Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 6.1e-216 753.8 368 100.0
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 1.6e-152 543.1 374 72.7
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 2.9e-149 532.3 376 72.1
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 7.1e-148 527.7 373 71.0
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.6e-147 526.6 375 70.9
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 7.8e-147 524.2 369 70.2
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.3e-146 523.5 353 72.2
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 1.2e-142 510.4 374 69.5
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 7.1e-140 501.1 378 66.4
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 3.7e-136 488.8 383 64.8
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.8e-122 443.4 360 61.7
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 5.1e-122 441.8 376 59.8
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 4.3e-121 438.7 363 60.9
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 3.7e-120 435.6 354 61.6
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.7e-117 426.8 335 62.4
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 8.5e-117 424.5 285 74.0
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 6.1e-115 418.3 371 57.4
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 3.0e-114 416.0 369 58.8
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.1e-113 414.1 343 61.2
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.3e-113 412.5 370 56.8
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 4.3e-113 412.1 373 58.7
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.7e-112 410.2 356 58.7
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.2e-112 409.8 373 58.4
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.8e-112 409.5 379 56.2
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 3.7e-112 409.1 371 57.4
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 3.7e-112 409.1 373 57.1
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 3.7e-112 409.1 371 57.4
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 9.1e-111 404.4 339 59.0
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 3.4e-110 402.5 371 57.4
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 5.9e-110 401.7 365 57.0
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 7.7e-110 401.4 371 57.4
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.3e-109 400.6 377 55.7
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 5.0e-109 398.7 365 56.7
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 5.0e-109 398.7 346 56.4
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 6.5e-109 398.3 346 59.5
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.5e-108 396.4 375 56.0
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 3.2e-108 396.0 316 62.3
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.2e-108 395.6 355 58.0
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 5.5e-108 395.2 433 52.4
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 7.2e-108 394.8 368 56.5
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.2e-107 394.0 363 55.6
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 1.2e-107 394.0 371 56.3
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 6.1e-107 391.7 340 59.4
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 6.1e-107 391.7 372 55.9
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 7.9e-107 391.3 368 56.0
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.4e-106 390.6 340 59.4
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.4e-106 390.6 366 55.5
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.8e-106 390.2 369 54.7
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.0e-106 389.4 340 59.1
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 5.1e-106 388.7 323 59.8
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 8.8e-106 387.9 371 55.0
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 9.7e-105 384.4 360 56.1
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 1.3e-104 384.0 344 56.7
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.7e-104 383.6 339 57.8
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.7e-104 383.6 364 55.5
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.8e-104 382.1 374 53.7
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 6.3e-104 381.7 328 58.2
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 4.1e-103 379.0 376 54.8
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 7.0e-103 378.3 375 54.4
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.2e-102 377.5 384 53.1
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.2e-102 377.5 366 55.5
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 2.0e-102 376.7 367 54.5
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.7e-101 373.6 352 57.1
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.7e-101 373.6 319 57.4
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 2.9e-101 372.9 369 52.6
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 5.0e-101 372.1 386 52.8
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.9e-100 370.2 349 57.0
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 2.5e-100 369.8 364 53.8
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 2.5e-100 369.8 323 58.5
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.7e-99 366.3 377 53.3
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 1.0e-98 364.4 314 58.6
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.3e-98 363.2 383 52.7
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 6.7e-98 361.7 320 59.4
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 5.7e-97 358.6 273 64.8
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 9.7e-97 357.8 273 65.2
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 9.7e-97 357.8 363 52.9
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 2.8e-96 356.3 330 56.7
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 8.2e-96 354.8 341 54.0
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.4e-95 354.0 276 62.7
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 7.0e-95 351.7 341 53.4
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 9.1e-95 351.3 341 54.0
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.2e-94 350.9 320 57.2
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 2.0e-94 350.1 323 55.1
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 2.0e-94 350.1 310 58.7
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 3.5e-94 349.4 341 53.7
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 4.5e-94 349.0 316 57.9
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 7.7e-94 348.2 316 57.3
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 7.7e-94 348.2 293 60.8
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 1.0e-93 347.8 310 58.7
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 1.0e-93 347.8 351 53.0
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.3e-93 347.4 314 58.9
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 2.9e-93 346.3 320 57.8
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 3.8e-93 345.9 316 58.2
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 6.5e-93 345.1 325 53.5
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.1e-92 344.4 314 58.6
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.2e-92 342.4 298 59.4
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 5.5e-92 342.0 288 60.4
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 1.2e-91 340.9 320 56.6
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.2e-91 340.9 318 56.3
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 8.0e-91 338.2 319 55.8
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.3e-90 336.7 322 54.0
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 4.8e-88 328.9 314 57.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 3.1e-87 326.2 321 52.0
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 9.1e-87 324.7 297 53.9
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 7.7e-86 321.6 239 67.4
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 1.9e-84 317.0 320 53.4
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 5.5e-84 315.5 276 57.6
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.8e-82 310.5 335 50.4
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 2.0e-81 307.0 326 49.4
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.1e-79 299.7 322 49.7
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 2.7e-78 296.6 290 53.8
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 3.5e-78 296.2 315 51.7
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 2.1e-75 287.0 271 55.0
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 5.7e-73 278.9 284 49.3
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 2.0e-62 243.8 261 52.5
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 7.8e-62 241.9 285 46.0
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 8.6e-61 238.4 277 45.8
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 7.3e-60 235.3 266 45.1
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.6e-59 234.2 265 46.4
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.1e-59 233.8 297 42.4
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 5.2e-58 229.2 190 62.6
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 1.7e-56 224.2 295 43.4
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.4e-55 221.1 274 44.2
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 7.5e-49 198.7 163 58.9
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.6e-35 154.5 173 49.1
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 2.8e-27 127.1 131 51.9
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 2.2e-24 117.5 127 49.6
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 8.4e-24 115.5 91 61.5
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 5.4e-23 112.8 87 59.8
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.3e-21 107.5 166 41.6
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.7e-16 91.3 87 56.3
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 8.4e-16 89.0 104 47.1
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 4.2e-15 86.7 120 45.0
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 4.2e-15 86.7 120 45.0
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 1.9e-12 77.8 77 55.8
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.3e-10 69.7 71 52.1
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 7.6e-09 65.9 119 38.7
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 1.2e-06 58.5 49 53.1
ATR0691G298 Amborella trichopoda HOM05D000559 ORTHO05D000596 1.6e-06 58.2 127 32.3
DCAR_013830 Daucus carota HOM05D004293 ORTHO05D005044 3.5e-06 57.0 132 36.4


User provided reference genes

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