Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 2.9e-57 224.9 107 100.0
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 8.1e-28 127.1 100 61.0
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 3.1e-27 125.2 85 69.4
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 1.2e-26 123.2 85 74.1
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.4e-24 116.3 81 72.8
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.2e-23 113.2 95 62.1
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 6.0e-23 110.9 85 62.4
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 3.9e-22 108.2 85 63.5
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 3.9e-22 108.2 88 62.5
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 3.9e-22 108.2 84 61.9
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 5.1e-22 107.8 94 58.5
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 1.1e-21 106.7 99 56.6
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 1.1e-21 106.7 85 58.8
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 1.5e-21 106.3 85 58.8
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 7.4e-21 104.0 97 57.7
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 1.6e-20 102.8 84 57.1
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 8.1e-20 100.5 84 58.3
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 1.1e-19 100.1 83 57.8
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 4.0e-19 98.2 83 60.2
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 5.3e-19 97.8 79 60.8
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.2e-18 96.7 86 59.3
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 9.9e-18 93.6 84 52.4
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 4.9e-17 91.3 109 45.9
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.4e-16 89.7 85 56.5
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 1.9e-16 89.4 85 56.5
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 9.3e-16 87.0 83 51.8
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.6e-15 86.3 85 51.8
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 2.7e-15 85.5 80 53.8
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 4.6e-15 84.7 75 53.3
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 1.3e-14 83.2 76 56.6
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.3e-14 82.4 76 56.6
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 5.1e-14 81.3 81 54.3
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 1.9e-13 79.3 95 48.4
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 1.9e-13 79.3 75 49.3
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 2.5e-13 79.0 83 48.2
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 2.5e-13 79.0 81 50.6
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.3e-13 78.2 79 53.2
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 5.6e-13 77.8 79 54.4
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 9.6e-13 77.0 124 37.1
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 1.6e-12 76.3 87 50.6
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 2.1e-12 75.9 104 40.4
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 2.1e-12 75.9 90 43.3
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.8e-12 75.5 79 50.6
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 6.2e-12 74.3 83 47.0
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 8.2e-12 73.9 88 46.6
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 8.2e-12 73.9 75 49.3
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 1.4e-11 73.2 72 48.6
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.1e-11 72.0 98 41.8
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 3.1e-11 72.0 78 39.7
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 6.9e-11 70.9 92 42.4
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 9.0e-11 70.5 96 34.4
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 2.0e-10 69.3 80 45.0
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 3.4e-10 68.6 92 40.2
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 4.5e-10 68.2 102 39.2
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 5.8e-10 67.8 68 41.2
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 7.6e-10 67.4 55 58.2
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.6e-10 67.4 85 38.8
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 1.3e-09 66.6 75 46.7
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 1.7e-09 66.2 76 43.4
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 2.2e-09 65.9 95 36.8
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.2e-09 65.9 84 41.7
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 2.2e-09 65.9 83 38.6
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 2.2e-09 65.9 53 50.9
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 2.2e-09 65.9 76 44.7
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.9e-09 65.5 83 38.6
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 3.8e-09 65.1 80 42.5
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 3.8e-09 65.1 70 45.7
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 4.9e-09 64.7 90 43.3
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 8.4e-09 63.9 100 38.0
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 8.4e-09 63.9 94 37.2
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.1e-08 63.5 83 37.3
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 1.4e-08 63.2 70 44.3
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.9e-08 62.8 89 37.1
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 1.9e-08 62.8 72 36.1
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 2.5e-08 62.4 86 34.9
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 3.2e-08 62.0 76 40.8
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.2e-08 61.6 104 34.6
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 4.2e-08 61.6 83 42.2
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 7.1e-08 60.8 79 34.2
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 7.1e-08 60.8 87 40.2
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.1e-08 60.8 84 39.3
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 9.3e-08 60.5 96 34.4
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 9.3e-08 60.5 74 39.2
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 1.6e-07 59.7 75 37.3
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.6e-07 59.7 77 40.3
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 1.6e-07 59.7 101 35.6
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 3.5e-07 58.5 106 34.9
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 3.5e-07 58.5 79 39.2
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 3.5e-07 58.5 95 40.0
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 6.0e-07 57.8 47 59.6
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 6.0e-07 57.8 94 37.2
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 7.9e-07 57.4 96 35.4
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 7.9e-07 57.4 77 35.1
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 7.9e-07 57.4 85 35.3
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.0e-06 57.0 87 34.5
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 1.0e-06 57.0 93 39.8
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 1.8e-06 56.2 47 59.6
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.8e-06 56.2 73 41.1
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.8e-06 56.2 73 41.1
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 2.3e-06 55.8 81 38.3
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 2.3e-06 55.8 81 38.3
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 2.3e-06 55.8 87 35.6
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 2.3e-06 55.8 107 32.7
Nitab4.5_0011008g0030 Nicotiana tabacum HOM05D007227 ORTHO05D002252 3.9e-06 55.1 57 49.1
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 5.1e-06 54.7 96 35.4
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 5.1e-06 54.7 89 33.7
Hma1.2p1_0066F.1_g036590 Hydrangea macrophylla HOM05D007227 ORTHO05D002252 5.1e-06 54.7 73 43.8
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 6.7e-06 54.3 85 34.1
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 8.7e-06 53.9 87 33.3


User provided reference genes

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