Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00081g0009495 Lotus japonicus HOM05D006926 ORTHO05D008863 2.2e-102 377.9 195 100.0
Psat2g008440 Pisum sativum HOM05D006926 ORTHO05D008863 4.3e-69 267.3 194 71.6
Medtr5g095130 Medicago truncatula HOM05D006926 ORTHO05D008863 3.8e-65 254.2 196 68.4
VMungo0647G0525 Vigna mungo HOM05D006926 ORTHO05D008863 6.4e-65 253.4 195 68.7
Phvul.008G277600 Phaseolus vulgaris HOM05D006926 ORTHO05D008863 2.3e-62 245.0 186 68.8
TPR.G14145 Trifolium pratense HOM05D006926 ORTHO05D008863 6.6e-62 243.4 196 66.8
TPR.G14143 Trifolium pratense HOM05D006926 ORTHO05D008863 5.6e-61 240.4 191 66.5
arahy.Tifrunner.gnm1.ann1.R7Y0VJ Arachis hypogaea HOM05D006926 ORTHO05D008863 1.7e-57 228.8 193 63.7
arahy.Tifrunner.gnm1.ann1.DI2NU4 Arachis hypogaea HOM05D006926 ORTHO05D008863 1.2e-55 222.6 195 61.5
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 2.1e-55 221.9 144 75.0
Lalb_Chr17g0348851 Lupinus albus HOM05D006926 ORTHO05D008863 6.0e-55 220.3 193 60.1
Lalb_Chr10g0107371 Lupinus albus HOM05D006926 ORTHO05D008863 5.1e-54 217.2 190 61.1
Ca_06384_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 3.3e-53 214.5 136 76.5
Ca_29965_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 3.3e-53 214.5 136 76.5
Manes.03G195800 Manihot esculenta HOM05D006926 ORTHO05D008863 5.1e-46 190.7 171 53.8
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 8.7e-46 189.9 172 52.3
Duzib151G0724 Durio zibethinus HOM05D006926 ORTHO05D008863 7.4e-45 186.8 160 59.4
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 9.6e-45 186.4 149 58.4
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 9.6e-45 186.4 141 61.7
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 1.4e-43 182.6 159 57.9
Rhsim04G0222900 Rhododendron simsii HOM05D006926 ORTHO05D008863 4.0e-43 181.0 126 65.9
Cpa.g.sc16.177 Carica papaya HOM05D006926 ORTHO05D008863 5.3e-43 180.6 194 49.5
COL.COLO4_13863 Corchorus olitorius HOM05D006926 ORTHO05D008863 5.3e-43 180.6 151 58.9
FvH4_4g18230 Fragaria vesca HOM05D006926 ORTHO05D008863 9.0e-43 179.9 132 61.4
FAN12G2558 Fragaria x ananassa HOM05D006926 ORTHO05D008863 9.0e-43 179.9 132 61.4
FAN12G4333 Fragaria x ananassa HOM05D006926 ORTHO05D008863 9.0e-43 179.9 132 61.4
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 1.2e-42 179.5 143 58.7
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 1.5e-42 179.1 147 57.8
Potri.010G014100 Populus trichocarpa HOM05D006926 ORTHO05D008863 1.5e-42 179.1 130 63.8
TWI09G0560 Tripterygium wilfordii HOM05D006926 ORTHO05D008863 2.0e-42 178.7 147 58.5
Sabra10G0009000 Salix brachista HOM05D006926 ORTHO05D008863 2.6e-42 178.3 130 63.8
Prupe.1G135500 Prunus persica HOM05D006926 ORTHO05D008863 3.4e-42 177.9 150 57.3
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 3.4e-42 177.9 152 59.2
PGR031G3585 Punica granatum HOM05D006926 ORTHO05D008863 5.8e-42 177.2 143 55.2
vmacro08158 Vaccinium macrocarpon HOM05D006926 ORTHO05D008863 5.8e-42 177.2 124 64.5
FAN17G0573 Fragaria x ananassa HOM05D006926 ORTHO05D008863 7.6e-42 176.8 130 61.5
Nitab4.5_0005852g0010 Nicotiana tabacum HOM05D006926 ORTHO05D008863 9.9e-42 176.4 130 63.1
