Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 0.0e+00 1186.8 719 100.0
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.9e-165 587.0 746 55.1
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.8e-163 580.5 782 58.7
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 6.8e-163 578.6 757 55.7
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 2.6e-162 576.6 786 58.5
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 3.2e-160 569.7 786 53.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.9e-152 543.9 785 57.3
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.4e-152 543.5 677 62.0
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.0e-150 538.1 777 54.3
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.7e-150 537.3 786 55.2
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.3e-148 531.2 754 53.7
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 5.3e-147 525.8 667 61.5
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.2e-143 514.6 762 54.3
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.5e-138 497.7 807 52.2
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 8.4e-137 491.9 774 52.5
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 2.3e-134 483.8 677 56.3
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 3.9e-134 483.0 748 54.9
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.4e-131 474.6 769 55.9
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.9e-129 466.8 799 51.9
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 3.6e-119 433.3 795 50.7
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.6e-114 417.2 755 51.0
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.5e-114 416.4 769 46.3
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 7.7e-114 415.6 783 43.8
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.3e-113 414.8 779 48.0
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 5.0e-113 412.9 723 50.8
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.1e-110 402.9 767 46.8
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 8.8e-110 402.1 793 44.1
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.1e-107 395.2 767 45.1
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.1e-107 393.7 711 48.8
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.0e-105 388.7 713 49.8
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.0e-105 388.7 787 44.5
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.7e-105 387.9 766 48.2
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 8.5e-105 385.6 675 46.8
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.5e-104 384.8 781 47.2
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.5e-104 384.0 760 47.0
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 5.5e-104 382.9 764 45.3
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 1.2e-103 381.7 780 44.9
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 4.7e-103 379.8 764 49.7
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 8.0e-103 379.0 709 46.5
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 8.8e-102 375.6 766 45.4
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-101 375.2 766 45.3
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-101 375.2 766 45.3
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.2e-100 370.9 781 44.9
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 4.1e-99 366.7 784 45.2
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 9.1e-99 365.5 761 45.1
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.2e-97 360.9 708 47.0
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.2e-95 355.1 796 42.3
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.4e-94 351.7 782 42.5
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 8.8e-94 349.0 768 44.5
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 2.0e-93 347.8 774 47.7
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 4.4e-93 346.7 786 42.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 7.7e-90 335.9 806 45.7
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.3e-89 335.1 698 44.3
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.3e-89 335.1 682 43.7
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.2e-88 330.1 728 43.4
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.6e-87 328.2 754 47.9
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.1e-87 327.8 767 40.9
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 6.1e-87 326.2 720 46.0
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.2e-86 323.2 691 45.4
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.8e-86 322.8 761 42.0
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 8.8e-86 322.4 774 44.3
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.8e-83 314.7 572 45.5
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.6e-82 311.6 734 39.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.3e-81 308.5 756 45.6
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.7e-81 308.1 578 44.6
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 7.3e-80 302.8 705 43.7
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 8.0e-79 299.3 455 62.2
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.3e-78 297.7 761 43.4
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 6.8e-78 296.2 681 45.5
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 7.5e-77 292.7 711 41.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 3.7e-76 290.4 765 45.1
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.1e-75 288.9 747 41.2
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.6e-74 285.0 696 45.7
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.7e-74 284.3 744 36.8
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 8.6e-73 279.3 717 41.4
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 3.3e-72 277.3 703 45.7
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.6e-71 275.0 739 41.8
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 2.8e-71 274.2 754 41.9
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 8.0e-71 272.7 684 44.0
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.4e-70 271.9 692 38.4
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.1e-70 270.8 717 40.0
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 3.1e-70 270.8 793 43.5
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 8.9e-70 269.2 668 43.1
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.7e-68 263.8 670 37.5
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 6.4e-68 263.1 731 42.7
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 6.4e-68 263.1 643 48.4
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 4.1e-67 260.4 662 40.0
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-64 252.3 628 38.2
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 9.5e-64 249.2 416 45.4
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 9.5e-64 249.2 699 37.9
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 2.1e-63 248.1 723 41.9
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 3.6e-63 247.3 783 35.6
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.1e-62 244.2 763 39.4
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.4e-61 240.7 752 42.4
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 9.8e-61 239.2 825 41.0
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 2.9e-60 237.7 655 38.0
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.1e-56 225.7 755 37.6
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 5.6e-56 223.4 745 42.8
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.8e-54 218.4 755 40.4
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.0e-54 217.2 257 54.1
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.2e-53 215.7 749 37.7
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.2e-53 215.7 787 33.7
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.6e-53 214.5 712 38.2
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.7e-52 211.8 703 43.5
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.7e-52 211.8 696 41.8
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 3.8e-52 210.7 702 40.5
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 4.9e-52 210.3 638 35.7
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.4e-51 208.8 352 46.3
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.0e-49 202.6 315 47.9
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.9e-49 200.7 618 35.9
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.3e-48 197.2 745 31.5
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 7.3e-48 196.4 751 38.2
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 4.7e-47 193.7 561 35.8
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 8.1e-47 193.0 725 30.5
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 3.1e-46 191.0 730 33.2
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 5.2e-46 190.3 631 38.5
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.2e-46 190.3 760 32.6
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 3.4e-45 187.6 690 33.9
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 3.4e-45 187.6 678 37.6
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.4e-43 180.3 755 33.8
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.2e-42 179.1 404 41.3
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.0e-42 176.8 752 32.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.9e-40 171.8 606 33.8
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.3e-40 171.0 629 36.7
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 7.3e-40 169.9 715 32.2
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.3e-40 169.9 719 32.4
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 9.6e-40 169.5 751 32.5
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 2.8e-39 167.9 729 31.0
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 8.1e-39 166.4 640 34.2
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.1e-38 166.0 421 51.3
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.1e-38 164.5 634 34.9
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.1e-38 164.5 494 38.3
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 5.3e-38 163.7 661 35.6
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.4e-37 161.0 747 31.6
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.3e-36 159.1 644 35.7
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 2.9e-36 157.9 690 32.3
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.9e-35 155.2 680 29.6
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.2e-35 154.5 205 51.2
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.1e-33 147.1 728 33.8
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.1e-33 147.1 463 43.0
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.1e-31 141.7 706 29.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.1e-30 139.4 628 30.1
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 5.3e-30 137.1 207 45.9
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.4e-27 129.0 406 48.5
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.9e-27 128.6 120 65.0
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 5.5e-27 127.1 123 64.2
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.1e-26 125.2 146 55.5
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.1e-25 120.6 829 27.1
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 4.8e-23 114.0 143 50.3
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 7.6e-21 106.7 507 36.9
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 8.4e-20 103.2 511 32.1
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 8.4e-20 103.2 126 53.2
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.5e-16 92.4 515 31.1
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.9e-16 92.0 549 31.3
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.9e-16 92.0 549 31.3
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 5.7e-16 90.5 333 32.4
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.4e-14 85.9 603 30.8
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.8e-14 85.5 235 33.6
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 2.4e-14 85.1 574 32.8
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.2e-13 82.8 511 34.6
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.6e-13 81.6 217 35.5
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.7e-12 79.0 594 30.3
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.8e-12 77.8 200 44.5
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 5.0e-12 77.4 118 41.5
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 3.2e-11 74.7 100 51.0
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-10 72.8 337 32.3
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.1e-10 72.0 58 67.2
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.0e-09 69.7 176 34.1
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.7e-08 63.9 58 67.2
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 6.9e-06 57.0 86 44.2


User provided reference genes

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