Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 8.8e-56 219.9 102 100.0
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 6.8e-16 87.4 74 55.4
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.4e-15 84.7 73 54.8
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 4.9e-14 81.3 50 70.0
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 4.9e-14 81.3 50 70.0
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 1.4e-13 79.7 49 71.4
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 2.4e-13 79.0 49 69.4
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 3.2e-13 78.6 53 64.2
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 7.0e-13 77.4 49 67.3
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 7.0e-13 77.4 49 67.3
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 9.2e-13 77.0 49 67.3
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.6e-12 76.3 49 67.3
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.6e-12 76.3 49 67.3
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.6e-12 76.3 49 65.3
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 1.6e-12 76.3 49 65.3
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 2.0e-12 75.9 50 66.0
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 2.0e-12 75.9 49 67.3
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 2.0e-12 75.9 49 67.3
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.0e-12 75.9 49 67.3
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.0e-12 75.9 49 67.3
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 2.0e-12 75.9 49 63.3
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 2.0e-12 75.9 49 67.3
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 2.0e-12 75.9 49 67.3
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 2.0e-12 75.9 51 62.7
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 2.7e-12 75.5 49 67.3
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.7e-12 75.5 49 67.3
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.7e-12 75.5 49 67.3
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 3.5e-12 75.1 49 65.3
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.5e-12 75.1 51 60.8
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 4.6e-12 74.7 49 63.3
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 4.6e-12 74.7 58 53.4
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 4.6e-12 74.7 58 53.4
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 6.0e-12 74.3 49 63.3
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 7.8e-12 73.9 49 63.3
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 7.8e-12 73.9 49 63.3
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 1.0e-11 73.6 49 63.3
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.0e-11 73.6 49 63.3
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.0e-11 73.6 49 63.3
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 1.0e-11 73.6 49 65.3
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.3e-11 73.2 51 58.8
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 1.3e-11 73.2 49 63.3
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 1.3e-11 73.2 60 56.7
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 1.3e-11 73.2 49 63.3
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 1.3e-11 73.2 49 63.3
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 1.3e-11 73.2 58 51.7
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.3e-11 73.2 49 63.3
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.7e-11 72.8 55 54.5
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 1.7e-11 72.8 57 54.4
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.7e-11 72.8 50 60.0
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.7e-11 72.8 51 58.8
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.3e-11 72.4 51 58.8
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 2.3e-11 72.4 49 61.2
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 2.3e-11 72.4 49 63.3
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 2.3e-11 72.4 50 60.0
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 2.3e-11 72.4 49 63.3
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 3.0e-11 72.0 50 58.0
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 3.0e-11 72.0 49 59.2
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.9e-11 71.6 49 61.2
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 3.9e-11 71.6 49 61.2
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 5.0e-11 71.2 49 59.2
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 5.0e-11 71.2 49 59.2
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 5.0e-11 71.2 49 59.2
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 5.0e-11 71.2 49 59.2
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 5.0e-11 71.2 50 58.0
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 6.6e-11 70.9 49 61.2
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 6.6e-11 70.9 41 75.6
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 6.6e-11 70.9 49 63.3
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 6.6e-11 70.9 53 60.4
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 6.6e-11 70.9 49 63.3
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 8.6e-11 70.5 55 56.4
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 8.6e-11 70.5 49 57.1
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 1.1e-10 70.1 49 61.2
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.1e-10 70.1 49 61.2
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 1.1e-10 70.1 49 61.2
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.1e-10 70.1 49 59.2
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.1e-10 70.1 49 59.2
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.1e-10 70.1 49 61.2
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.1e-10 70.1 49 57.1
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.5e-10 69.7 49 59.2
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 1.5e-10 69.7 49 61.2
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.5e-10 69.7 49 57.1
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 1.9e-10 69.3 50 62.0
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 1.9e-10 69.3 49 59.2
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.9e-10 69.3 49 55.1
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 2.5e-10 68.9 49 57.1
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 2.5e-10 68.9 49 57.1