CAN.G185.37 Capsicum annuum HOM05D006926 ORTHO05D008863 2.2e-41 175.3 128 65.6
Gohir.D09G239500 Gossypium hirsutum HOM05D006926 ORTHO05D008863 3.8e-41 174.5 126 61.1
Gorai.006G262300 Gossypium raimondii HOM05D006926 ORTHO05D008863 3.8e-41 174.5 126 61.1
CsaV3_3G014680 Cucumis sativus L. HOM05D006926 ORTHO05D008863 8.4e-41 173.3 128 61.7
Lj9C380T3 Lonicera japonica HOM05D006926 ORTHO05D008863 8.4e-41 173.3 132 61.4
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 1.1e-40 172.9 163 52.8
Nitab4.5_0000059g0440 Nicotiana tabacum HOM05D006926 ORTHO05D008863 1.1e-40 172.9 130 62.3
Gohir.A09G238600 Gossypium hirsutum HOM05D006926 ORTHO05D008863 1.4e-40 172.6 126 60.3
AT3G06920 Arabidopsis thaliana HOM05D006926 ORTHO05D008863 1.9e-40 172.2 126 64.3
RcHm_v2.0_Chr4g0422371 Rosa chinensis HOM05D006926 ORTHO05D008863 1.9e-40 172.2 168 52.4
AL3G18040 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 3.2e-40 171.4 126 65.1
AL3G18070 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 3.2e-40 171.4 126 65.1
AL3G18090 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 3.2e-40 171.4 126 65.1
ClCG05G006130 Citrullus lanatus HOM05D006926 ORTHO05D008863 3.2e-40 171.4 132 60.6
Aa31LG5G17490 Aethionema arabicum HOM05D006926 ORTHO05D008863 5.5e-40 170.6 132 59.1
Solyc01g080720.4 Solanum lycopersicum HOM05D006926 ORTHO05D008863 9.3e-40 169.9 150 58.0
CARHR081530 Cardamine hirsuta HOM05D006926 ORTHO05D008863 1.2e-39 169.5 126 64.3
Sopen01g030780 Solanum pennellii HOM05D006926 ORTHO05D008863 1.2e-39 169.5 150 58.0
Atru.chr4.2848 Acer truncatum HOM05D006926 ORTHO05D008863 2.7e-39 168.3 123 61.8
PGSC0003DMG400006295 Solanum tuberosum HOM05D006926 ORTHO05D008863 2.7e-39 168.3 150 58.0
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 3.5e-39 167.9 161 50.3
AL159U10010 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 7.9e-39 166.8 126 64.3
Peaxi162Scf01123g00213 Petunia axillaris HOM05D006926 ORTHO05D008863 1.0e-38 166.4 128 60.2
Sp3g05870 Schrenkiella parvula HOM05D006926 ORTHO05D008863 1.3e-38 166.0 152 54.6
TAR365G0466 Trochodendron aralioides HOM05D006926 ORTHO05D008863 1.3e-38 166.0 132 59.8
Oeu029705.1 Olea europaea HOM05D006926 ORTHO05D008863 1.8e-38 165.6 123 58.5
CSS0048032 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 3.0e-38 164.9 127 59.8
Cc01_g06580 Coffea canephora HOM05D006926 ORTHO05D008863 3.0e-38 164.9 126 57.1
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 5.1e-38 164.1 173 48.0
HanXRQChr05g0150001 Helianthus annuus HOM05D006926 ORTHO05D008863 8.7e-38 163.3 132 53.0
Thhalv10020026m.g Eutrema salsugineum HOM05D006926 ORTHO05D008863 1.5e-37 162.5 152 53.3
Cc00_g07570 Coffea canephora HOM05D006926 ORTHO05D008863 1.9e-37 162.2 126 57.1
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 3.3e-37 161.4 192 47.4
BraA03t12676Z Brassica rapa HOM05D006926 ORTHO05D008863 5.6e-37 160.6 143 53.8
C03p42540 Brassica napus HOM05D006926 ORTHO05D008863 9.6e-37 159.8 144 52.8
BolC3t16524H Brassica oleracea HOM05D006926 ORTHO05D008863 1.6e-36 159.1 127 56.7
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 3.7e-36 157.9 116 62.1
A03p34960 Brassica napus HOM05D006926 ORTHO05D008863 6.2e-36 157.1 143 52.4
