Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 1.0e-52 209.9 113 100.0
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 2.0e-24 115.9 111 58.6
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 6.4e-23 110.9 117 56.4
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.8e-22 109.4 107 57.9
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 2.4e-22 109.0 110 56.4
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 2.4e-22 109.0 107 60.7
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 5.4e-22 107.8 117 56.4
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 7.0e-22 107.5 107 61.7
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 7.0e-22 107.5 88 68.2
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.6e-21 106.3 86 67.4
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 7.8e-21 104.0 82 68.3
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 1.3e-20 103.2 86 66.3
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 6.6e-20 100.9 110 57.3
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 6.6e-20 100.9 84 69.0
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 8.6e-20 100.5 90 63.3
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 8.6e-20 100.5 86 66.3
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 1.1e-19 100.1 79 68.4
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 2.5e-19 99.0 111 54.1
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 2.5e-19 99.0 84 66.7
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 3.3e-19 98.6 117 53.8
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 4.3e-19 98.2 90 61.1
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 4.3e-19 98.2 100 63.0
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 7.3e-19 97.4 84 65.5
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.6e-18 96.3 91 64.8
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 3.6e-18 95.1 104 56.7
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.7e-18 94.7 92 58.7
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 4.7e-18 94.7 86 62.8
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 6.2e-18 94.4 88 64.8
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.2e-18 94.4 110 52.7
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 8.0e-18 94.0 100 59.0
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.1e-17 93.6 99 53.5
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 1.8e-17 92.8 84 63.1
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 2.3e-17 92.4 84 61.9
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.3e-17 92.4 87 63.2
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.3e-17 92.4 100 59.0
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.3e-17 92.4 100 59.0
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 3.1e-17 92.0 86 59.3
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.0e-17 91.7 83 63.9
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 6.8e-17 90.9 80 62.5
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 8.9e-17 90.5 80 60.0
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 8.9e-17 90.5 80 60.0
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 8.9e-17 90.5 91 56.0
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.2e-16 90.1 84 60.7
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.5e-16 89.7 90 61.1
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-16 89.7 84 60.7
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 2.0e-16 89.4 78 66.7
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 3.4e-16 88.6 84 59.5
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 3.4e-16 88.6 98 55.1
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 5.8e-16 87.8 83 57.8
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 7.5e-16 87.4 84 60.7
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 7.5e-16 87.4 83 60.2
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 7.5e-16 87.4 85 58.8
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 9.8e-16 87.0 77 63.6
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 9.8e-16 87.0 80 65.0
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 9.8e-16 87.0 83 60.2
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 1.3e-15 86.7 81 56.8
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.3e-15 86.7 80 61.2
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.7e-15 86.3 75 65.3
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 1.7e-15 86.3 79 62.0
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.7e-15 86.3 81 61.7
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 2.2e-15 85.9 79 62.0
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 2.2e-15 85.9 117 50.4
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 3.7e-15 85.1 85 56.5
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 4.9e-15 84.7 81 60.5
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.1e-14 83.6 81 59.3
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.1e-14 83.6 76 61.8
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.4e-14 83.2 87 56.3
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.9e-14 82.8 87 59.8
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.9e-14 82.8 77 61.0
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.9e-14 82.8 76 61.8
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 2.4e-14 82.4 83 56.6
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 2.4e-14 82.4 83 56.6
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 3.2e-14 82.0 76 63.2
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 3.2e-14 82.0 100 56.0
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 3.2e-14 82.0 96 54.2
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.1e-14 81.6 96 54.2
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 7.0e-14 80.9 81 58.0
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 9.2e-14 80.5 84 58.3
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 9.2e-14 80.5 88 51.1
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.2e-13 80.1 80 56.2
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.6e-13 79.7 111 47.7
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 1.6e-13 79.7 93 49.5
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.0e-13 79.3 96 53.1
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 2.7e-13 79.0 79 59.5
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.5e-13 78.6 80 57.5
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.5e-13 78.6 98 52.0
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.6e-13 78.2 79 59.5
