Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 5.5e-204 714.1 378 100.0
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 7.0e-151 537.7 377 79.0
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 2.3e-149 532.7 321 88.2
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 7.3e-148 527.7 376 78.5
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 9.5e-148 527.3 370 79.5
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 4.7e-147 525.0 327 84.7
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 3.4e-145 518.8 383 76.2
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 9.8e-145 517.3 340 82.1
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.7e-144 516.5 352 82.1
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.9e-143 513.1 348 82.2
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 7.8e-142 507.7 352 78.4
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.1e-140 503.8 348 77.6
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.9e-140 503.1 345 78.6
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.9e-140 503.1 348 77.3
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.9e-140 503.1 324 80.9
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 2.5e-140 502.7 346 78.3
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 5.6e-140 501.5 348 78.2
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 7.3e-140 501.1 373 75.6
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.2e-139 500.4 362 77.6
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.2e-139 500.4 348 77.9
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.2e-139 500.4 367 76.0
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 2.1e-139 499.6 366 74.9
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 2.8e-139 499.2 342 80.4
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 3.6e-139 498.8 343 80.5
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 3.6e-139 498.8 343 78.4
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 5.2e-138 495.0 326 80.4
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.5e-137 493.4 382 72.0
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 2.0e-137 493.0 342 78.4
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 2.6e-137 492.7 342 79.2
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.6e-137 492.7 342 78.9
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 4.4e-137 491.9 337 78.3
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 9.9e-137 490.7 352 77.0
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.7e-136 490.0 364 73.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 2.2e-136 489.6 348 76.1
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.1e-135 487.3 348 77.6
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.9e-135 486.5 352 77.6
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.4e-135 486.1 351 76.6
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.2e-135 485.7 341 78.0
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 4.1e-135 485.3 349 75.9
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 9.2e-135 484.2 347 76.7
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.6e-134 483.4 370 72.4
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.1e-134 483.0 362 75.7
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 3.5e-134 482.3 370 72.2
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 3.5e-134 482.3 370 72.2
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 7.8e-134 481.1 347 77.5
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.3e-133 480.3 342 77.8
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 5.1e-133 478.4 349 75.9
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 6.6e-133 478.0 342 77.8
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 8.6e-133 477.6 342 78.1
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.5e-132 476.9 362 74.3
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.9e-132 476.5 349 75.1
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.9e-132 476.5 372 71.8
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 3.3e-132 475.7 345 74.8
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.2e-131 473.8 330 77.0
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 2.1e-131 473.0 365 71.2
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 6.2e-131 471.5 341 76.5
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 6.2e-131 471.5 351 75.8
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.8e-130 469.9 363 73.3
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 3.1e-130 469.2 340 75.9
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 5.2e-130 468.4 337 75.1
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 6.9e-130 468.0 351 72.6
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 8.9e-130 467.6 364 71.2
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.5e-129 466.8 347 72.0
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 1.5e-129 466.8 362 72.1
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 7.6e-129 464.5 373 70.0
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.2e-128 463.0 323 77.4
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.9e-128 462.6 323 78.3
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 2.9e-128 462.6 364 70.1
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 3.8e-128 462.2 339 75.2
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 8.4e-128 461.1 333 75.7
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 8.4e-128 461.1 364 70.6
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 2.4e-127 459.5 351 72.6
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.2e-127 459.1 323 77.1
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 3.2e-127 459.1 333 75.7
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 3.2e-127 459.1 333 75.7
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 5.4e-127 458.4 323 77.4
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 5.4e-127 458.4 323 77.7
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 5.4e-127 458.4 333 75.4
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 5.4e-127 458.4 323 77.1
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 9.3e-127 457.6 323 77.1
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 9.3e-127 457.6 323 77.1
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 9.3e-127 457.6 323 77.1
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 9.3e-127 457.6 333 75.1
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-126 456.8 333 75.1
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-126 456.8 333 75.4
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 1.6e-126 456.8 333 75.1
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 1.6e-126 456.8 323 77.1
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 2.1e-126 456.4 351 72.6
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 2.7e-126 456.1 343 67.9
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 4.6e-126 455.3 351 72.4
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.7e-125 453.4 351 71.8
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.7e-125 453.4 347 72.0
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 2.3e-125 453.0 351 72.4
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.3e-125 453.0 351 71.8
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 5.1e-125 451.8 347 71.2
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 6.6e-125 451.4 375 70.1
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.3e-123 447.2 362 69.6
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.6e-123 446.8 368 69.3
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 2.1e-123 446.4 362 70.2
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 8.1e-123 444.5 367 68.9
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.1e-122 444.1 340 72.9
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.8e-122 443.4 361 67.6
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.4e-122 443.0 379 65.2
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.0e-122 442.2 340 72.1
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.2e-121 440.7 330 73.9
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.6e-121 439.5 327 75.2
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.5e-121 438.7 370 66.8
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 5.8e-121 438.3 324 74.4
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 1.7e-120 436.8 345 71.3
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 7.9e-118 427.9 299 76.9
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 5.1e-117 425.2 299 76.3
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 6.7e-117 424.9 299 76.3
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 8.1e-115 417.9 351 67.8
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 4.0e-114 415.6 327 67.9
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 6.7e-109 398.3 350 63.7
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.6e-107 393.7 340 62.1
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.0e-104 384.4 358 64.2
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 7.1e-103 378.3 314 70.1
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 3.3e-100 369.4 338 60.4
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 3.7e-99 365.9 353 62.9
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 6.9e-98 361.7 262 76.0
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 9.0e-98 361.3 326 63.2
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.2e-97 360.9 345 58.6
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 9.7e-92 341.3 326 59.8
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.2e-91 340.1 248 76.2
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 6.3e-91 338.6 243 77.0
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.1e-90 335.9 244 76.2
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.5e-88 328.2 297 58.2
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 2.5e-87 326.6 202 79.2
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.7e-86 323.2 338 55.0
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 8.8e-85 318.2 314 58.6
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 9.7e-84 314.7 360 53.9
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.6e-78 297.4 335 54.9
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.7e-78 295.8 322 54.3
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 8.0e-70 268.5 236 61.9
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.2e-60 238.0 209 64.6
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 6.3e-51 205.7 208 54.3
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 1.9e-47 194.1 127 79.5
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.4e-44 183.3 164 57.9
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.3e-40 171.4 119 75.6
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.9e-39 167.5 164 59.1
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 5.6e-39 166.0 100 79.0
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 8.9e-37 158.7 143 59.4
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.2e-33 148.3 90 81.1
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 6.2e-30 136.0 93 73.1
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 4.1e-26 123.2 128 54.7
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 2.1e-25 120.9 283 33.6
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-25 120.6 78 76.9
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.6e-22 111.3 95 61.1
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.6e-22 111.3 112 54.5
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 2.4e-21 107.5 122 52.5
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.9e-19 100.5 130 46.2
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 1.9e-18 97.8 92 56.5
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 4.6e-17 93.2 66 71.2
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.1e-13 82.0 272 32.4
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 1.5e-12 78.2 139 41.7
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.2e-11 74.3 178 35.4
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 4.2e-10 70.1 56 60.7
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 75 50.7
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 75 50.7
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.1e-09 67.8 62 61.3
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.5e-09 67.0 44 72.7
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.8e-09 65.9 44 68.2
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.8e-09 65.9 43 72.1
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 3.0e-08 63.9 43 72.1
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 8.7e-08 62.4 49 59.2
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.5e-07 61.6 44 68.2
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.3e-07 60.5 46 63.0
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.3e-07 60.1 44 63.6
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.2e-06 56.2 41 65.9


User provided reference genes

Program Settings