Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 6.3e-101 370.9 208 100.0
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 4.5e-67 258.5 211 70.6
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 2.9e-66 255.8 211 69.7
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.7e-61 240.0 208 68.3
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.8e-60 236.5 204 68.1
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 3.5e-59 232.3 204 67.2
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.1e-57 227.3 204 67.2
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 2.1e-56 223.0 217 61.3
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 1.5e-54 216.9 218 61.0
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.2e-53 213.0 212 62.7
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 9.2e-52 207.6 197 62.9
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 6.0e-51 204.9 225 56.4
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 5.0e-50 201.8 197 59.4
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 6.6e-50 201.4 201 58.7
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 7.3e-49 198.0 196 60.2
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 2.1e-48 196.4 202 57.9
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.3e-47 193.0 211 58.8
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 3.1e-47 192.6 208 56.7
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 3.1e-47 192.6 189 61.9
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 1.2e-46 190.7 196 58.7
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.1e-44 184.1 202 54.0
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 3.5e-43 179.1 206 54.4
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 1.7e-42 176.8 215 52.6
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 3.9e-42 175.6 220 51.4
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.5e-41 173.7 205 56.6
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.9e-41 173.3 209 52.2
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 4.3e-41 172.2 204 55.4
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 4.3e-41 172.2 184 57.6
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 4.3e-41 172.2 196 55.1
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 5.6e-41 171.8 209 50.2
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 5.6e-41 171.8 200 54.5
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 7.3e-41 171.4 191 51.8
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 9.5e-41 171.0 218 51.8
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 9.5e-41 171.0 186 59.1
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 1.6e-40 170.2 201 53.7
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.1e-40 169.9 219 50.7
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 2.8e-40 169.5 211 53.1
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 8.1e-40 167.9 183 58.5
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.4e-39 167.2 208 52.4
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.8e-39 166.8 170 55.3
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 1.8e-39 166.8 186 56.5
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 2.3e-39 166.4 168 57.7
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 2.3e-39 166.4 186 55.9
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 4.0e-39 165.6 185 55.7
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 6.8e-39 164.9 204 53.9
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 8.9e-39 164.5 202 52.5
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 1.2e-38 164.1 196 53.1
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 1.2e-38 164.1 185 53.5
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.6e-38 162.9 216 49.1
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 4.4e-38 162.2 205 53.2
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 5.8e-38 161.8 208 52.9
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 7.5e-38 161.4 170 60.6
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 7.5e-38 161.4 184 54.3
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.9e-37 159.5 208 52.4
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 8.3e-37 157.9 204 51.0
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.1e-36 157.5 223 50.2
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.1e-36 157.5 201 52.2
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 1.4e-36 157.1 211 48.8
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 1.4e-36 157.1 197 48.7
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.9e-36 156.8 191 51.3
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 4.1e-36 155.6 238 44.5
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 9.2e-36 154.5 189 51.9
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.2e-35 154.1 189 49.7
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 1.2e-35 154.1 244 44.3
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 2.1e-35 153.3 211 48.8
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 3.5e-35 152.5 223 48.4
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 6.0e-35 151.8 206 48.1
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 7.8e-35 151.4 206 49.0
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 7.8e-35 151.4 217 45.2
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 1.0e-34 151.0 208 51.4
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 1.7e-34 150.2 191 49.2
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 1.7e-34 150.2 204 50.0
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 3.0e-34 149.4 196 49.0
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.0e-34 149.4 221 47.1
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 3.9e-34 149.1 197 48.7
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 5.1e-34 148.7 199 49.2
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 5.1e-34 148.7 157 55.4
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 8.6e-34 147.9 175 56.0
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 2.5e-33 146.4 152 56.6
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 2.5e-33 146.4 188 49.5
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.5e-33 146.4 201 47.3
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 3.3e-33 146.0 197 46.2
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 4.3e-33 145.6 194 48.5
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 9.5e-33 144.4 195 47.7
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 9.5e-33 144.4 223 46.6
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.6e-32 143.7 194 48.5
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 1.6e-32 143.7 180 47.8
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 1.6e-32 143.7 157 53.5
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 8.1e-32 141.4 185 50.3
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 2.4e-31 139.8 252 40.5
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 2.4e-31 139.8 178 49.4
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 3.1e-31 139.4 198 48.0
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 4.0e-31 139.0 197 46.7
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 3.4e-30 136.0 192 46.4
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 5.8e-30 135.2 188 48.9
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 5.8e-30 135.2 188 48.9
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 1.7e-29 133.7 155 56.8
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 4.2e-28 129.0 190 44.7
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 5.4e-28 128.6 186 44.6
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 7.1e-28 128.3 154 52.6
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 2.1e-27 126.7 192 43.8
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 2.7e-27 126.3 175 46.9
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 2.7e-27 126.3 175 46.9
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 3.5e-27 125.9 154 51.9
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 4.6e-27 125.6 181 47.0
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 6.0e-27 125.2 192 43.8
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 7.8e-27 124.8 184 47.3
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 5.1e-26 122.1 185 45.4
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 1.1e-25 120.9 204 40.2
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.5e-25 120.6 189 41.8
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 2.5e-25 119.8 175 46.3
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 5.6e-25 118.6 147 51.7
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 3.6e-24 115.9 184 46.7
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 3.1e-23 112.8 103 64.1
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 2.9e-21 106.3 120 50.8
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 6.4e-21 105.1 184 42.9
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 6.4e-21 105.1 184 42.9
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 6.4e-21 105.1 184 42.9
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 6.4e-21 105.1 189 45.0
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.1e-20 104.4 127 53.5
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 4.2e-20 102.4 190 42.1
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 7.1e-20 101.7 223 39.5
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 2.7e-19 99.8 197 41.1
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 3.0e-18 96.3 148 46.6
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 5.1e-18 95.5 187 41.2
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.1e-17 94.4 81 69.1
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 1.5e-17 94.0 200 34.0
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 3.6e-16 89.4 192 37.5
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 2.4e-15 86.7 100 51.0
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 6.9e-15 85.1 189 37.6
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 2.6e-14 83.2 164 37.8
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 1.3e-13 80.9 92 52.2
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 1.7e-13 80.5 186 34.4
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 2.2e-13 80.1 248 32.7
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 6.4e-13 78.6 109 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 2.1e-11 73.6 166 33.1
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.0e-10 71.2 95 49.5
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.0e-10 71.2 95 49.5
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.8e-10 70.5 193 30.6
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 6.7e-10 68.6 85 55.3
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.1e-09 67.8 138 38.4
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 4.8e-08 62.4 84 51.2
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 3.4e-06 56.2 99 42.4
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 5.8e-06 55.5 108 39.8


User provided reference genes

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