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 2.5e-10 68.9 51 54.9
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 2.5e-10 68.9 49 59.2
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 2.5e-10 68.9 49 63.3
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 2.5e-10 68.9 49 57.1
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 2.5e-10 68.9 49 57.1
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 2.5e-10 68.9 49 57.1
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 3.3e-10 68.6 52 55.8
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 3.3e-10 68.6 61 50.8
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 3.3e-10 68.6 52 55.8
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 3.3e-10 68.6 61 50.8
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 3.3e-10 68.6 49 57.1
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 3.3e-10 68.6 49 55.1
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 3.3e-10 68.6 49 63.3
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 4.3e-10 68.2 49 59.2
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 4.3e-10 68.2 50 62.0
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 4.3e-10 68.2 49 59.2
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 4.3e-10 68.2 51 54.9
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 5.6e-10 67.8 49 59.2
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 5.6e-10 67.8 61 50.8
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 5.6e-10 67.8 61 50.8
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 5.6e-10 67.8 61 50.8
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 5.6e-10 67.8 61 50.8
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 5.6e-10 67.8 61 50.8
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 5.6e-10 67.8 36 75.0
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 5.6e-10 67.8 49 59.2
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 5.6e-10 67.8 49 61.2
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 7.3e-10 67.4 53 49.1
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 7.3e-10 67.4 74 44.6
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 9.5e-10 67.0 49 61.2
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 1.2e-09 66.6 50 56.0
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 1.2e-09 66.6 50 56.0
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 1.2e-09 66.6 50 56.0
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 1.2e-09 66.6 50 56.0
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 1.2e-09 66.6 50 62.0
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.2e-09 66.6 47 57.4
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 1.2e-09 66.6 50 56.0
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.6e-09 66.2 50 58.0
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 1.6e-09 66.2 50 60.0
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 2.1e-09 65.9 49 57.1
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 2.1e-09 65.9 49 59.2
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.8e-09 65.5 52 53.8
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.8e-09 65.5 50 58.0
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 2.8e-09 65.5 49 59.2
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 3.6e-09 65.1 49 55.1
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.6e-09 65.1 50 58.0
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 3.6e-09 65.1 49 55.1
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 3.6e-09 65.1 50 56.0
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.6e-09 65.1 49 57.1
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.6e-09 65.1 49 57.1
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.6e-09 65.1 49 57.1
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 4.7e-09 64.7 50 60.0
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 4.7e-09 64.7 49 57.1
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 6.2e-09 64.3 49 57.1
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 8.0e-09 63.9 49 55.1
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 8.0e-09 63.9 49 53.1
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.1e-08 63.5 42 61.9
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.1e-08 63.5 49 57.1
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 1.4e-08 63.2 50 58.0
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 1.8e-08 62.8 49 51.0
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 2.3e-08 62.4 35 71.4
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 2.3e-08 62.4 50 58.0
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 2.3e-08 62.4 82 40.2
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 2.3e-08 62.4 49 53.1
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 3.1e-08 62.0 60 46.7
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.1e-08 62.0 49 55.1
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 4.0e-08 61.6 49 57.1
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 4.0e-08 61.6 60 46.7
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 5.2e-08 61.2 49 53.1
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 8.9e-08 60.5 50 56.0
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 8.9e-08 60.5 50 54.0
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 8.9e-08 60.5 35 68.6
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.2e-07 60.1 48 56.2
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.2e-07 60.1 35 71.4
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 1.5e-07 59.7 49 51.0
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.5e-07 59.7 49 51.0
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 2.6e-07 58.9 48 60.4
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 3.4e-07 58.5 49 49.0
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 5.8e-07 57.8 49 51.0
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 7.5e-07 57.4 46 50.0
Medtr3g069970 Medicago truncatula HOM05D004100 ORTHO05D004781 9.8e-07 57.0 52 50.0
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 9.8e-07 57.0 69 40.6
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.3e-06 56.6 49 51.0
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 2.9e-06 55.5 40 55.0
AL1G35910 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 8.3e-06 53.9 29 75.9
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 8.3e-06 53.9 29 75.9


User provided reference genes

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