Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0008224 Lotus japonicus HOM05D005957 ORTHO05D007318 4.5e-98 361.3 190 100.0
Glyma.02G235500 Glycine max HOM05D005957 ORTHO05D007318 4.3e-56 221.9 183 68.3
Glyma.14G203500 Glycine max HOM05D005957 ORTHO05D007318 2.8e-55 219.2 183 66.1
Phvul.008G248400 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 6.9e-54 214.5 178 66.3
VMungo0647G0754 Vigna mungo HOM05D005957 ORTHO05D007318 1.5e-53 213.4 182 65.4
Medtr5g075190 Medicago truncatula HOM05D005957 ORTHO05D007318 2.9e-52 209.1 181 64.6
Psat2g052120 Pisum sativum HOM05D005957 ORTHO05D007318 2.9e-52 209.1 185 65.4
TPR.G25771 Trifolium pratense HOM05D005957 ORTHO05D007318 1.0e-49 200.7 181 63.0
Sabra19G0126000 Salix brachista HOM05D005957 ORTHO05D007318 2.4e-46 189.5 182 55.5
Lalb_Chr17g0345591 Lupinus albus HOM05D005957 ORTHO05D007318 2.6e-45 186.0 178 58.4
Haze_24453 Corylus avellana HOM05D005957 ORTHO05D007318 2.2e-44 183.0 182 56.6
Potri.013G155300 Populus trichocarpa HOM05D005957 ORTHO05D007318 4.9e-44 181.8 178 56.7
Potri.019G128400 Populus trichocarpa HOM05D005957 ORTHO05D007318 1.9e-43 179.9 180 54.4
CiPaw.13G065100 Carya illinoinensis HOM05D005957 ORTHO05D007318 4.2e-43 178.7 182 51.6
Cfa011817 Carpinus fangiana HOM05D005957 ORTHO05D007318 1.2e-42 177.2 183 54.6
QL01p025125 Quercus lobata HOM05D005957 ORTHO05D007318 1.2e-42 177.2 181 53.6
Duzib168G0649 Durio zibethinus HOM05D005957 ORTHO05D007318 3.5e-42 175.6 176 52.8
GSVIVG01024580001 Vitis vinifera HOM05D005957 ORTHO05D007318 4.6e-42 175.3 183 53.0
Cc01_g15210 Coffea canephora HOM05D005957 ORTHO05D007318 3.9e-41 172.2 175 53.7
COL.COLO4_11196 Corchorus olitorius HOM05D005957 ORTHO05D007318 8.7e-41 171.0 183 55.2
Manes.18G139500 Manihot esculenta HOM05D005957 ORTHO05D007318 1.1e-40 170.6 185 52.4
Hma1.2p1_0119F.1_g056870 Hydrangea macrophylla HOM05D005957 ORTHO05D007318 2.5e-40 169.5 183 53.6
CiPaw.14G051700 Carya illinoinensis HOM05D005957 ORTHO05D007318 7.4e-40 167.9 181 49.7
CANSAT54G0691 Cannabis sativa HOM05D005957 ORTHO05D007318 9.6e-40 167.5 184 53.8
Nitab4.5_0007927g0010 Nicotiana tabacum HOM05D005957 ORTHO05D007318 9.6e-40 167.5 180 53.9
Atru.chr1.2524 Acer truncatum HOM05D005957 ORTHO05D007318 2.8e-39 166.0 184 50.5
PGSC0003DMG400046061 Solanum tuberosum HOM05D005957 ORTHO05D007318 4.8e-39 165.2 166 57.2
Prupe.6G042800 Prunus persica HOM05D005957 ORTHO05D007318 6.2e-39 164.9 183 50.8
Nitab4.5_0000002g0080 Nicotiana tabacum HOM05D005957 ORTHO05D007318 1.4e-38 163.7 180 52.2
Solyc01g090870.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 3.1e-38 162.5 166 54.2
Sopen01g036610 Solanum pennellii HOM05D005957 ORTHO05D007318 3.1e-38 162.5 166 54.2
Ciclev10003853m.g Citrus clementina HOM05D005957 ORTHO05D007318 1.5e-37 160.2 202 49.5
RcHm_v2.0_Chr5g0072641 Rosa chinensis HOM05D005957 ORTHO05D007318 1.5e-37 160.2 173 54.9
