.3
Sabra01G0094200 Salix brachista HOM05D003577 ORTHO05D004663 1.8e-46 189.9 175 61.1
Sabra03G0077100 Salix brachista HOM05D003577 ORTHO05D004663 1.8e-46 189.9 175 60.0
TWI15G0060 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 1.8e-46 189.9 175 59.4
Nn6g34005 Nelumbo nucifera HOM05D003577 ORTHO05D004663 2.3e-46 189.5 173 60.7
RcHm_v2.0_Chr7g0202841 Rosa chinensis HOM05D003577 ORTHO05D004663 3.0e-46 189.1 175 61.1
Sp7g16910 Schrenkiella parvula HOM05D003577 ORTHO05D004663 3.0e-46 189.1 175 59.4
BcaNung00105 Brassica carinata HOM05D003577 ORTHO05D004663 3.9e-46 188.7 188 58.0
Thhalv10025435m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 3.9e-46 188.7 175 60.6
Peaxi162Scf00102g01136 Petunia axillaris HOM05D003577 ORTHO05D004663 3.9e-46 188.7 175 58.9
AT4G17260 Arabidopsis thaliana HOM05D003577 ORTHO05D004663 5.2e-46 188.3 177 58.8
CARHR223890 Cardamine hirsuta HOM05D003577 ORTHO05D004663 5.2e-46 188.3 177 59.3
BraA03t14127Z Brassica rapa HOM05D003577 ORTHO05D004663 6.7e-46 188.0 175 58.3
BcaNung03469 Brassica carinata HOM05D003577 ORTHO05D004663 1.1e-45 187.2 175 58.3
Atru.chr9.1342 Acer truncatum HOM05D003577 ORTHO05D004663 1.5e-45 186.8 175 59.4
BcaC06g33546 Brassica carinata HOM05D003577 ORTHO05D004663 1.5e-45 186.8 175 57.7
C07p48690 Brassica napus HOM05D003577 ORTHO05D004663 1.5e-45 186.8 175 57.7
BolC7t45376H Brassica oleracea HOM05D003577 ORTHO05D004663 1.5e-45 186.8 175 57.7
Phvul.003G219400 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 2.0e-45 186.4 175 60.6
BcaC09g50459 Brassica carinata HOM05D003577 ORTHO05D004663 3.3e-45 185.7 188 56.4
A01p20100 Brassica napus HOM05D003577 ORTHO05D004663 3.3e-45 185.7 188 56.9
C01p25250 Brassica napus HOM05D003577 ORTHO05D004663 3.3e-45 185.7 188 56.4
BolC1t02475H Brassica oleracea HOM05D003577 ORTHO05D004663 3.3e-45 185.7 188 56.4
BraA01t01934Z Brassica rapa HOM05D003577 ORTHO05D004663 3.3e-45 185.7 188 56.9
Sed0005868 Sechium edule HOM05D003577 ORTHO05D004663 4.4e-45 185.3 178 60.1
PGSC0003DMG400012478 Solanum tuberosum HOM05D003577 ORTHO05D004663 4.4e-45 185.3 179 57.5
Lsat_1_v5_gn_3_740 Lactuca sativa HOM05D003577 ORTHO05D004663 7.4e-45 184.5 175 59.4
Aa31LG6G2900 Aethionema arabicum HOM05D003577 ORTHO05D004663 9.7e-45 184.1 173 59.5
Lsat_1_v5_gn_6_3021 Lactuca sativa HOM05D003577 ORTHO05D004663 1.3e-44 183.7 175 58.3
THA.LOC104813333 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 1.3e-44 183.7 175 57.7
Solyc08g007420.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 1.7e-44 183.3 184 57.1
Sopen08g003370 Solanum pennellii HOM05D003577 ORTHO05D004663 1.7e-44 183.3 184 57.1
HanXRQChr17g0549811 Helianthus annuus HOM05D003577 ORTHO05D004663 6.3e-44 181.4 175 57.7
Migut.A00960 Erythranthe guttata HOM05D003577 ORTHO05D004663 1.4e-43 180.3 189 53.4
SalBow6G4668 Salvia bowleyana HOM05D003577 ORTHO05D004663 1.8e-43 179.9 175 54.9
CANSAT21G2077 Cannabis sativa HOM05D003577 ORTHO05D004663 3.1e-43 179.1 175 56.6
SGA_v2.0_scaffold146G36158 Striga asiatica HOM05D003577 ORTHO05D004663 5.3e-43 178.3 175 56.0
HanXRQChr13g0396351 Helianthus annuus HOM05D003577 ORTHO05D004663 7.0e-43 177.9 175 56.6
HanXRQChr06g0164341 Helianthus annuus HOM05D003577 ORTHO05D004663 9.1e-43 177.6 175 57.1
MSTRG.12085 Avicennia marina HOM05D003577 ORTHO05D004663 1.2e-42 177.2 175 55.4
Eucgr.D02046 Eucalyptus grandis HOM05D003577 ORTHO05D004663 1.2e-42 177.2 176 55.1