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 4.6e-13 78.2 88 53.4
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.8e-13 77.4 84 54.8
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.0e-12 77.0 84 54.8
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.3e-12 76.6 82 52.4
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.3e-12 76.6 79 55.7
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.3e-12 76.6 80 57.5
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 1.3e-12 76.6 96 52.1
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 2.3e-12 75.9 97 50.5
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.3e-12 75.9 87 56.3
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.3e-12 75.9 87 56.3
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.0e-12 75.5 81 58.0
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.0e-12 75.5 80 56.2
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 3.0e-12 75.5 84 54.8
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 3.0e-12 75.5 93 52.7
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 3.9e-12 75.1 84 54.8
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 3.9e-12 75.1 84 54.8
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 3.9e-12 75.1 82 52.4
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 5.0e-12 74.7 79 54.4
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 5.0e-12 74.7 85 54.1
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 6.6e-12 74.3 80 55.0
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 6.6e-12 74.3 80 55.0
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 8.6e-12 73.9 87 55.2
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 1.1e-11 73.6 79 58.2
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 1.5e-11 73.2 84 54.8
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.9e-11 72.8 81 56.8
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 3.3e-11 72.0 55 69.1
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.3e-11 72.0 70 54.3
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.3e-11 72.0 84 53.6
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 4.3e-11 71.6 81 54.3
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.6e-11 71.2 84 51.2
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 9.5e-11 70.5 79 55.7
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 9.5e-11 70.5 80 53.8
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 9.5e-11 70.5 96 51.0
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.2e-10 70.1 59 62.7
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 1.6e-10 69.7 63 61.9
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.1e-10 69.3 77 53.2
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 3.6e-10 68.6 63 58.7
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 1.1e-09 67.0 81 48.1
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 1.4e-09 66.6 81 50.6
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 1.8e-09 66.2 82 50.0
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 3.1e-09 65.5 63 57.1
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 3.1e-09 65.5 81 50.6
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 4.0e-09 65.1 62 54.8
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 2.0e-08 62.8 78 51.3
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 7.5e-08 60.8 85 50.6
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 9.9e-08 60.5 78 47.4
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 9.9e-08 60.5 78 48.7
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.7e-07 59.7 78 47.4
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.7e-07 59.7 72 51.4
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.7e-07 59.7 80 48.8
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.2e-07 59.3 74 50.0
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-07 59.3 79 48.1
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 2.2e-07 59.3 79 48.1
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 2.2e-07 59.3 80 46.2
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 2.9e-07 58.9 80 46.2
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 2.9e-07 58.9 80 46.2
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 2.9e-07 58.9 80 46.2
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 2.9e-07 58.9 80 46.2
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.9e-07 58.9 78 47.4
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 2.9e-07 58.9 88 42.0
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 3.7e-07 58.5 78 47.4
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.7e-07 58.5 78 47.4
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 3.7e-07 58.5 78 43.6
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 4.9e-07 58.2 79 46.8
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 4.9e-07 58.2 55 60.0
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 6.4e-07 57.8 79 43.0
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 8.3e-07 57.4 74 47.3
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.1e-06 57.0 86 40.7
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.1e-06 57.0 78 46.2
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 1.1e-06 57.0 84 44.0
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.1e-06 57.0 99 42.4
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 1.4e-06 56.6 79 45.6
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 1.9e-06 56.2 78 44.9
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 2.4e-06 55.8 75 46.7
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 3.2e-06 55.5 89 46.1
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 4.1e-06 55.1 70 48.6
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 4.1e-06 55.1 77 45.5
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 5.4e-06 54.7 74 47.3
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 5.4e-06 54.7 74 47.3
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 5.4e-06 54.7 85 47.1
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 7.1e-06 54.3 49 57.1
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 7.1e-06 54.3 74 47.3
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 7.1e-06 54.3 74 47.3
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 7.1e-06 54.3 74 47.3
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 7.1e-06 54.3 79 40.5
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 9.2e-06 53.9 79 40.5


User provided reference genes

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