Ca_05700_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 2.6e-37 159.5 124 66.1
Ca_30026_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 2.6e-37 159.5 124 66.1
MD11G1055300 Malus domestica HOM05D005957 ORTHO05D007318 2.6e-37 159.5 188 50.0
Oeu064677.1 Olea europaea HOM05D005957 ORTHO05D007318 2.6e-37 159.5 172 51.2
FAN21G1009 Fragaria x ananassa HOM05D005957 ORTHO05D007318 5.8e-37 158.3 180 52.2
FvH4_3g40300 Fragaria vesca HOM05D005957 ORTHO05D007318 3.8e-36 155.6 172 53.5
Peaxi162Scf01692g00003 Petunia axillaris HOM05D005957 ORTHO05D007318 3.8e-36 155.6 176 52.3
CsaV3_6G019090 Cucumis sativus L. HOM05D005957 ORTHO05D007318 4.9e-36 155.2 179 50.3
MD03G1053700 Malus domestica HOM05D005957 ORTHO05D007318 6.5e-36 154.8 189 50.8
Nitab4.5_0002091g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 6.5e-36 154.8 184 50.0
Peaxi162Scf00390g00049 Petunia axillaris HOM05D005957 ORTHO05D007318 1.1e-35 154.1 176 50.6
Aqoxy2G00718 Aquilegia oxysepala HOM05D005957 ORTHO05D007318 2.5e-35 152.9 173 53.8
Nitab4.5_0002759g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 3.2e-35 152.5 171 53.2
Sed0019639 Sechium edule HOM05D005957 ORTHO05D007318 5.5e-35 151.8 178 51.1
ClCG02G019100 Citrullus lanatus HOM05D005957 ORTHO05D007318 7.1e-35 151.4 181 49.7
Gohir.A05G129400 Gossypium hirsutum HOM05D005957 ORTHO05D007318 1.2e-34 150.6 193 48.7
Solyc06g082450.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 1.2e-34 150.6 167 53.3
Migut.D00827 Erythranthe guttata HOM05D005957 ORTHO05D007318 3.5e-34 149.1 187 49.2
Cpa.g.sc2.317 Carica papaya HOM05D005957 ORTHO05D007318 4.6e-34 148.7 103 69.9
Sabra13G0125100 Salix brachista HOM05D005957 ORTHO05D007318 4.6e-34 148.7 92 72.8
MELO3C026874.2 Cucumis melo HOM05D005957 ORTHO05D007318 7.9e-34 147.9 180 50.6
MBI03_g02190_MAGBIO Magnolia biondii HOM05D005957 ORTHO05D007318 7.9e-34 147.9 166 48.8
TWI79G1455 Tripterygium wilfordii HOM05D005957 ORTHO05D007318 2.3e-33 146.4 98 72.4
TAR623G0423 Trochodendron aralioides HOM05D005957 ORTHO05D007318 3.0e-33 146.0 93 73.1
Thecc.09G362300 Theobroma cacao HOM05D005957 ORTHO05D007318 8.7e-33 144.4 90 74.4
Gorai.009G137600 Gossypium raimondii HOM05D005957 ORTHO05D007318 1.5e-32 143.7 185 49.2
CSS0038993 Camellia sinensis var. sinensis HOM05D005957 ORTHO05D007318 4.3e-32 142.1 90 75.6
THA.LOC104800785 Tarenaya hassleriana HOM05D005957 ORTHO05D007318 4.3e-32 142.1 190 43.2
Dinv04837 Davidia involucrata HOM05D005957 ORTHO05D007318 9.6e-32 141.0 93 73.1
FAN16G3236 Fragaria x ananassa HOM05D005957 ORTHO05D007318 9.6e-32 141.0 157 54.1
FAN11G2330 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.3e-31 140.6 157 54.1
Sopen06g033830 Solanum pennellii HOM05D005957 ORTHO05D007318 4.8e-31 138.7 98 71.4
Ah.08g217120 Amaranthus hybridus HOM05D005957 ORTHO05D007318 1.1e-30 137.5 97 64.9