DCAR_006643 Daucus carota HOM05D006926 ORTHO05D008863 6.2e-36 157.1 127 55.9
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 1.4e-35 156.0 123 58.5
THA.LOC104827343 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 3.1e-35 154.8 187 46.0
AUR62035127 Chenopodium quinoa HOM05D006926 ORTHO05D008863 9.0e-35 153.3 122 54.1
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 9.0e-35 153.3 130 53.1
AUR62040613 Chenopodium quinoa HOM05D006926 ORTHO05D008863 1.2e-34 152.9 131 51.9
SHI00269 Sapria himalayana HOM05D006926 ORTHO05D008863 3.4e-34 151.4 131 55.0
Sc10g0006430 Simmondsia chinensis HOM05D006926 ORTHO05D008863 1.7e-33 149.1 120 55.8
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 2.2e-33 148.7 118 58.5
ATR0796G196 Amborella trichopoda HOM05D006926 ORTHO05D008863 2.9e-33 148.3 131 53.4
Migut.G00155 Erythranthe guttata HOM05D006926 ORTHO05D008863 3.8e-33 147.9 129 51.9
EL10Ac1g01925 Beta vulgaris HOM05D006926 ORTHO05D008863 4.9e-33 147.5 153 46.4
SalBow1G7679 Salvia bowleyana HOM05D006926 ORTHO05D008863 1.1e-32 146.4 170 42.4
MSTRG.10097 Avicennia marina HOM05D006926 ORTHO05D008863 5.5e-32 144.1 129 53.5
Nn6g34671 Nelumbo nucifera HOM05D006926 ORTHO05D008863 1.2e-31 142.9 128 53.9
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 2.1e-31 142.1 118 52.5
PSO302G0177 Papaver somniferum HOM05D006926 ORTHO05D008863 4.6e-31 141.0 181 43.6
Nn2g14325 Nelumbo nucifera HOM05D006926 ORTHO05D008863 6.7e-30 137.1 147 48.3
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 1.5e-29 136.0 147 45.6
SGA_v2.0_scaffold67G22630 Striga asiatica HOM05D006926 ORTHO05D008863 1.6e-28 132.5 118 52.5
Eucgr.C02193 Eucalyptus grandis HOM05D006926 ORTHO05D008863 1.1e-24 119.8 108 54.6
Eucgr.B01739 Eucalyptus grandis HOM05D006926 ORTHO05D008863 3.2e-24 118.2 80 62.5
HPP92_015997 Vanilla planifolia HOM05D006926 ORTHO05D008863 1.0e-22 113.2 117 45.3
CDE11G0294 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 5.7e-21 107.5 121 42.1
CDE01G0787 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 3.0e-14 85.1 133 32.3
GSVIVG01017733001 Vitis vinifera HOM05D006926 ORTHO05D008863 2.6e-13 82.0 47 83.0
Ciclev10007037m.g Citrus clementina HOM05D006926 ORTHO05D008863 5.7e-13 80.9 47 83.0
TAR365G0845 Trochodendron aralioides HOM05D006926 ORTHO05D008863 7.4e-13 80.5 47 80.9
Dinv26449 Davidia involucrata HOM05D006926 ORTHO05D008863 4.8e-12 77.8 48 81.2
HanXRQChr09g0263281 Helianthus annuus HOM05D002460 ORTHO05D002716 2.4e-11 75.5 124 31.5
Carub.0003s0644 Capsella rubella HOM05D006926 ORTHO05D008863 1.5e-10 72.8 47 72.3
Os07g0249100 Oryza sativa ssp. japonica HOM05D006926 ORTHO05D008863 2.6e-10 72.0 44 77.3
Zm00001eb304410 Zea mays HOM05D006926 ORTHO05D008863 7.7e-10 70.5 46 71.7
Lsat_1_v5_gn_8_31281 Lactuca sativa HOM05D006926 ORTHO05D008863 8.5e-09 67.0 46 65.2
CAN.G497.28 Capsicum annuum HOM05D002460 ORTHO05D002716 1.4e-08 66.2 129 26.4
ECA232G4177 Erigeron canadensis HOM05D002460 ORTHO05D002716 1.9e-08 65.9 119 34.5
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 9.4e-08 63.5 135 29.6
Migut.H00563 Erythranthe guttata HOM05D002460 ORTHO05D002716 1.2e-07 63.2 146 26.7
CARHR076470 Cardamine hirsuta HOM05D002460 ORTHO05D002716 2.1e-07 62.4 131 23.7
