Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 4.9e-108 394.4 192 100.0
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 2.3e-97 359.0 192 92.2
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 3.9e-97 358.2 192 91.7
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 1.5e-96 356.3 192 90.1
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 1.2e-95 353.2 192 90.1
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 2.8e-95 352.1 192 89.1
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 2.8e-95 352.1 191 90.1
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 4.7e-95 351.3 192 88.5
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 4.7e-95 351.3 190 90.0
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 8.1e-95 350.5 190 89.5
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 1.2e-93 346.7 194 88.1
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 3.4e-93 345.1 192 88.0
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 7.6e-93 344.0 192 87.5
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 2.9e-92 342.0 192 87.0
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 2.9e-92 342.0 192 87.5
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 4.9e-92 341.3 192 87.5
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 8.4e-92 340.5 191 88.0
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 1.1e-91 340.1 193 86.0
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 2.4e-91 339.0 193 87.0
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 3.2e-91 338.6 192 85.9
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 4.2e-91 338.2 193 85.0
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 4.2e-91 338.2 192 85.9
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 7.1e-91 337.4 193 84.5
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 1.6e-90 336.3 192 84.9
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 1.6e-90 336.3 193 85.0
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 1.6e-90 336.3 192 85.4
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 1.6e-90 336.3 192 86.5
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.6e-90 336.3 192 86.5
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 2.1e-90 335.9 193 85.0
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 2.1e-90 335.9 192 83.9
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 3.5e-90 335.1 192 82.3
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 4.6e-90 334.7 191 84.3
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 4.6e-90 334.7 192 82.3
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 6.0e-90 334.3 192 85.9
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 7.8e-90 334.0 192 84.9
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 7.8e-90 334.0 192 84.9
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 7.8e-90 334.0 192 84.9
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 7.8e-90 334.0 192 82.3
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 7.8e-90 334.0 192 84.4
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.0e-89 333.6 192 84.9
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 1.3e-89 333.2 192 83.3
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 1.3e-89 333.2 191 84.8
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 1.7e-89 332.8 193 86.0
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 1.7e-89 332.8 192 85.9
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 1.7e-89 332.8 192 83.9
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.7e-89 332.8 192 85.4
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.3e-89 332.4 192 85.4
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 3.0e-89 332.0 192 84.9
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 3.0e-89 332.0 192 84.9
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 3.9e-89 331.6 192 82.8
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 3.9e-89 331.6 192 82.3
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 3.9e-89 331.6 192 80.7
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 6.6e-89 330.9 192 82.8
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 6.6e-89 330.9 192 82.8
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 1.1e-88 330.1 192 83.9
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.9e-88 329.3 192 82.8
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 1.9e-88 329.3 193 82.9
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 1.9e-88 329.3 192 81.8
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 2.5e-88 328.9 189 84.1
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 7.3e-88 327.4 193 85.0
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 7.3e-88 327.4 192 83.9
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 9.6e-88 327.0 192 81.8
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 1.3e-87 326.6 193 83.4
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 2.8e-87 325.5 193 82.9
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 2.8e-87 325.5 193 82.9
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 3.6e-87 325.1 192 82.3
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 4.8e-87 324.7 192 81.2
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 8.1e-87 323.9 192 79.2
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 1.1e-86 323.6 193 82.4
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 1.1e-86 323.6 193 82.4
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 1.4e-86 323.2 192 82.3
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 1.4e-86 323.2 192 80.2
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.4e-86 323.2 192 81.2
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 1.4e-86 323.2 190 80.5
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 2.4e-86 322.4 192 81.8
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 2.4e-86 322.4 192 80.2
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 3.1e-86 322.0 194 80.9
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 3.1e-86 322.0 193 79.8
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 3.1e-86 322.0 192 82.3
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 4.0e-86 321.6 193 81.3
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 4.0e-86 321.6 192 80.2
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 5.3e-86 321.2 193 81.3
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 5.3e-86 321.2 193 81.3
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 5.3e-86 321.2 193 81.3
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 9.0e-86 320.5 193 80.8
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 9.0e-86 320.5 193 80.8
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 1.5e-85 319.7 193 81.3
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.5e-85 319.7 192 79.2
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 2.0e-85 319.3 192 78.1
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 2.0e-85 319.3 193 82.4
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 2.6e-85 318.9 192 80.2
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 2.6e-85 318.9 193 80.3
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 4.5e-85 318.2 193 80.8
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 1.7e-84 316.2 192 80.2
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 2.9e-84 315.5 192 80.2
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 1.4e-83 313.2 192 79.2
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 1.9e-83 312.8 192 79.7
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 3.2e-83 312.0 192 78.6
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 5.4e-83 311.2 192 77.1
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 2.7e-82 308.9 192 76.6
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 3.5e-82 308.5 192 77.6
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 2.3e-81 305.8 192 78.6
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 1.5e-80 303.1 187 78.1
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 4.3e-80 301.6 192 75.0
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 7.4e-80 300.8 181 82.9
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.8e-79 298.9 192 77.1
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 5.8e-69 264.6 160 81.9
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 8.4e-68 260.8 159 79.2
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.9e-67 259.6 189 63.5
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 3.2e-67 258.8 158 80.4
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 7.1e-67 257.7 192 65.6
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 1.0e-65 253.8 149 85.2
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.0e-65 253.8 192 65.6
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.0e-65 252.3 192 65.6
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.8e-63 245.7 193 65.3
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.7e-60 236.5 151 79.5
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 4.8e-55 218.4 194 54.1
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 8.2e-55 217.6 186 54.8
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.4e-54 216.1 186 54.8
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 9.1e-54 214.2 150 70.7
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 5.9e-53 211.5 192 55.2
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 7.2e-51 204.5 184 54.3
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.7e-47 193.4 190 51.1
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 5.9e-45 184.9 185 56.2
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 1.4e-41 173.7 190 51.6
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 2.3e-41 172.9 194 49.0
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 1.7e-36 156.8 92 83.7
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 8.0e-34 147.9 91 76.9
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 9.4e-27 124.4 79 74.7
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 6.8e-25 118.2 191 37.7
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 1.2e-24 117.5 186 36.0
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 1.2e-21 107.5 51 94.1
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.3e-12 76.6 163 31.3
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 3.4e-08 62.8 28 96.4
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 3.4e-08 62.8 31 87.1


User provided reference genes

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