Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 0.0e+00 1251.1 656 100.0
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 7.3e-305 1050.0 656 83.5
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 4.2e-300 1034.2 656 82.9
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 7.1e-300 1033.5 656 82.8
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.3e-298 1028.5 654 82.0
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.6e-291 1005.7 656 80.2
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 4.6e-291 1004.2 656 79.9
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 2.5e-289 998.4 656 79.9
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 8.1e-288 993.4 656 79.4
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.5e-281 972.6 655 77.9
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 9.6e-281 969.9 686 75.1
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 1.2e-278 963.0 656 77.3
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 7.1e-276 953.7 650 77.4
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-271 939.1 654 76.3
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 2.4e-271 938.7 654 76.3
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.2e-267 926.4 649 75.3
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 9.1e-263 910.2 587 79.4
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 3.6e-259 898.3 649 74.0
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 7.7e-246 854.0 644 69.4
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.0e-245 853.6 636 69.2
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 5.0e-245 851.3 661 68.1
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 5.5e-244 847.8 653 67.7
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.2e-243 846.7 666 65.5
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 4.7e-243 844.7 657 68.2
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 4.7e-243 844.7 645 68.5
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.8e-242 842.8 658 67.9
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 4.0e-242 841.6 645 67.9
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 5.2e-242 841.3 654 68.2
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 5.2e-242 841.3 655 67.6
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 7.5e-241 837.4 646 66.1
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.9e-238 827.8 654 67.3
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 7.7e-238 827.4 664 65.7
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 5.0e-237 824.7 668 65.3
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 6.5e-237 824.3 647 66.5
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.5e-237 824.3 641 68.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 6.5e-237 824.3 688 65.3
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 8.5e-237 823.9 655 66.3
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 3.2e-236 822.0 654 66.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 3.2e-236 822.0 664 64.9
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 7.2e-236 820.8 623 68.9
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.4e-236 820.5 664 65.2
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 3.6e-235 818.5 688 63.7
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.4e-233 812.0 659 65.7
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 3.4e-233 812.0 661 65.7
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.5e-233 810.8 632 68.0
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.3e-232 810.1 665 65.9
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 4.8e-232 808.1 651 65.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.1e-231 807.0 650 63.7
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 9.1e-231 803.9 650 63.4
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 2.9e-229 798.9 657 63.6
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.9e-228 796.2 640 64.8
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.0e-226 790.4 658 61.7
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 6.3e-224 781.2 655 63.8
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 4.1e-223 778.5 616 66.2
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.2e-222 776.9 650 62.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 7.8e-222 774.2 649 62.1
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 9.5e-220 767.3 656 61.7
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.2e-219 766.9 640 62.8
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.2e-219 766.9 650 61.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 4.0e-218 761.9 658 60.2
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 6.8e-218 761.1 666 62.0
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 3.4e-217 758.8 640 62.2
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 9.8e-217 757.3 652 61.3
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 4.9e-216 755.0 640 61.2
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 6.4e-216 754.6 640 61.6
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.9e-215 753.1 649 59.9
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.0e-214 749.6 639 61.0
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.0e-214 749.6 640 60.8
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 2.0e-214 749.6 644 61.0
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.7e-214 749.2 652 62.6
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 7.8e-214 747.7 640 60.9
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 7.8e-214 747.7 640 60.9
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 7.8e-214 747.7 556 70.5
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 7.8e-214 747.7 646 61.0
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.7e-213 746.5 643 61.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 2.3e-213 746.1 665 59.8
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 5.6e-212 741.5 639 60.4
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 7.3e-212 741.1 627 61.7
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.2e-211 740.3 648 58.8
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 1.6e-211 740.0 665 59.5
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.1e-210 737.3 651 58.8
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 4.0e-210 735.3 627 61.2
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 8.9e-210 734.2 644 59.5