Phvul.006G076900 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 1.1e-30 137.5 138 55.8
FAN25G1085 Fragaria x ananassa HOM05D005957 ORTHO05D007318 5.3e-30 135.2 127 60.6
Gohir.D05G134050 Gossypium hirsutum HOM05D005957 ORTHO05D007318 6.9e-30 134.8 91 73.6
Migut.N00743 Erythranthe guttata HOM05D005957 ORTHO05D007318 9.0e-30 134.4 195 43.6
Aa31LG5G6330 Aethionema arabicum HOM05D005957 ORTHO05D007318 1.5e-29 133.7 206 42.7
Nn5g26879 Nelumbo nucifera HOM05D005957 ORTHO05D007318 1.5e-29 133.7 95 70.5
CAN.G1872.4 Capsicum annuum HOM05D005957 ORTHO05D007318 5.9e-29 131.7 91 69.2
AL4G25260 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 7.6e-29 131.3 193 44.0
Rhsim13G0060900 Rhododendron simsii HOM05D005957 ORTHO05D007318 1.3e-28 130.6 88 71.6
SGA_v2.0_scaffold77G25368 Striga asiatica HOM05D005957 ORTHO05D007318 1.7e-28 130.2 173 45.1
Eucgr.J01842 Eucalyptus grandis HOM05D005957 ORTHO05D007318 2.2e-28 129.8 123 56.9
Carub.0004s1155 Capsella rubella HOM05D005957 ORTHO05D007318 2.9e-28 129.4 196 43.4
EL10Ac7g16454 Beta vulgaris HOM05D005957 ORTHO05D007318 6.5e-28 128.3 97 62.9
CARHR123750 Cardamine hirsuta HOM05D005957 ORTHO05D007318 8.4e-28 127.9 206 44.2
AT2G30395 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 1.9e-27 126.7 195 44.6
ECA236G1285 Erigeron canadensis HOM05D005957 ORTHO05D007318 1.9e-27 126.7 94 62.8
Lsat_1_v5_gn_0_40840 Lactuca sativa HOM05D005957 ORTHO05D007318 1.9e-27 126.7 94 67.0
vmacro02888 Vaccinium macrocarpon HOM05D005957 ORTHO05D007318 2.5e-27 126.3 89 68.5
MSTRG.17909 Avicennia marina HOM05D005957 ORTHO05D007318 5.5e-27 125.2 87 66.7
PSO170G5428 Papaver somniferum HOM05D005957 ORTHO05D007318 5.5e-27 125.2 95 66.3
PSO017G7297 Papaver somniferum HOM05D005957 ORTHO05D007318 9.3e-27 124.4 95 66.3
Oeu011373.1 Olea europaea HOM05D005957 ORTHO05D007318 1.2e-26 124.0 105 61.0
HanXRQChr01g0028631 Helianthus annuus HOM05D005957 ORTHO05D007318 3.5e-26 122.5 165 44.2
BcaB02g10322 Brassica carinata HOM05D005957 ORTHO05D007318 1.3e-25 120.6 201 43.8
DCAR_023195 Daucus carota HOM05D005957 ORTHO05D007318 1.3e-25 120.6 65 81.5
Thhalv10017867m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 1.8e-25 120.2 202 41.6
HanXRQChr17g0565391 Helianthus annuus HOM05D005957 ORTHO05D007318 1.8e-25 120.2 163 44.8
Dinv28722 Davidia involucrata HOM05D005957 ORTHO05D007318 2.3e-25 119.8 71 76.1
Sp4g12950 Schrenkiella parvula HOM05D005957 ORTHO05D007318 3.0e-25 119.4 199 43.7
PGR119G2032 Punica granatum HOM05D005957 ORTHO05D007318 3.9e-25 119.0 195 43.1
SalBow6G3501 Salvia bowleyana HOM05D005957 ORTHO05D007318 1.9e-24 116.7 86 65.1
BcaC02g11133 Brassica carinata HOM05D005957 ORTHO05D007318 2.5e-24 116.3 203 40.4
A05p15090 Brassica napus HOM05D005957 ORTHO05D007318 2.5e-24 116.3 205 40.0
BolC4t23551H Brassica oleracea HOM05D005957 ORTHO05D007318 3.3e-24 115.9 203 40.4
