Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 8.1e-76 287.0 142 100.0
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.0e-62 243.4 144 88.2
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 2.3e-62 242.3 143 86.7
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 3.9e-62 241.5 144 84.7
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 6.7e-62 240.7 150 83.3
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 1.5e-61 239.6 143 85.3
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 2.1e-60 235.7 142 81.7
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 2.8e-60 235.3 143 82.5
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 2.8e-60 235.3 143 83.9
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 8.2e-60 233.8 144 83.3
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.4e-59 233.0 142 83.8
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 1.5e-58 229.6 142 81.0
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.5e-58 229.6 142 79.6
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.0e-58 229.2 142 81.7
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.6e-58 228.8 143 79.7
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 3.4e-58 228.4 143 81.8
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 5.9e-58 227.6 144 80.6
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 5.9e-58 227.6 144 79.2
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 7.6e-58 227.3 142 79.6
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.0e-57 226.9 146 78.8
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 1.0e-57 226.9 143 81.8
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 1.0e-57 226.9 143 81.8
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 1.3e-57 226.5 143 78.3
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 1.3e-57 226.5 147 78.2
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.2e-57 225.7 143 80.4
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 2.2e-57 225.7 139 82.0
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 2.9e-57 225.3 146 78.8
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 3.8e-57 224.9 144 79.2
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 3.8e-57 224.9 142 78.9
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 6.5e-57 224.2 143 79.0
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 8.5e-57 223.8 143 79.7
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 1.1e-56 223.4 144 79.2
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 1.1e-56 223.4 145 78.6
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 1.4e-56 223.0 146 78.1
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 1.4e-56 223.0 144 78.5
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 3.2e-56 221.9 141 80.1
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 4.2e-56 221.5 144 78.5
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 5.5e-56 221.1 142 79.6
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 5.5e-56 221.1 143 80.4
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 7.2e-56 220.7 145 76.6
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 9.3e-56 220.3 145 77.9
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 1.2e-55 219.9 142 78.9
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 1.6e-55 219.5 144 77.8
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 2.1e-55 219.2 145 77.2
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 2.1e-55 219.2 142 78.2
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 2.7e-55 218.8 142 78.2
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 2.7e-55 218.8 142 77.5
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.7e-55 218.8 143 78.3
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 2.7e-55 218.8 144 80.6
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 2.7e-55 218.8 144 77.8
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 3.6e-55 218.4 140 78.6
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 3.6e-55 218.4 148 77.0
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 4.6e-55 218.0 144 78.5
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 6.1e-55 217.6 145 76.6
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 6.1e-55 217.6 142 76.8
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 6.1e-55 217.6 144 77.1
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 1.0e-54 216.9 148 78.4
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.8e-54 216.1 145 75.9
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 3.9e-54 214.9 144 76.4
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 3.9e-54 214.9 144 76.4
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 3.9e-54 214.9 146 72.6
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 5.1e-54 214.5 146 74.7
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 6.7e-54 214.2 142 76.8
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 6.7e-54 214.2 144 75.0
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 8.7e-54 213.8 144 75.0
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.1e-53 213.4 140 78.6
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 1.5e-53 213.0 148 75.0
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 1.5e-53 213.0 148 75.0
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 1.5e-53 213.0 148 75.0
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.5e-53 213.0 142 76.1
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.5e-53 213.0 142 76.1
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 1.9e-53 212.6 145 74.5
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.9e-53 212.6 143 75.5
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 2.5e-53 212.2 144 75.0
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 4.3e-53 211.5 144 78.5
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 5.7e-53 211.1 133 79.7
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 5.7e-53 211.1 170 67.6
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 5.7e-53 211.1 145 75.2
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 5.7e-53 211.1 144 75.0
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 5.7e-53 211.1 144 75.0
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 5.7e-53 211.1 143 75.5
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.3e-52 209.9 131 77.9
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 1.6e-52 209.5 145 75.9
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 1.6e-52 209.5 143 78.3
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.2e-52 209.1 148 74.3
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 2.8e-52 208.8 147 72.8
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 2.8e-52 208.8 148 76.4
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 3.7e-52 208.4 152 71.7
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 3.7e-52 208.4 145 73.8
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 3.7e-52 208.4 143 75.5
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 6.3e-52 207.6 144 72.9
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 1.4e-51 206.5 146 72.6
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.4e-51 206.5 142 74.6
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 1.4e-51 206.5 142 75.4
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 1.4e-51 206.5 142 75.4
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 2.4e-51 205.7 147 72.8
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 2.4e-51 205.7 145 75.2
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 2.4e-51 205.7 131 80.2
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 3.1e-51 205.3 143 73.4
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 1.2e-50 203.4 142 73.9
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 1.2e-50 203.4 111 88.3
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.6e-50 202.2 146 71.2
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 3.4e-50 201.8 143 73.4
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 3.4e-50 201.8 165 66.1
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.4e-50 201.8 142 73.2
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 3.4e-50 201.8 142 72.5
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 5.9e-50 201.1 145 71.7
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 7.7e-50 200.7 133 75.9
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.3e-49 199.9 146 71.2
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 3.8e-49 198.4 220 54.5
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.8e-49 198.4 139 74.1
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.0e-49 198.0 116 83.6
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 8.5e-49 197.2 147 72.1
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 8.5e-49 197.2 147 72.1
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 3.2e-48 195.3 147 71.4
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 9.4e-48 193.7 107 86.0
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 4.6e-47 191.4 116 83.6
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 6.1e-47 191.0 141 70.9
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 2.3e-46 189.1 114 80.7
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.0e-45 186.0 116 79.3
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 3.7e-44 181.8 173 59.0
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.4e-43 179.1 204 52.5
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 7.7e-42 174.1 92 92.4
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 1.3e-41 173.3 106 82.1
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 3.8e-41 171.8 108 79.6
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 2.5e-40 169.1 91 91.2
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 7.2e-40 167.5 90 90.0
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 2.7e-39 165.6 88 90.9
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 2.6e-34 149.1 109 70.6
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.5e-32 142.5 118 58.5
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 3.2e-32 142.1 98 73.5
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 2.7e-31 139.0 108 63.9
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.3e-29 132.1 144 55.6
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 1.7e-28 129.8 108 63.0
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 7.0e-27 124.4 108 59.3
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 1.0e-25 120.6 63 95.2
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.8e-22 109.8 60 90.0
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 6.8e-22 107.8 87 57.5
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 9.8e-21 104.0 89 61.8
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 2.8e-20 102.4 73 65.8
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.6e-15 86.7 113 46.9
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 6.1e-15 84.7 87 47.1
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 5.2e-14 81.6 134 41.8
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 9.8e-13 77.4 63 60.3
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 1.2e-10 70.5 48 72.9
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 1.3e-09 67.0 35 91.4
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.1e-08 63.9 59 55.9
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 5.6e-08 61.6 72 44.4
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 3.6e-07 58.9 43 69.8
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 3.6e-07 58.9 43 69.8
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 4.7e-07 58.5 65 49.2
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 8.0e-07 57.8 98 40.8
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 6.8e-06 54.7 29 82.8
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 8.9e-06 54.3 54 48.1


User provided reference genes

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