Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 7.7e-32 139.8 68 100.0
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 7.7e-24 113.2 70 82.9
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 8.3e-18 93.2 68 66.2
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 2.4e-17 91.7 70 71.4
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 2.4e-17 91.7 66 75.8
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 3.1e-17 91.3 70 71.4
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 9.1e-17 89.7 68 64.7
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 1.2e-16 89.4 70 71.4
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 1.2e-16 89.4 70 71.4
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 1.2e-16 89.4 68 63.2
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.7e-15 85.5 66 71.2
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.9e-15 84.7 71 62.0
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 6.5e-15 83.6 70 62.9
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.5e-14 82.4 62 62.9
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.5e-14 82.4 62 62.9
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 1.5e-14 82.4 60 68.3
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.5e-14 82.4 60 68.3
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.5e-14 82.4 60 68.3
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 1.5e-14 82.4 70 58.6
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 1.9e-14 82.0 72 56.9
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 4.2e-14 80.9 67 58.2
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 4.2e-14 80.9 71 63.4
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 4.2e-14 80.9 74 58.1
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 9.4e-14 79.7 60 66.7
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.2e-13 79.3 70 57.1
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.6e-13 79.0 70 57.1
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.6e-13 79.0 72 55.6
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 3.6e-13 77.8 70 60.0
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 4.7e-13 77.4 69 58.0
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 8.0e-13 76.6 67 62.7
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 8.0e-13 76.6 70 58.6
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.0e-12 76.3 69 58.0
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 1.4e-12 75.9 69 59.4
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 1.4e-12 75.9 72 58.3
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.8e-12 75.5 59 59.3
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.8e-12 75.5 71 56.3
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.8e-12 75.5 71 56.3
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.3e-12 75.1 71 56.3
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.3e-12 75.1 71 53.5
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 3.0e-12 74.7 73 53.4
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 3.0e-12 74.7 68 63.2
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 5.2e-12 73.9 70 60.0
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 5.2e-12 73.9 72 54.2
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 8.8e-12 73.2 71 56.3
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 1.2e-11 72.8 67 59.7
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 2.0e-11 72.0 72 51.4
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.6e-11 71.6 66 54.5
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 2.6e-11 71.6 72 58.3
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 3.4e-11 71.2 69 50.7
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 4.4e-11 70.9 67 52.2
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 5.7e-11 70.5 57 59.6
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 7.5e-11 70.1 67 58.2
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 9.8e-11 69.7 70 60.0
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.3e-10 69.3 66 56.1
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 1.3e-10 69.3 72 47.2
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.8e-10 67.4 75 52.0
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 6.3e-10 67.0 71 53.5
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 6.3e-10 67.0 71 53.5
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.1e-09 66.2 76 51.3
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.1e-09 66.2 73 50.7
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 1.1e-09 66.2 73 50.7
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 2.4e-09 65.1 68 50.0
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.4e-09 65.1 71 52.1
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.4e-09 65.1 75 50.7
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 2.4e-09 65.1 46 71.7
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 4.1e-09 64.3 47 61.7
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 5.4e-09 63.9 75 50.7
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 5.4e-09 63.9 55 60.0
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 9.1e-09 63.2 57 52.6
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 9.1e-09 63.2 73 47.9
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 1.6e-08 62.4 48 66.7
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.0e-08 62.0 65 47.7
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 3.5e-08 61.2 73 49.3
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 4.5e-08 60.8 69 50.7
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 4.5e-08 60.8 47 57.4
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 5.9e-08 60.5 58 50.0
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 1.0e-07 59.7 48 64.6
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 1.3e-07 59.3 46 63.0
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 1.3e-07 59.3 46 63.0
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 1.7e-07 58.9 46 63.0
Glyma.05G129200 Glycine max HOM05D006911 ORTHO05D006663 1.7e-07 58.9 70 48.6
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 1.7e-07 58.9 73 49.3
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 2.9e-07 58.2 69 47.8
AT5G46295 Arabidopsis thaliana HOM05D010376 ORTHO05D006663 3.8e-07 57.8 44 59.1
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 3.8e-07 57.8 68 45.6
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 3.8e-07 57.8 68 47.1
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 3.8e-07 57.8 74 45.9
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 5.0e-07 57.4 53 54.7
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 5.0e-07 57.4 45 64.4
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 5.0e-07 57.4 68 48.5
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 6.6e-07 57.0 57 50.9
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 6.6e-07 57.0 46 60.9
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 6.6e-07 57.0 46 60.9
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 6.6e-07 57.0 52 57.7
MELO3C007147.2 Cucumis melo HOM05D006911 ORTHO05D006663 6.6e-07 57.0 68 45.6
Lalb_Chr07g0188701 Lupinus albus HOM05D006911 ORTHO05D006663 6.6e-07 57.0 74 50.0
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 8.6e-07 56.6 64 50.0
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 8.6e-07 56.6 48 62.5
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 1.5e-06 55.8 44 56.8
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 1.5e-06 55.8 44 56.8
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 1.5e-06 55.8 51 60.8
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 1.5e-06 55.8 64 50.0
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 1.9e-06 55.5 44 56.8
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 2.5e-06 55.1 46 58.7
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 2.5e-06 55.1 54 53.7
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 3.3e-06 54.7 44 56.8
C07p29520 Brassica napus HOM05D010376 ORTHO05D006663 3.3e-06 54.7 44 56.8
BolC7t43501H Brassica oleracea HOM05D010376 ORTHO05D006663 3.3e-06 54.7 44 56.8
A02p29830 Brassica napus HOM05D010376 ORTHO05D006663 4.2e-06 54.3 71 43.7
Lsat_1_v5_gn_1_96620 Lactuca sativa HOM05D006911 ORTHO05D006663 4.2e-06 54.3 69 49.3
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 5.5e-06 53.9 68 45.6
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 5.5e-06 53.9 44 54.5
BcaC03g16845 Brassica carinata HOM05D010376 ORTHO05D006663 5.5e-06 53.9 44 54.5
C02p47270 Brassica napus HOM05D010376 ORTHO05D006663 5.5e-06 53.9 44 54.5
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 5.5e-06 53.9 41 56.1
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 7.2e-06 53.5 54 50.0
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 7.2e-06 53.5 68 45.6
Aqoxy6G00602 Aquilegia oxysepala HOM05D006911 ORTHO05D006663 9.5e-06 53.1 68 44.1


User provided reference genes

Program Settings