Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00155g0017503 Lotus japonicus HOM05D010371 ORTHO05D003507 9.3e-66 253.4 132 100.0
Ca_05588_v3 Cicer arietinum L. HOM05D010371 ORTHO05D003507 2.3e-48 195.7 123 80.5
Medtr5g069980 Medicago truncatula HOM05D010371 ORTHO05D003507 4.9e-43 177.9 122 77.9
TPR.G24023 Trifolium pratense HOM05D010371 ORTHO05D003507 4.9e-43 177.9 120 80.0
Psat2g059280 Pisum sativum HOM05D010371 ORTHO05D003507 1.1e-42 176.8 121 79.3
Phvul.008G262500 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 7.9e-41 170.6 123 74.0
VMungo0647G2148 Vigna mungo HOM05D010371 ORTHO05D003507 6.7e-40 167.5 123 73.2
Lalb_Chr10g0103281 Lupinus albus HOM05D010371 ORTHO05D003507 3.3e-39 165.2 129 69.8
Glyma.02G225600 Glycine max HOM05D010371 ORTHO05D003507 2.2e-38 162.5 123 71.5
Glyma.14G192400 Glycine max HOM05D010371 ORTHO05D003507 2.8e-38 162.2 123 70.7
arahy.Tifrunner.gnm1.ann1.0452KN Arachis hypogaea HOM05D010371 ORTHO05D003507 5.0e-35 151.4 116 69.8
Lalb_Chr04g0252311 Lupinus albus HOM05D010371 ORTHO05D003507 3.2e-34 148.7 125 68.0
arahy.Tifrunner.gnm1.ann1.N7G3Q4 Arachis hypogaea HOM05D010371 ORTHO05D003507 1.2e-33 146.7 116 68.1
Lj6g0011323 Lotus japonicus HOM05D010371 ORTHO05D003507 2.4e-29 132.5 122 55.7
Glyma.18G065800 Glycine max HOM05D010371 ORTHO05D003507 3.8e-27 125.2 121 56.2
Phvul.006G065200 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 1.6e-25 119.8 121 54.5
VMungo0540G0421 Vigna mungo HOM05D010371 ORTHO05D003507 3.0e-24 115.5 113 54.9
Glyma.11G176100 Glycine max HOM05D010371 ORTHO05D003507 1.5e-23 113.2 121 52.9
TPR.G13269 Trifolium pratense HOM05D010371 ORTHO05D003507 6.3e-22 107.8 112 50.0
Medtr3g462980 Medicago truncatula HOM05D010371 ORTHO05D003507 6.9e-21 104.4 121 50.4
Medtr3g462960 Medicago truncatula HOM05D010371 ORTHO05D003507 1.1e-18 97.1 102 51.0
Ca_14912_v3 Cicer arietinum L. HOM05D010371 ORTHO05D003507 1.4e-18 96.7 114 50.0
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 7.7e-12 74.3 113 46.9
CiPaw.14G060900 Carya illinoinensis HOM05D004233 ORTHO05D003507 1.3e-11 73.6 105 49.5
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 6.5e-11 71.2 115 40.0
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 1.5e-10 70.1 114 42.1
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 1.5e-10 70.1 113 39.8
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 2.5e-10 69.3 94 44.7
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 2.5e-10 69.3 97 44.3
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 7.2e-10 67.8 118 39.0
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 1.6e-09 66.6 85 47.1
Phvul.008G106800 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 1.6e-09 66.6 97 44.3
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 1.6e-09 66.6 104 45.2
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 1.6e-09 66.6 83 49.4
VMungo1383G3137 Vigna mungo HOM05D004233 ORTHO05D003507 1.6e-09 66.6 88 45.5
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 2.1e-09 66.2 112 40.2
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 2.7e-09 65.9 126 38.1
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 4.7e-09 65.1 113 39.8
Phvul.010G005000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 4.7e-09 65.1 85 42.4
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 6.1e-09 64.7 97 45.4
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 8.0e-09 64.3 113 38.9
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 1.0e-08 63.9 112 43.8
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.0e-08 63.9 77 53.2
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.0e-08 63.9 77 53.2
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.0e-08 63.9 115 36.5
Glyma.01G113100 Glycine max HOM05D004233 ORTHO05D003507 1.4e-08 63.5 116 37.1
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 1.4e-08 63.5 115 42.6
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 2.3e-08 62.8 113 38.9
Glyma.07G146500 Glycine max HOM05D004233 ORTHO05D003507 3.0e-08 62.4 113 38.9
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.0e-08 62.4 85 47.1
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.0e-08 62.4 85 47.1
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.0e-08 62.0 77 50.6
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.0e-08 62.0 101 44.6
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 4.0e-08 62.0 118 39.8
Glyma.18G197700 Glycine max HOM05D004233 ORTHO05D003507 5.2e-08 61.6 88 44.3
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 5.2e-08 61.6 113 39.8
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 5.2e-08 61.6 111 39.6
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 6.7e-08 61.2 86 47.7
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.2e-07 60.5 110 44.5
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.5e-07 60.1 110 44.5
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.5e-07 60.1 110 44.5
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 2.0e-07 59.7 98 36.7
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 2.0e-07 59.7 101 42.6
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 2.6e-07 59.3 83 45.8
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 3.3e-07 58.9 114 40.4
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.3e-07 58.9 97 45.4
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.4e-07 58.5 103 42.7
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 5.7e-07 58.2 111 36.9
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 5.7e-07 58.2 114 38.6
DCAR_007388 Daucus carota HOM05D004233 ORTHO05D003507 5.7e-07 58.2 93 39.8
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 5.7e-07 58.2 114 38.6
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 7.5e-07 57.8 117 33.3
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 9.7e-07 57.4 108 37.0
Prupe.6G060400 Prunus persica HOM05D012510 ORTHO05D015115 9.7e-07 57.4 115 38.3
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 1.3e-06 57.0 107 33.6
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.2e-06 56.2 97 45.4
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 2.8e-06 55.8 91 39.6
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 2.8e-06 55.8 97 39.2
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 2.8e-06 55.8 113 38.9
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 3.7e-06 55.5 92 38.0
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 3.7e-06 55.5 92 38.0
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 3.7e-06 55.5 92 38.0
TPR.G29052 Trifolium pratense HOM05D004233 ORTHO05D003507 4.8e-06 55.1 106 40.6
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 6.3e-06 54.7 113 38.1
Eucgr.K02995 Eucalyptus grandis HOM05D004233 ORTHO05D003507 6.3e-06 54.7 119 32.8
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 8.2e-06 54.3 80 40.0
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 8.2e-06 54.3 102 41.2
Phvul.006G186000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 8.2e-06 54.3 91 46.2
Psat3g130680 Pisum sativum HOM05D004233 ORTHO05D003507 8.2e-06 54.3 90 38.9


User provided reference genes

Program Settings