Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00081g0000031 Lotus japonicus HOM05D003857 ORTHO05D004454 4.6e-43 177.6 94 100.0
Medtr5g095660 Medicago truncatula HOM05D003857 ORTHO05D004454 4.6e-19 97.8 92 56.5
TPR.G8580 Trifolium pratense HOM05D003857 ORTHO05D004454 3.3e-17 91.7 99 51.5
arahy.Tifrunner.gnm1.ann1.QWC3QU Arachis hypogaea HOM05D003857 ORTHO05D004454 9.7e-17 90.1 89 57.3
arahy.Tifrunner.gnm1.ann1.Y3WDI1 Arachis hypogaea HOM05D003857 ORTHO05D004454 9.7e-17 90.1 89 57.3
Phvul.008G278500 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.4e-15 86.3 99 56.6
Glyma.02G299800 Glycine max HOM05D003857 ORTHO05D004454 1.5e-14 82.8 100 56.0
Glyma.18G078100 Glycine max HOM05D003857 ORTHO05D004454 2.6e-14 82.0 98 52.0
Glyma.08G328700 Glycine max HOM05D003857 ORTHO05D004454 1.9e-12 75.9 98 48.0
Lalb_Chr17g0348931 Lupinus albus HOM05D003857 ORTHO05D004454 1.9e-12 75.9 102 49.0
Prupe.4G242100 Prunus persica HOM05D003857 ORTHO05D004454 1.0e-10 70.1 93 44.1
Gohir.A13G133501 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.8e-10 69.3 97 45.4
Gohir.D13G136800 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.8e-10 69.3 97 45.4
Gorai.013G153300 Gossypium raimondii HOM05D003857 ORTHO05D004454 1.8e-10 69.3 97 45.4
FAN21G0934 Fragaria x ananassa HOM05D003857 ORTHO05D004454 5.1e-10 67.8 96 43.8
Phvul.006G056400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 5.1e-10 67.8 98 46.9
PGR083G2342 Punica granatum HOM05D003857 ORTHO05D004454 5.1e-10 67.8 85 48.2
FvH4_3g29390 Fragaria vesca HOM05D003857 ORTHO05D004454 6.7e-10 67.4 96 43.8
FAN25G1727 Fragaria x ananassa HOM05D003857 ORTHO05D004454 6.7e-10 67.4 96 43.8
MD03G1183900 Malus domestica HOM05D003857 ORTHO05D004454 6.7e-10 67.4 95 46.3
QL08p004552 Quercus lobata HOM05D003857 ORTHO05D004454 8.8e-10 67.0 97 45.4
Ciclev10009964m.g Citrus clementina HOM05D003857 ORTHO05D004454 1.1e-09 66.6 83 45.8
CsaV3_3G004060 Cucumis sativus L. HOM05D003857 ORTHO05D004454 1.1e-09 66.6 94 46.8
FAN16G1576 Fragaria x ananassa HOM05D003857 ORTHO05D004454 1.1e-09 66.6 96 43.8
QL08p004432 Quercus lobata HOM05D003857 ORTHO05D004454 1.1e-09 66.6 97 45.4
ClCG10G004230 Citrullus lanatus HOM05D003857 ORTHO05D004454 2.0e-09 65.9 82 48.8
ClCG10G004260 Citrullus lanatus HOM05D003857 ORTHO05D004454 2.0e-09 65.9 82 48.8
MD11G1200800 Malus domestica HOM05D003857 ORTHO05D004454 2.0e-09 65.9 96 44.8
TWI38G0553 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 2.0e-09 65.9 97 43.3
COL.COLO4_09818 Corchorus olitorius HOM05D003857 ORTHO05D004454 3.3e-09 65.1 97 43.3
RcHm_v2.0_Chr5g0053811 Rosa chinensis HOM05D003857 ORTHO05D004454 4.3e-09 64.7 92 44.6
FAN11G0618 Fragaria x ananassa HOM05D003857 ORTHO05D004454 5.7e-09 64.3 87 46.0
Oeu014353.1 Olea europaea HOM05D003857 ORTHO05D004454 5.7e-09 64.3 86 40.7
Hund01891 Selenicereus undatus HOM05D003857 ORTHO05D004454 7.4e-09 63.9 93 38.7
Thecc.07G015100 Theobroma cacao HOM05D003857 ORTHO05D004454 7.4e-09 63.9 97 41.2
CANSAT11G1184 Cannabis sativa HOM05D003857 ORTHO05D004454 9.7e-09 63.5 84 44.0
Atru.chr2.3676 Acer truncatum HOM05D003857 ORTHO05D004454 4.8e-08 61.2 91 41.8
Manes.03G140433 Manihot esculenta HOM05D003857 ORTHO05D004454 6.3e-08 60.8 98 40.8
Manes.03G140500 Manihot esculenta HOM05D003857 ORTHO05D004454 6.3e-08 60.8 98 40.8
