Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 3.1e-162 575.1 295 100.0
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 2.0e-100 369.8 297 68.4
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 1.1e-98 364.0 297 66.0
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 1.4e-98 363.6 296 66.9
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 1.6e-97 360.1 329 61.1
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 2.1e-94 349.7 297 63.3
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 6.2e-94 348.2 299 65.2
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 6.2e-94 348.2 296 65.9
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 1.2e-92 344.0 300 65.0
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 4.4e-92 342.0 300 64.3
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 5.8e-92 341.7 334 59.3
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 2.2e-91 339.7 297 62.0
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 2.4e-90 336.3 297 61.6
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 5.4e-90 335.1 293 64.8
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 6.6e-88 328.2 307 59.6
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 9.9e-76 287.7 301 56.8
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 5.1e-72 275.4 308 52.6
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 4.8e-70 268.9 323 48.9
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 4.2e-66 255.8 308 48.1
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 7.1e-66 255.0 313 48.9
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.1e-65 253.4 312 48.7
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 4.6e-65 252.3 306 48.4
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.3e-64 250.8 328 46.3
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 1.8e-64 250.4 316 48.7
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 1.1e-63 247.7 299 46.2
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 1.1e-63 247.7 224 61.6
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 2.5e-63 246.5 294 49.0
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 4.3e-63 245.7 307 48.5
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 4.3e-63 245.7 307 48.5
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 9.6e-63 244.6 316 50.0
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 2.1e-62 243.4 310 48.1
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.1e-62 243.4 307 48.2
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 2.8e-62 243.0 303 48.8
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 6.2e-62 241.9 317 44.5
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 8.1e-62 241.5 308 47.1
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 6.9e-61 238.4 315 45.7
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 5.8e-60 235.3 313 46.6
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 5.8e-60 235.3 308 46.8
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 7.6e-60 235.0 293 48.5
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 8.4e-59 231.5 309 43.4
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-58 231.1 296 48.0
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 2.5e-58 229.9 311 45.0
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 7.1e-58 228.4 299 44.5
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.6e-57 227.3 317 42.6
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 2.7e-57 226.5 311 43.4
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 4.6e-57 225.7 285 48.1
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.0e-56 224.6 312 45.2
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 2.3e-56 223.4 319 44.5
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 3.9e-56 222.6 274 48.5
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 5.1e-56 222.2 316 41.8
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 5.1e-56 222.2 316 41.8
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 1.5e-55 220.7 302 46.0
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.3e-54 217.6 293 44.7
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.2e-52 211.1 321 40.8
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 3.4e-52 209.5 299 44.1
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.8e-52 208.8 309 45.0
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 5.8e-52 208.8 297 44.4
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 7.6e-52 208.4 303 43.6
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 1.0e-51 208.0 292 43.2
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.3e-51 207.6 298 40.6
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 3.8e-51 206.1 294 43.5
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 3.8e-51 206.1 314 41.7
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 3.8e-51 206.1 304 43.1
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 4.9e-51 205.7 306 42.5
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 8.4e-51 204.9 297 43.8
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 1.1e-50 204.5 295 40.3
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.4e-50 204.1 323 39.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.9e-50 203.8 316 39.9
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 2.5e-50 203.4 304 42.1
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.2e-50 202.6 293 44.0
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 7.1e-50 201.8 311 43.1
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 7.1e-50 201.8 300 42.0
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.2e-49 201.1 306 43.5
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 4.6e-49 199.1 292 42.5
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 7.9e-49 198.4 304 41.8
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 1.8e-48 197.2 317 39.7
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 3.9e-48 196.1 320 40.6
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 8.7e-48 194.9 301 40.9
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 3.3e-47 193.0 308 40.6
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 9.7e-47 191.4 281 41.6
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 9.7e-47 191.4 336 41.1
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.6e-46 190.7 373 36.2
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.6e-46 190.7 307 41.0
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 1.8e-45 187.2 349 36.4
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.8e-45 187.2 320 39.7
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.1e-45 186.4 286 40.6
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 5.3e-45 185.7 310 39.0
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 9.0e-45 184.9 293 39.9
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 9.0e-45 184.9 293 39.9
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.0e-44 183.7 305 38.4
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 2.6e-44 183.3 301 41.9
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 3.8e-43 179.5 314 41.1
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 8.5e-43 178.3 292 38.7
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 8.5e-43 178.3 306 39.2
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 2.5e-42 176.8 296 39.5
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 2.5e-42 176.8 293 37.2
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 2.5e-42 176.8 342 38.9
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 4.2e-42 176.0 302 38.7
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 4.2e-42 176.0 301 39.9
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 2.1e-41 173.7 295 41.0
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.3e-40 170.2 292 38.0
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 5.1e-40 169.1 358 34.6
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 3.3e-39 166.4 294 39.1
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 5.7e-39 165.6 315 35.9
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 7.4e-39 165.2 342 36.3
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 9.1e-37 158.3 300 37.3
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 1.2e-36 157.9 289 39.8
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 2.0e-36 157.1 295 38.0
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 1.1e-34 151.4 338 34.6
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 3.6e-33 146.4 402 31.3
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 7.4e-31 138.7 307 34.9
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 3.7e-30 136.3 297 34.0
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.2e-30 135.2 225 40.0
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 9.1e-29 131.7 287 32.8
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.9e-27 126.7 222 39.2
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 4.2e-26 122.9 222 38.7
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 1.4e-24 117.9 199 38.7
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 7.4e-23 112.1 147 46.9
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.8e-21 107.5 208 35.6
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 1.8e-21 107.5 184 38.0
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 9.1e-21 105.1 217 35.9
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.6e-20 104.4 357 26.9
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 2.9e-19 100.1 93 51.6
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 2.9e-19 100.1 256 29.3
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 6.5e-19 99.0 88 59.1
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 6.5e-19 99.0 101 49.5
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 2.5e-18 97.1 86 51.2
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 4.2e-18 96.3 70 67.1
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 4.7e-17 92.8 234 29.5
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.8e-16 90.9 223 31.8
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 1.8e-16 90.9 96 46.9
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 3.0e-16 90.1 113 45.1
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.2e-14 84.0 339 25.7
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.2e-14 84.0 55 70.9
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 6.3e-14 82.4 319 25.7
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.3e-14 82.0 56 67.9
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 5.3e-13 79.3 106 42.5
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.3e-11 74.7 223 32.7
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 1.7e-11 74.3 321 27.1
HanXRQChr02g0059211 Helianthus annuus HOM05D001447 ORTHO05D005923 8.0e-09 65.5 70 55.7
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 4.0e-08 63.2 174 32.2
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 4.0e-08 63.2 297 23.6
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 6.8e-08 62.4 81 43.2
FAN01G2287 Fragaria x ananassa HOM05D021264 ORTHO05D022594 1.2e-07 61.6 110 40.0
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.5e-07 61.2 259 27.0
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 3.4e-07 60.1 86 37.2
FAN03G0395 Fragaria x ananassa HOM05D021264 ORTHO05D022594 1.7e-06 57.8 120 36.7


User provided reference genes

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