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 5.8e-209 731.5 629 60.9
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 9.8e-209 730.7 663 58.2
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.7e-208 728.8 639 61.0
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.6e-206 723.4 644 59.0
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 3.9e-205 718.8 691 55.1
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 3.3e-204 715.7 649 57.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.4e-202 710.3 542 67.3
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 3.1e-202 709.1 639 56.5
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 5.2e-202 708.4 655 56.6
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 3.5e-198 695.7 657 56.2
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 4.3e-196 688.7 534 65.4
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 6.2e-195 684.9 587 63.2
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.4e-194 682.9 644 56.8
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 3.8e-192 675.6 648 55.7
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 7.1e-191 671.4 644 56.2
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 3.1e-186 656.0 641 54.3
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 3.5e-182 642.5 575 60.2
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.6e-177 626.3 625 54.6
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.2e-175 619.4 531 59.7
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.0e-173 612.8 546 60.3
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 2.5e-172 609.8 512 61.5
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 5.6e-172 608.6 535 59.1
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 2.8e-171 606.3 645 52.9
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.4e-170 604.0 645 50.4
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.9e-168 595.5 656 51.1
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.1e-167 594.3 400 78.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.8e-165 587.0 630 50.5
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 3.9e-157 559.3 636 47.3
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 5.0e-152 542.3 402 67.7
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 4.2e-151 539.3 637 46.2
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 6.1e-142 508.8 437 60.2
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 3.3e-140 503.1 630 45.4
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.7e-139 500.7 636 44.2
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 5.3e-138 495.7 636 43.9
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.5e-135 487.6 636 44.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 4.2e-135 486.1 641 42.1
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 2.1e-126 457.2 413 63.9
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.1e-110 404.1 429 54.3
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 7.5e-92 342.4 234 75.2
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 5.4e-90 336.3 611 37.5
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.0e-84 317.8 245 64.1
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 3.7e-83 313.5 251 61.0
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 1.1e-71 275.4 253 62.1
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 2.9e-67 260.8 433 38.8
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.4e-66 258.5 382 43.5
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 5.6e-63 246.5 607 32.6
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.4e-61 241.9 211 60.2
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 9.3e-58 229.2 203 62.6
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 2.2e-51 208.0 194 60.3
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 6.7e-48 196.4 307 42.7
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 1.1e-45 189.1 292 40.4
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 5.5e-42 176.8 187 55.1
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.3e-42 176.0 133 66.2
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 3.9e-40 170.6 175 46.9
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 2.9e-35 154.5 258 37.6
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.5e-35 152.9 237 43.0
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.8e-30 137.9 604 25.3
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 1.3e-27 129.0 96 68.8
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 1.7e-27 128.6 101 61.4
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.6e-25 122.1 108 56.5
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.7e-24 116.7 119 57.1
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.7e-23 112.8 132 50.0
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.3e-22 112.5 134 50.7
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.8e-22 110.5 132 51.5
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 7.0e-21 106.7 148 46.6
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 5.9e-20 103.6 86 62.8
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.0e-19 102.8 78 67.9
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 2.1e-17 95.1 75 62.7
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 6.7e-16 90.1 70 65.7
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-15 89.4 69 66.7
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.3e-15 87.8 67 68.7
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 4.4e-15 87.4 67 62.7
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 6.3e-14 83.6 82 57.3
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-13 82.8 70 61.4
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 4.5e-12 77.4 46 82.6
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 5.5e-10 70.5 122 34.4
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 2.1e-09 68.6 74 48.6
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 8.0e-09 66.6 64 59.4
arahy.Tifrunner.gnm1.ann1.9BGN79 Arachis hypogaea HOM05D002219 ORTHO05D002713 9.8e-07 59.7 43 72.1
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 1.7e-06 58.9 52 59.6
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 3.7e-06 57.8 79 45.6
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 3.7e-06 57.8 51 60.8
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 6.3e-06 57.0 54 46.3


User provided reference genes

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