AL7G38610 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 8.2e-08 60.5 94 41.5
Thhalv10027070m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 1.1e-07 60.1 94 38.3
Nn1g07497 Nelumbo nucifera HOM05D003857 ORTHO05D004454 1.1e-07 60.1 92 41.3
Potri.001G366900 Populus trichocarpa HOM05D003857 ORTHO05D004454 1.1e-07 60.1 97 43.3
Aa31LG2G12460 Aethionema arabicum HOM05D003857 ORTHO05D004454 1.4e-07 59.7 94 38.3
AT4G16400 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 1.8e-07 59.3 93 39.8
EL10Ac4g07592 Beta vulgaris HOM05D003857 ORTHO05D004454 2.4e-07 58.9 87 43.7
Potri.006G017900 Populus trichocarpa HOM05D003857 ORTHO05D004454 2.4e-07 58.9 97 38.1
Nitab4.5_0006886g0010 Nicotiana tabacum HOM05D003857 ORTHO05D004454 3.1e-07 58.5 85 43.5
Sc03g0011180 Simmondsia chinensis HOM05D003857 ORTHO05D004454 3.1e-07 58.5 102 42.2
GSVIVG01003487001 Vitis vinifera HOM05D003857 ORTHO05D004454 3.1e-07 58.5 89 38.2
Carub.0007s2513 Capsella rubella HOM05D003857 ORTHO05D004454 6.9e-07 57.4 83 41.0
BcaC07g37984 Brassica carinata HOM05D003857 ORTHO05D004454 9.1e-07 57.0 94 38.3
BolC8t48365H Brassica oleracea HOM05D003857 ORTHO05D004454 9.1e-07 57.0 94 38.3
BraA08t33236Z Brassica rapa HOM05D003857 ORTHO05D004454 9.1e-07 57.0 94 37.2
Potri.016G007101 Populus trichocarpa HOM05D003857 ORTHO05D004454 9.1e-07 57.0 88 40.9
Aqoxy1G04245 Aquilegia oxysepala HOM05D003857 ORTHO05D004454 1.5e-06 56.2 97 36.1
Hma1.2p1_0889F.1_g232820 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 1.5e-06 56.2 84 40.5
Nitab4.5_0000461g0260 Nicotiana tabacum HOM05D003857 ORTHO05D004454 1.5e-06 56.2 84 39.3
Oeu041436.1 Olea europaea HOM05D003857 ORTHO05D004454 1.5e-06 56.2 86 37.2
CiPaw.12G137500 Carya illinoinensis HOM05D003857 ORTHO05D004454 2.0e-06 55.8 97 37.1
Haze_07004 Corylus avellana HOM05D003857 ORTHO05D004454 2.0e-06 55.8 87 39.1
Manes.15G060900 Manihot esculenta HOM05D003857 ORTHO05D004454 2.0e-06 55.8 86 39.5
Sabra06G0013000 Salix brachista HOM05D003857 ORTHO05D004454 2.0e-06 55.8 97 37.1
Sopen07g033670 Solanum pennellii HOM05D003857 ORTHO05D004454 2.0e-06 55.8 95 38.9
SGA_v2.0_scaffold8G04405 Striga asiatica HOM05D003857 ORTHO05D004454 2.0e-06 55.8 85 38.8
Manes.08G070300 Manihot esculenta HOM05D003857 ORTHO05D004454 2.6e-06 55.5 90 37.8
Solyc07g065460.1 Solanum lycopersicum HOM05D003857 ORTHO05D004454 2.6e-06 55.5 95 38.9
A08p12220 Brassica napus HOM05D003857 ORTHO05D004454 3.4e-06 55.1 94 36.2
Rhsim13G0142200 Rhododendron simsii HOM05D003857 ORTHO05D004454 4.5e-06 54.7 87 40.2
Thecc.06G238500 Theobroma cacao HOM05D003857 ORTHO05D004454 4.5e-06 54.7 89 38.2
TAR629G0922 Trochodendron aralioides HOM05D003857 ORTHO05D004454 4.5e-06 54.7 86 39.5
HanXRQChr05g0161821 Helianthus annuus HOM05D003857 ORTHO05D004454 5.9e-06 54.3 90 37.8
PSO210G1156 Papaver somniferum HOM05D003857 ORTHO05D004454 5.9e-06 54.3 93 38.7
A01p40370 Brassica napus HOM05D003857 ORTHO05D004454 7.7e-06 53.9 88 38.6
A03p49780 Brassica napus HOM05D003857 ORTHO05D004454 7.7e-06 53.9 84 34.5
BraA01t02029Z Brassica rapa HOM05D003857 ORTHO05D004454 7.7e-06 53.9 91 35.2
BraA01t04072Z Brassica rapa HOM05D003857 ORTHO05D004454 7.7e-06 53.9 88 38.6
BraA03t14073Z Brassica rapa HOM05D003857 ORTHO05D004454 7.7e-06 53.9 84 34.5
AUR62036444 Chenopodium quinoa HOM05D003857 ORTHO05D004454 7.7e-06 53.9 86 38.4


User provided reference genes

Program Settings