Lj2g0000249 Lotus japonicus HOM05D003577 ORTHO05D004663 1.2e-42 177.2 171 57.9
PSO782G2886 Papaver somniferum HOM05D003577 ORTHO05D004663 1.6e-42 176.8 187 55.6
vmacro14092 Vaccinium macrocarpon HOM05D003577 ORTHO05D004663 1.6e-42 176.8 175 56.0
Aqoxy5G03916 Aquilegia oxysepala HOM05D003577 ORTHO05D004663 2.6e-42 176.0 175 56.6
SalBow6G1855 Salvia bowleyana HOM05D003577 ORTHO05D004663 6.5e-41 171.4 175 54.3
unitig_0.g1061 Utricularia gibba HOM05D003577 ORTHO05D004663 3.2e-40 169.1 175 52.0
SEGI_01079 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 4.0e-38 162.2 185 48.1
SEGI_40617 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 6.7e-38 161.4 189 50.8
SEGI_41296 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 8.8e-38 161.0 189 50.8
SEGI_18702 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 1.2e-37 160.6 202 46.5
unitig_0.g1064 Utricularia gibba HOM05D003577 ORTHO05D004663 1.2e-37 160.6 175 48.0
Zm00001eb229440 Zea mays HOM05D003577 ORTHO05D004663 1.2e-37 160.6 176 53.4
Os02g0105400 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 2.6e-37 159.5 174 52.3
Zm00001eb229430 Zea mays HOM05D003577 ORTHO05D004663 7.5e-37 157.9 177 52.0
ATR0681G358 Amborella trichopoda HOM05D003577 ORTHO05D004663 3.7e-36 155.6 166 50.6
CSS0016480 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 3.7e-36 155.6 175 52.6
TPR.G25882 Trifolium pratense HOM05D003577 ORTHO05D004663 3.7e-36 155.6 147 59.2
Pp3c21_11360 Physcomitrium patens HOM05D003577 ORTHO05D004663 9.1e-35 151.0 168 50.0
Os06g0104900 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 2.0e-34 149.8 157 55.4
Pp3c22_12920 Physcomitrium patens HOM05D003577 ORTHO05D004663 2.0e-34 149.8 168 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3813 Anthoceros agrestis HOM05D003577 ORTHO05D004663 7.7e-34 147.9 178 47.2
Pp3c18_10120 Physcomitrium patens HOM05D003577 ORTHO05D004663 5.0e-33 145.2 168 47.0
CBR_g24220 Chara braunii HOM05D003577 ORTHO05D004663 1.5e-32 143.7 197 44.7
Gohir.A03G008900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 9.4e-32 141.0 140 56.4
Mapoly0049s0082 Marchantia polymorpha HOM05D003577 ORTHO05D004663 8.0e-31 137.9 160 47.5
CAN.G1227.9 Capsicum annuum HOM05D003577 ORTHO05D004663 3.0e-30 136.0 175 47.4
SMO116G0389 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 4.5e-26 122.1 153 43.1
SEGI_37574 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 6.6e-25 118.2 189 41.8
SMO356G0074 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 1.8e-22 110.2 142 45.1
Prupe.6G054700 Prunus persica HOM05D003577 ORTHO05D044351 8.9e-22 107.8 76 73.7
SalBow1G7535 Salvia bowleyana HOM05D003577 ORTHO05D351489 5.7e-21 105.1 148 49.3
Potri.003G111201 Populus trichocarpa HOM05D003577 ORTHO05D004663 4.1e-19 99.0 111 53.2
VMungo0720G2534 Vigna mungo HOM05D003577 ORTHO05D435637 5.6e-16 88.6 67 70.1
Ca_24953_v3 Cicer arietinum L. HOM05D003577 ORTHO05D044351 8.9e-14 81.3 56 67.9
AL5G17860 Arabidopsis lyrata HOM05D003577 ORTHO05D004663 1.6e-10 70.5 50 70.0
Ca_13887_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 1.6e-10 70.5 47 72.3
Ca_20701_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 1.6e-10 70.5 47 72.3
CAN.G1227.7 Capsicum annuum HOM05D003577 ORTHO05D004663 2.0e-10 70.1 48 68.8


User provided reference genes

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