BraA05t20430Z Brassica rapa HOM05D005957 ORTHO05D007318 3.3e-24 115.9 201 42.8
ATR0681G143 Amborella trichopoda HOM05D005957 ORTHO05D007318 1.3e-23 114.0 161 44.1
A04p23170 Brassica napus HOM05D005957 ORTHO05D007318 1.3e-23 114.0 195 43.6
Thhalv10017852m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 1.3e-23 114.0 202 41.1
C04p20120 Brassica napus HOM05D005957 ORTHO05D007318 3.7e-23 112.5 195 39.5
BcaB06g28364 Brassica carinata HOM05D005957 ORTHO05D007318 6.3e-23 111.7 195 41.0
BcaC02g08022 Brassica carinata HOM05D005957 ORTHO05D007318 1.8e-22 110.2 195 42.6
Sc21g0004870 Simmondsia chinensis HOM05D005957 ORTHO05D007318 2.4e-22 109.8 99 53.5
C04p59320 Brassica napus HOM05D005957 ORTHO05D007318 3.1e-22 109.4 195 41.5
BraA04t17844Z Brassica rapa HOM05D005957 ORTHO05D007318 6.9e-22 108.2 202 41.1
Dinv12270 Davidia involucrata HOM05D005957 ORTHO05D007318 3.4e-21 105.9 73 72.6
BolC4t27440H Brassica oleracea HOM05D005957 ORTHO05D007318 1.0e-20 104.4 202 39.6
Ah.15g095100 Amaranthus hybridus HOM05D005957 ORTHO05D007318 1.7e-20 103.6 73 65.8
Sp1g05630 Schrenkiella parvula HOM05D005957 ORTHO05D007318 1.7e-20 103.6 176 40.9
CARHR006600 Cardamine hirsuta HOM05D005957 ORTHO05D007318 5.0e-20 102.1 161 39.8
Os07g0679100 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 6.5e-20 101.7 116 50.9
AL1G16950 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 1.1e-19 100.9 172 40.1
Carub.0001s0622 Capsella rubella HOM05D005957 ORTHO05D007318 1.9e-19 100.1 166 40.4
Os05g0328300 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 1.9e-19 100.1 72 62.5
AT1G06923 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 3.2e-19 99.4 162 39.5
Thhalv10009633m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 9.4e-19 97.8 154 39.6
AUR62007156 Chenopodium quinoa HOM05D003140 ORTHO05D003851 6.1e-18 95.1 106 47.2
Zm00001eb350230 Zea mays HOM05D005957 ORTHO05D007318 3.9e-17 92.4 98 48.0
BcaC07g42550 Brassica carinata HOM05D005957 ORTHO05D007318 8.8e-17 91.3 74 56.8
BcaC07g42036 Brassica carinata HOM05D005957 ORTHO05D007318 9.7e-16 87.8 74 56.8
BcaC07g42037 Brassica carinata HOM05D005957 ORTHO05D007318 9.7e-16 87.8 74 56.8
BraA09t42007Z Brassica rapa HOM05D005957 ORTHO05D007318 9.7e-16 87.8 158 37.3
A09p66670 Brassica napus HOM05D005957 ORTHO05D007318 1.7e-15 87.0 158 38.0
C08p50900 Brassica napus HOM05D005957 ORTHO05D007318 1.7e-15 87.0 104 46.2
BolC8t52618H Brassica oleracea HOM05D005957 ORTHO05D007318 1.7e-15 87.0 104 46.2
Zm00001eb330630 Zea mays HOM05D005957 ORTHO05D007318 1.4e-14 84.0 61 62.3
SEGI_34718 Sequoiadendron giganteum HOM05D005957 ORTHO05D007318 1.8e-09 67.0 60 46.7
CARHR123780 Cardamine hirsuta HOM05D005957 ORTHO05D007318 2.8e-07 59.7 166 38.0


User provided reference genes

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