Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0024377 Lotus japonicus HOM05D003211 ORTHO05D003621 3.7e-47 191.0 87 100.0
Lj4g0000768 Lotus japonicus HOM05D007499 ORTHO05D000174 1.6e-10 69.3 44 61.4
Lj1g0016702 Lotus japonicus HOM05D007499 ORTHO05D000174 8.1e-10 67.0 42 66.7
Lj3g0004944 Lotus japonicus HOM05D000122 ORTHO05D010668 4.0e-09 64.7 74 43.2
Lj3g0003106 Lotus japonicus HOM05D000122 ORTHO05D236983 2.0e-08 62.4 74 41.9
Lj1g0017581 Lotus japonicus HOM05D000353 ORTHO05D000174 3.4e-08 61.6 42 54.8
Lj2g0024420 Lotus japonicus HOM05D007499 ORTHO05D000174 1.7e-07 59.3 42 59.5
CSS0036463 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 1.1e-06 56.6 73 42.5
Gohir.A02G083400 Gossypium hirsutum HOM05D003211 ORTHO05D003621 1.1e-06 56.6 25 96.0
Lj1g0003320 Lotus japonicus HOM05D003211 ORTHO05D003621 1.1e-06 56.6 25 96.0
MBI08_g10498_MAGBIO Magnolia biondii HOM05D003211 ORTHO05D003621 1.1e-06 56.6 25 96.0
TPR.G38138 Trifolium pratense HOM05D003211 ORTHO05D003621 1.1e-06 56.6 25 96.0
Dinv31873 Davidia involucrata HOM05D003211 ORTHO05D003621 1.4e-06 56.2 25 96.0
Lalb_Chr03g0033451 Lupinus albus HOM05D003211 ORTHO05D003621 1.4e-06 56.2 25 96.0
CANSAT25G3811 Cannabis sativa HOM05D003211 ORTHO05D003621 2.4e-06 55.5 25 92.0
CiPaw.02G001000 Carya illinoinensis HOM05D003211 ORTHO05D003621 2.4e-06 55.5 25 92.0
Haze_22671 Corylus avellana HOM05D003211 ORTHO05D003621 2.4e-06 55.5 25 92.0
Medtr3g114080 Medicago truncatula HOM05D003211 ORTHO05D003621 2.4e-06 55.5 25 92.0
Psat5g012920 Pisum sativum HOM05D003211 ORTHO05D003621 2.4e-06 55.5 25 92.0
GSVIVG01009956001 Vitis vinifera HOM05D003211 ORTHO05D003621 2.4e-06 55.5 25 92.0
arahy.Tifrunner.gnm1.ann1.WVQ74Q Arachis hypogaea HOM05D003211 ORTHO05D003621 3.2e-06 55.1 25 92.0
arahy.Tifrunner.gnm1.ann1.YJZ5EZ Arachis hypogaea HOM05D003211 ORTHO05D003621 3.2e-06 55.1 25 92.0
Ca_15479_v3 Cicer arietinum L. HOM05D003211 ORTHO05D003621 3.2e-06 55.1 25 92.0
Eucgr.H00938 Eucalyptus grandis HOM05D003211 ORTHO05D003621 3.2e-06 55.1 25 92.0
Eucgr.H00950 Eucalyptus grandis HOM05D003211 ORTHO05D003621 3.2e-06 55.1 25 92.0
Manes.18G011114 Manihot esculenta HOM05D003211 ORTHO05D003621 3.2e-06 55.1 25 92.0
CSS0039753 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 4.2e-06 54.7 25 92.0
COL.COLO4_26114 Corchorus olitorius HOM05D003211 ORTHO05D003621 4.2e-06 54.7 25 92.0
Duzib093G0924 Durio zibethinus HOM05D003211 ORTHO05D003621 4.2e-06 54.7 25 92.0
Hma1.2p1_0023F.1_g015680 Hydrangea macrophylla HOM05D003211 ORTHO05D003621 4.2e-06 54.7 25 92.0
Thecc.08G048400 Theobroma cacao HOM05D003211 ORTHO05D003621 4.2e-06 54.7 25 92.0
Cfa013985 Carpinus fangiana HOM05D003211 ORTHO05D003621 5.4e-06 54.3 25 88.0
Glyma.04G023067 Glycine max HOM05D003211 ORTHO05D003621 5.4e-06 54.3 25 92.0
Glyma.06G023000 Glycine max HOM05D003211 ORTHO05D003621 5.4e-06 54.3 25 92.0
Nn5g30788 Nelumbo nucifera HOM05D003211 ORTHO05D003621 5.4e-06 54.3 25 88.0
Phvul.009G018000 Phaseolus vulgaris HOM05D003211 ORTHO05D003621 5.4e-06 54.3 25 92.0
QL02p012254 Quercus lobata HOM05D003211 ORTHO05D003621 5.4e-06 54.3 24 95.8
TWI12G0893 Tripterygium wilfordii HOM05D003211 ORTHO05D003621 5.4e-06 54.3 25 88.0
TWI36G1632 Tripterygium wilfordii HOM05D003211 ORTHO05D003621 5.4e-06 54.3 25 88.0
VMungo1309G1711 Vigna mungo HOM05D003211 ORTHO05D003621 5.4e-06 54.3 25 92.0
Dinv39540 Davidia involucrata HOM05D003211 ORTHO05D003621 7.1e-06 53.9 26 88.5
Gorai.005G112600 Gossypium raimondii HOM05D003211 ORTHO05D003621 7.1e-06 53.9 25 92.0
Cpa.g.sc26.295 Carica papaya HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
ClCG05G015550 Citrullus lanatus HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
Ciclev10000707m.g Citrus clementina HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
MELO3C003739.2 Cucumis melo HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
CsaV3_3G046000 Cucumis sativus L. HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
FvH4_2g38130 Fragaria vesca HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
FAN15G3158 Fragaria x ananassa HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
FAN20G1651 Fragaria x ananassa HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
MD08G1009900 Malus domestica HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
MD15G1009800 Malus domestica HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
Manes.05G144900 Manihot esculenta HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
Potri.002G018900 Populus trichocarpa HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
Prupe.1G362200 Prunus persica HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
RcHm_v2.0_Chr6g0303371 Rosa chinensis HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
Sabra02G0015100 Salix brachista HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
Sed0006879 Sechium edule HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0
Sed0016624 Sechium edule HOM05D003211 ORTHO05D003621 9.3e-06 53.5 25 88.0


User provided reference genes

Program Settings