Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 1.2e-119 433.3 233 100.0
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 4.4e-79 298.5 231 71.4
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 6.6e-75 284.6 223 69.5
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 2.1e-73 279.6 228 65.4
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 1.7e-70 270.0 231 65.4
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 3.8e-70 268.9 220 67.7
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 7.3e-66 254.6 222 61.7
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 1.1e-64 250.8 222 61.3
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 1.8e-64 250.0 233 61.4
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 6.4e-62 241.5 187 70.1
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 9.6e-50 201.1 215 49.3
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 3.1e-48 196.1 222 49.1
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.6e-47 193.0 223 48.9
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 3.8e-46 189.1 222 48.2
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 1.6e-44 183.7 241 48.5
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 5.1e-43 178.7 225 47.6
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 2.8e-41 172.9 220 47.7
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 4.5e-39 165.6 217 42.4
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 2.2e-38 163.3 222 41.4
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 8.5e-38 161.4 141 64.5
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 1.4e-37 160.6 228 42.1
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 4.2e-37 159.1 223 44.4
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 5.5e-37 158.7 263 38.4
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 2.1e-36 156.8 220 39.5
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 2.7e-36 156.4 219 43.4
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 1.0e-35 154.5 225 44.4
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 1.8e-35 153.7 200 42.5
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 8.7e-35 151.4 222 41.4
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 1.4e-32 144.1 220 40.9
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 9.1e-32 141.4 220 40.5
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 2.6e-31 139.8 223 40.8
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 3.4e-31 139.4 223 40.4
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 2.2e-30 136.7 225 41.8
TPR.G39060 Trifolium pratense HOM05D007214 ORTHO05D008907 5.0e-30 135.6 144 54.9
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 1.2e-28 131.0 121 53.7
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 7.9e-28 128.3 228 36.4
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 2.3e-27 126.7 221 36.7
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 1.1e-26 124.4 218 35.3
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 1.3e-25 120.9 232 38.8
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 2.2e-25 120.2 218 37.6
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 2.8e-25 119.8 217 33.6
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 4.8e-25 119.0 221 36.2
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 8.2e-25 118.2 215 34.0
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 2.4e-24 116.7 219 32.9
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 2.4e-24 116.7 220 34.5
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 4.1e-24 115.9 226 35.4
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 5.3e-24 115.5 220 34.5
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 1.5e-23 114.0 220 38.2
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 1.5e-23 114.0 225 34.7
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 3.4e-23 112.8 151 41.7
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 3.4e-23 112.8 219 34.7
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 2.2e-22 110.2 224 33.5
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 2.9e-22 109.8 229 32.3
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 6.5e-22 108.6 117 53.0
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 8.5e-22 108.2 222 31.5
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 1.1e-21 107.8 223 31.8
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 2.5e-21 106.7 226 32.7
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 4.2e-21 105.9 214 32.2
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 5.5e-21 105.5 261 32.2
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 7.2e-21 105.1 217 35.0
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 9.4e-21 104.8 217 35.9
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 9.4e-21 104.8 236 32.6
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 2.1e-20 103.6 132 46.2
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 4.7e-20 102.4 224 35.7
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 4.7e-20 102.4 218 34.4
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 1.8e-19 100.5 233 33.9
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 3.9e-19 99.4 97 51.5
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 2.6e-18 96.7 194 32.0
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 9.7e-18 94.7 196 33.7
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 1.7e-17 94.0 222 32.0
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 2.8e-17 93.2 203 30.0
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 2.8e-17 93.2 218 33.5
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 3.7e-17 92.8 220 29.5
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 4.8e-17 92.4 183 36.1
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 3.1e-16 89.7 115 42.6
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 3.1e-16 89.7 223 30.9
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 9.1e-16 88.2 216 28.7
CsaV3_3G041890 Cucumis sativus L. HOM05D062301 ORTHO05D008907 2.6e-15 86.7 214 28.0
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 2.6e-15 86.7 183 34.4
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 2.6e-15 86.7 86 48.8
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 3.5e-15 86.3 99 50.5
Psat3g176600 Pisum sativum HOM05D007214 ORTHO05D008907 1.0e-14 84.7 62 74.2
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 1.7e-14 84.0 168 32.7
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 6.5e-14 82.0 92 42.4
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 6.5e-14 82.0 214 31.3
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 1.1e-13 81.3 228 28.5
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 1.5e-13 80.9 205 31.2
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 2.5e-13 80.1 225 28.0
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 2.5e-13 80.1 121 40.5
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 4.2e-13 79.3 216 26.9
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 1.2e-12 77.8 221 29.9
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 8.0e-12 75.1 214 30.4
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 1.0e-11 74.7 122 38.5
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 2.0e-10 70.5 221 26.7
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 3.3e-10 69.7 101 38.6
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 7.5e-10 68.6 99 43.4
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 9.7e-10 68.2 199 29.6
Sabra17G0063300 Salix brachista HOM05D007214 ORTHO05D008907 9.7e-10 68.2 68 52.9
FAN05G0748 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.4e-08 64.3 109 37.6
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 4.5e-07 59.3 208 24.5
unitig_746.g26578 Utricularia gibba HOM05D007214 ORTHO05D008907 7.7e-07 58.5 47 66.0
BraA06t26977Z Brassica rapa HOM05D007214 ORTHO05D008907 1.3e-06 57.8 224 24.6
MD17G1043300 Malus domestica HOM05D007214 ORTHO05D008907 1.3e-06 57.8 53 47.2
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 5.0e-06 55.8 84 38.1


User provided reference genes

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