Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 4.0e-190 667.9 336 100.0
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 9.7e-152 540.4 371 72.5
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 4.8e-151 538.1 377 73.7
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 3.1e-150 535.4 373 74.3
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 4.5e-149 531.6 383 72.1
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 5.9e-149 531.2 374 74.3
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 1.3e-148 530.0 371 73.3
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.4e-145 520.0 374 73.3
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 1.8e-145 519.6 378 73.3
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 2.3e-145 519.2 372 73.1
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 2.5e-144 515.8 372 72.3
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 1.8e-137 493.0 366 67.2
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.7e-132 476.5 356 66.9
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 8.5e-132 474.2 370 64.3
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 1.1e-131 473.8 356 66.3
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 3.2e-131 472.2 371 64.2
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.2e-130 470.3 367 64.6
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 1.2e-130 470.3 371 63.3
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.6e-130 469.9 371 63.3
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.0e-128 463.0 365 64.4
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 2.6e-128 462.6 371 63.1
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.1e-126 457.2 373 63.0
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.8e-126 456.4 372 63.7
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 1.8e-126 456.4 373 62.5
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 3.1e-126 455.7 365 64.4
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 3.1e-126 455.7 379 62.0
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 4.1e-126 455.3 370 62.7
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 7.0e-126 454.5 371 63.1
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 1.2e-125 453.8 369 62.3
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 4.5e-125 451.8 378 60.3
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.0e-124 450.7 374 62.0
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.0e-124 450.7 370 62.7
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 2.2e-124 449.5 376 62.2
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 3.8e-124 448.7 375 63.7
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 7.2e-123 444.5 370 61.9
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 9.4e-123 444.1 371 61.7
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 2.7e-122 442.6 357 64.1
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 6.1e-122 441.4 376 60.4
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 4.0e-121 438.7 369 59.9
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 7.5e-120 434.5 375 61.6
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 9.7e-120 434.1 376 58.5
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 3.7e-119 432.2 382 59.7
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.4e-118 430.3 379 58.6
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.8e-118 429.9 366 61.2
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.4e-118 429.5 379 58.3
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 5.3e-118 428.3 376 57.7
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.6e-117 426.8 337 65.9
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 2.7e-117 426.0 336 65.5
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.5e-117 425.2 379 58.0
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-116 424.1 368 59.8
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 1.3e-116 423.7 374 59.4
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 5.0e-116 421.8 368 59.5
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.0e-116 421.8 368 59.5
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.0e-116 421.8 368 59.5
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.1e-115 420.6 368 59.2
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.7e-114 416.0 368 58.7
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.3e-113 412.9 368 56.8
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 7.5e-112 407.9 365 59.2
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 9.8e-112 407.5 374 57.8
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.3e-111 407.1 374 57.8
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.7e-111 406.8 365 60.0
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 3.7e-111 405.6 368 59.0
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 4.8e-111 405.2 365 59.5
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 6.3e-111 404.8 368 58.2
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 1.8e-110 403.3 364 59.3
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 4.1e-110 402.1 350 61.4
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.6e-109 400.2 377 56.8
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 2.0e-109 399.8 367 58.9
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 3.5e-109 399.1 378 56.6
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.0e-108 397.5 377 56.5
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.3e-108 396.4 361 57.6
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 2.9e-108 396.0 378 56.9
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 1.1e-107 394.0 372 56.5
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.5e-107 392.9 378 56.1
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.5e-107 392.9 380 55.3
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 4.2e-107 392.1 373 56.6
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 4.2e-107 392.1 356 56.5
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 5.5e-107 391.7 377 55.2
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 7.2e-107 391.3 373 56.6
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 7.2e-107 391.3 373 56.6
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 7.2e-107 391.3 379 55.9
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-106 390.6 380 55.0
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 2.1e-106 389.8 366 56.6
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 3.6e-106 389.0 374 56.1
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 6.1e-106 388.3 374 56.1
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.0e-105 387.5 380 54.7
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 1.0e-105 387.5 349 58.2
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.8e-105 386.7 372 56.5
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.3e-105 386.3 376 56.1
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 2.3e-105 386.3 377 56.0
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 8.9e-105 384.4 377 54.9
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.4e-104 382.5 372 55.6
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.4e-104 382.5 371 55.3
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 5.7e-104 381.7 378 54.5
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.4e-102 375.2 358 54.2
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.6e-101 373.6 372 54.8
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.0e-100 370.9 367 54.8
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.3e-100 369.8 353 53.5
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.9e-100 369.0 377 51.2
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 1.5e-99 367.1 378 52.1
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.9e-99 366.7 365 54.2
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 8.9e-97 357.8 364 50.8
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.7e-87 327.0 340 52.4
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.7e-87 327.0 340 52.4
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.7e-87 327.0 464 41.4
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 1.9e-86 323.6 372 47.8
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 4.1e-86 322.4 370 47.3
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.3e-84 317.4 364 47.8
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.4e-81 307.4 260 60.4
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 5.4e-78 295.4 247 57.5
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.5e-75 286.6 366 44.0
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 6.8e-73 278.5 354 44.4
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 2.6e-72 276.6 377 42.7
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 8.1e-66 255.0 313 46.0
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.3e-63 247.7 361 40.2
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.6e-61 240.7 347 41.5
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 8.1e-58 228.4 370 38.4
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.5e-56 224.2 198 57.1
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 4.5e-56 222.6 182 62.6
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 7.1e-54 215.3 202 51.0
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 6.7e-52 208.8 233 50.6
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.2e-45 188.0 240 41.7
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 6.7e-44 182.2 159 57.9
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 8.7e-44 181.8 239 41.0
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 1.0e-39 168.3 141 57.4
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.2e-37 161.4 130 58.5
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 2.1e-37 160.6 130 57.7
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 5.7e-35 152.5 179 48.6
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 7.4e-35 152.1 108 74.1
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 3.1e-33 146.7 276 31.2
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.0e-33 145.2 138 52.9
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 2.2e-26 124.0 217 41.5
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.4e-25 121.3 90 58.9
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.4e-25 120.6 90 58.9
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.4e-24 116.7 90 56.7
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 7.7e-24 115.5 111 55.9
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.5e-22 109.4 90 55.6
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.0e-20 105.1 95 52.6
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 4.8e-18 96.3 271 26.2
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.0e-15 88.6 91 57.1
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.1e-14 85.1 67 56.7
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.8e-12 77.8 45 84.4
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.0e-12 77.0 70 60.0
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.0e-12 77.0 70 60.0
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 7.4e-11 72.4 79 50.6
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.3e-10 71.6 58 60.3
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.4e-09 67.4 65 52.3
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 7.0e-09 65.9 73 49.3
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 3.2e-06 57.0 106 39.6


User provided reference genes

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