Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1805.8 933 100.0
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1639.0 933 91.1
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1550.0 934 86.5
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1538.5 973 82.1
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1535.4 929 85.0
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1531.2 941 84.3
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1530.8 930 85.4
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1524.6 930 84.7
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1511.1 934 83.9
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1493.4 934 83.2
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1335.5 932 74.8
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1304.3 935 73.3
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1300.0 1007 69.3
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1291.2 935 72.0
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1285.8 933 71.3
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1278.5 932 71.6
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1277.3 933 72.6
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1271.5 931 70.9
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1270.4 935 71.0
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1267.7 935 71.8
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1265.4 931 71.2
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1261.5 923 72.2
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1260.4 949 69.9
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1257.3 949 70.0
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1251.5 931 70.1
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1244.2 933 70.8
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1241.5 923 70.6
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1231.1 931 69.3
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1230.7 931 69.2
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1219.5 926 68.9
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1213.0 943 68.3
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1206.8 1086 62.2
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1203.7 859 73.8
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1203.0 932 69.0
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1202.6 925 68.2
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1194.9 1099 60.5
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1187.2 929 67.6
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1172.5 883 69.8
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1164.1 930 65.5
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1157.9 951 65.1
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1156.4 941 66.4
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1154.4 934 65.1
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1154.0 875 68.3
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1144.8 926 65.6
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1142.1 921 65.7
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1140.6 920 64.9
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1137.1 921 65.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1130.9 933 64.2
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1116.7 925 63.8
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1116.7 924 63.9
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1111.7 934 63.1
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1111.7 972 61.5
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1109.7 928 63.3
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1105.1 928 62.8
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1100.1 934 62.6
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 0.0e+00 1097.0 773 74.0
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 0.0e+00 1097.0 910 65.3
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1095.5 928 63.3
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1094.3 923 63.1
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1093.2 928 63.3
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1091.3 928 63.0
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1091.3 934 62.2
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1090.1 933 63.2
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1079.3 881 64.6
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1076.6 928 62.3
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1075.1 918 62.6
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 1.3e-311 1073.2 921 62.9
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 7.0e-309 1063.9 924 61.7
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.0e-307 1060.1 997 58.4
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 1.1e-306 1056.6 934 60.0
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.4e-304 1049.7 925 61.2
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 2.3e-304 1048.9 938 63.6
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 2.7e-300 1035.4 953 59.4
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 3.4e-295 1018.5 771 69.6
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 4.4e-295 1018.1 933 59.7
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.2e-292 1010.0 883 61.7
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 3.8e-291 1005.0 927 59.1
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 5.0e-291 1004.6 925 58.8
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 8.0e-289 997.3 942 57.5
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 4.9e-286 988.0 871 60.0
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.0e-283 980.3 929 57.5
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 3.9e-283 978.4 1033 53.6
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 1.8e-280 969.5 716 71.2
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 3.1e-280 968.8 1154 50.1
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 4.0e-280 968.4 571 85.1
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 7.0e-277 957.6 932 58.0
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 7.5e-271 937.6 732 66.9
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.7e-262 909.8 920 54.3
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 2.2e-262 909.4 640 74.2
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 8.3e-262 907.5 969 53.0
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 2.7e-260 902.5 936 54.0
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 3.8e-246 855.5 654 68.3
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 2.1e-244 849.7 925 51.8
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.0e-243 847.4 611 72.5
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 3.9e-243 845.5 735 62.0
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 8.7e-243 844.3 785 59.1
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 8.1e-233 811.2 496 83.3
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 8.2e-217 758.1 432 90.7
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 2.5e-213 746.5 563 68.7
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 5.5e-213 745.3 529 74.3
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 2.9e-169 600.1 944 42.2
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-165 587.8 512 59.8
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 5.6e-165 585.9 436 69.3
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 8.3e-161 572.0 473 66.2
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 4.3e-149 533.1 919 40.7
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 1.5e-141 508.1 605 49.6
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 2.5e-141 507.3 918 38.0
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.8e-139 501.1 360 72.5
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 1.2e-138 498.4 305 86.2
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 2.2e-137 494.2 420 61.9
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 5.1e-134 483.0 916 36.6
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 4.2e-128 463.4 940 34.9
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 9.3e-112 409.1 644 41.6
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-99 369.0 575 39.8
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 4.2e-96 357.1 243 75.7
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 3.4e-90 337.4 228 75.9
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 4.2e-88 330.5 221 78.3
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 7.9e-87 326.2 699 35.8
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 5.7e-85 320.1 280 59.6
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 3.0e-78 297.7 283 61.5
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.4e-70 272.3 602 35.2
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 8.5e-65 253.1 161 78.9
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 3.5e-58 231.1 180 68.3
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 1.7e-57 228.8 260 50.0
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 3.0e-54 218.0 129 84.5
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 3.4e-53 214.5 152 68.4
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.2e-45 189.5 163 64.4
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 7.5e-45 186.8 135 69.6
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 2.3e-41 175.3 154 65.6
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 3.1e-38 164.9 118 67.8
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 6.6e-33 147.1 103 67.0
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.9e-27 129.0 147 55.8
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 5.4e-27 127.5 84 82.1
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.0e-26 124.0 188 42.0
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 3.9e-25 121.3 282 33.7
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.2e-23 116.3 120 51.7
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.0e-21 109.0 90 55.6
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.2e-20 105.5 105 55.2
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 5.4e-19 100.9 65 76.9
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 4.6e-18 97.8 100 61.0
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 1.1e-16 93.2 166 37.3
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 9.6e-16 90.1 166 36.7
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.4e-14 85.5 69 60.9
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 5.8e-13 80.9 67 58.2
TPR.G31053 Trifolium pratense HOM05D033735 ORTHO05D410983 4.9e-12 77.8 206 29.1
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 1.9e-11 75.9 938 20.1
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 2.4e-11 75.5 88 45.5
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 7.1e-11 73.9 68 61.8
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.2e-10 73.2 66 65.2
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 3.9e-09 68.2 113 38.1
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 4.3e-08 64.7 76 44.7
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 8.1e-07 60.5 240 25.4


User provided reference genes

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