Pp3c2_27580 Physcomitrium patens HOM05D006926 ORTHO05D002107 2.1e-07 62.4 132 30.3
Carub.0006s1417 Capsella rubella HOM05D002460 ORTHO05D002716 2.7e-07 62.0 123 26.0
Mapoly0031s0063 Marchantia polymorpha HOM05D004079 ORTHO05D005437 2.7e-07 62.0 144 27.1
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 3.6e-07 61.6 140 29.3
BcaB08g36875 Brassica carinata HOM05D002460 ORTHO05D002716 4.7e-07 61.2 125 27.2
Aa31LG11G13630 Aethionema arabicum HOM05D002460 ORTHO05D002716 6.1e-07 60.8 140 26.4
VMungo1215G0531 Vigna mungo HOM05D002460 ORTHO05D002716 6.1e-07 60.8 134 26.1
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 8.0e-07 60.5 141 22.7
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.0e-06 60.1 129 27.9
AT3G02490 Arabidopsis thaliana HOM05D002460 ORTHO05D002716 1.0e-06 60.1 131 23.7
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 1.0e-06 60.1 124 29.8
Sed0021384 Sechium edule HOM05D006926 ORTHO05D008863 1.0e-06 60.1 44 65.9
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 1.0e-06 60.1 105 27.6
Sp6g28140 Schrenkiella parvula HOM05D002460 ORTHO05D002716 1.4e-06 59.7 115 26.1
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.4e-06 59.7 121 31.4
AL3G11810 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 1.8e-06 59.3 131 23.7
Cc04_g11450 Coffea canephora HOM05D002460 ORTHO05D002716 1.8e-06 59.3 108 30.6
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 1.8e-06 59.3 129 28.7
Carub.0003s0159 Capsella rubella HOM05D002460 ORTHO05D002716 3.0e-06 58.5 131 23.7
CARHR197330 Cardamine hirsuta HOM05D002460 ORTHO05D002716 3.0e-06 58.5 123 26.0
Thhalv10012887m.g Eutrema salsugineum HOM05D002460 ORTHO05D002716 3.0e-06 58.5 125 25.6
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.0e-06 58.5 121 30.6
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 3.9e-06 58.2 105 29.5
AT5G15980 Arabidopsis thaliana HOM05D002460 ORTHO05D002716 3.9e-06 58.2 123 25.2
C09p61090 Brassica napus HOM05D002460 ORTHO05D002716 3.9e-06 58.2 130 25.4
Carub.0005s1442 Capsella rubella HOM05D002460 ORTHO05D002716 3.9e-06 58.2 145 26.9
Thhalv10012992m.g Eutrema salsugineum HOM05D002460 ORTHO05D002716 3.9e-06 58.2 142 28.9
MBI07_g28242_MAGBIO Magnolia biondii HOM05D002460 ORTHO05D002716 3.9e-06 58.2 124 25.0
Phvul.003G205400 Phaseolus vulgaris HOM05D002460 ORTHO05D002716 3.9e-06 58.2 131 21.4
BolC9t58952H Brassica oleracea HOM05D002460 ORTHO05D002716 5.2e-06 57.8 130 24.6
Actinidia33408 Actinidia chinensis HOM05D000424 ORTHO05D000355 6.7e-06 57.4 115 26.1
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 6.7e-06 57.4 116 29.3
Sp3g01530 Schrenkiella parvula HOM05D002460 ORTHO05D002716 6.7e-06 57.4 131 22.1
SEGI_24878 Sequoiadendron giganteum HOM05D006926 ORTHO05D008863 6.7e-06 57.4 72 36.1
VMungo1215G2415 Vigna mungo HOM05D002460 ORTHO05D002716 6.7e-06 57.4 145 24.8
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 8.8e-06 57.0 100 32.0
COL.COLO4_19419 Corchorus olitorius HOM05D006464 ORTHO05D007923 8.8e-06 57.0 146 26.7
PSO782G0394 Papaver somniferum HOM05D004079 ORTHO05D005437 8.8e-06 57.0 110 26.4


User provided reference genes

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