Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 7.3e-93 344.0 184 100.0
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 1.6e-68 263.1 181 80.7
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 8.1e-68 260.8 185 77.3
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 5.2e-67 258.1 186 78.0
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 1.5e-66 256.5 187 78.1
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 2.0e-66 256.1 187 78.1
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 1.1e-64 250.4 182 76.9
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 2.7e-63 245.7 189 74.6
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 5.1e-62 241.5 184 75.0
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 2.3e-54 216.1 188 68.1
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 1.1e-53 213.8 186 67.2
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 5.6e-53 211.5 185 65.9
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 2.1e-52 209.5 188 65.4
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.8e-52 209.1 187 69.5
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 1.8e-51 206.5 187 64.2
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.8e-51 206.5 186 68.8
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 2.4e-51 206.1 184 65.2
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 2.4e-51 206.1 184 65.8
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 3.1e-51 205.7 182 68.1
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 4.0e-51 205.3 188 64.9
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 1.2e-50 203.8 182 66.5
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 4.5e-50 201.8 191 62.3
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 4.5e-50 201.8 168 69.0
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 1.3e-49 200.3 182 65.9
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 2.2e-49 199.5 191 61.8
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 2.2e-49 199.5 190 64.2
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 2.2e-49 199.5 188 60.1
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 2.9e-49 199.1 194 61.9
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 2.9e-49 199.1 188 65.4
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 2.9e-49 199.1 190 62.1
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 1.1e-48 197.2 183 64.5
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 2.4e-48 196.1 193 61.7
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 4.2e-48 195.3 225 54.7
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 4.2e-48 195.3 195 62.1
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 5.4e-48 194.9 156 69.2
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 9.3e-48 194.1 163 66.9
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 1.6e-47 193.4 187 63.1
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 6.0e-47 191.4 192 62.5
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 1.3e-46 190.3 188 63.8
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 2.3e-46 189.5 192 62.0
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 3.0e-46 189.1 191 62.3
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 5.1e-46 188.3 186 61.8
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 5.1e-46 188.3 193 61.1
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 6.7e-46 188.0 135 74.8
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 1.1e-45 187.2 187 62.0
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 1.5e-45 186.8 194 62.4
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 3.3e-45 185.7 192 62.0
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 4.3e-45 185.3 188 63.3
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 7.4e-45 184.5 161 63.4
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 1.3e-44 183.7 177 63.3
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 2.1e-44 183.0 191 59.7
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 6.2e-44 181.4 179 63.7
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 6.2e-44 181.4 190 60.5
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 8.1e-44 181.0 187 60.4
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 1.4e-43 180.3 125 80.0
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 2.4e-43 179.5 188 58.5
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 4.0e-43 178.7 156 65.4
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 5.3e-43 178.3 187 59.4
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 9.0e-43 177.6 183 57.4
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 1.5e-42 176.8 181 58.0
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 5.8e-42 174.9 226 52.2
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 1.7e-41 173.3 191 60.7
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 2.2e-41 172.9 179 59.8
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 3.8e-41 172.2 193 57.5
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 1.1e-40 170.6 154 66.9
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 1.4e-40 170.2 186 59.7
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 1.4e-40 170.2 186 59.7
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 1.4e-40 170.2 186 59.7
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 3.2e-40 169.1 198 59.6
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 7.1e-40 167.9 190 56.3
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 1.2e-39 167.2 121 77.7
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.6e-39 166.8 190 53.2
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 2.1e-39 166.4 169 60.4
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 2.1e-39 166.4 98 86.7
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 2.7e-39 166.0 148 63.5
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 4.6e-39 165.2 192 57.3
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 6.0e-39 164.9 122 73.8
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 1.0e-38 164.1 122 75.4
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 1.8e-38 163.3 197 56.9
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 2.3e-38 162.9 132 68.9
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 2.3e-38 162.9 124 69.4
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 3.0e-38 162.5 202 54.0
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 3.0e-38 162.5 193 57.0
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 3.0e-38 162.5 195 55.4
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 6.7e-38 161.4 192 56.8
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.3e-36 157.1 151 60.9
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 3.1e-35 152.5 190 55.3
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 1.2e-34 150.6 185 50.8
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 1.3e-33 147.1 87 83.9
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 5.0e-33 145.2 100 77.0
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 6.5e-33 144.8 172 54.1
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 8.4e-33 144.4 174 55.2
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 1.0e-30 137.5 202 48.0
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 1.0e-30 137.5 202 48.0
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 1.8e-30 136.7 176 51.1
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 1.9e-29 133.3 133 60.2
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 5.7e-29 131.7 128 60.2
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 1.3e-28 130.6 188 51.1
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 1.1e-27 127.5 149 52.3
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 1.8e-27 126.7 120 59.2
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 3.8e-25 119.0 130 57.7
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 5.0e-25 118.6 124 59.7
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 6.5e-25 118.2 124 57.3
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 4.2e-24 115.5 84 73.8
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 3.6e-23 112.5 97 63.9
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 5.1e-22 108.6 82 73.2
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 5.1e-22 108.6 82 73.2
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 5.3e-19 98.6 124 54.8
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 5.9e-18 95.1 155 38.7
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.0e-17 94.4 91 58.2
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 2.7e-15 86.3 80 61.2
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 3.6e-15 85.9 139 40.3
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 1.5e-13 80.5 158 36.1
Psat2g016880 Pisum sativum HOM05D006899 ORTHO05D008566 8.2e-12 74.7 87 56.3
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 1.4e-11 73.9 90 48.9
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 2.5e-08 63.2 69 40.6


User provided reference genes

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