Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 2.2e-60 235.3 112 100.0
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 5.6e-56 220.7 112 92.0
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 9.6e-56 219.9 112 92.0
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 4.8e-55 217.6 112 91.1
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 1.4e-54 216.1 112 90.2
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 5.3e-54 214.2 112 90.2
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 6.9e-54 213.8 112 90.2
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 9.0e-54 213.4 112 89.3
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 9.0e-54 213.4 112 88.4
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 2.6e-53 211.8 112 88.4
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 3.4e-53 211.5 112 87.5
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 3.4e-53 211.5 112 89.3
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 3.4e-53 211.5 112 88.4
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 3.4e-53 211.5 112 88.4
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 4.5e-53 211.1 112 88.4
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 7.6e-53 210.3 112 85.7
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 7.6e-53 210.3 111 87.4
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.0e-52 209.9 112 87.5
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 1.7e-52 209.1 112 89.3
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 2.2e-52 208.8 112 87.5
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 2.9e-52 208.4 112 86.6
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 3.8e-52 208.0 112 85.7
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 4.9e-52 207.6 112 84.8
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 87.5
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 84.8
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 85.7
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 8.4e-52 206.8 112 85.7
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 8.4e-52 206.8 112 85.7
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 1.1e-51 206.5 112 85.7
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 1.1e-51 206.5 112 85.7
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 1.4e-51 206.1 112 86.6
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 1.9e-51 205.7 112 84.8
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 3.2e-51 204.9 112 85.7
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 3.2e-51 204.9 112 86.6
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 5.5e-51 204.1 112 86.6
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 5.5e-51 204.1 112 83.9
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 1.2e-50 203.0 112 83.9
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 2.1e-50 202.2 112 84.8
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 2.1e-50 202.2 112 83.9
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 2.7e-50 201.8 112 83.9
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 83.9
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 86.6
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 83.9
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 4.6e-50 201.1 112 82.1
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 4.6e-50 201.1 111 85.6
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 6.0e-50 200.7 112 82.1
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 7.9e-50 200.3 112 83.9
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 1.3e-49 199.5 112 83.9
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 80.4
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 2.3e-49 198.7 112 83.0
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 2.3e-49 198.7 112 83.0
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 3.0e-49 198.4 112 83.0
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 3.0e-49 198.4 112 83.0
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 82.1
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 82.1
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 3.9e-49 198.0 112 83.9
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 82.1
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 82.1
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 5.1e-49 197.6 117 82.9
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 83.0
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 5.1e-49 197.6 110 85.5
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 82.1
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 82.1
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 81.2
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 81.2
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 8.7e-49 196.8 112 82.1
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 81.2
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 82.1
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 83.0
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 1.5e-48 196.1 111 82.9
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 1.9e-48 195.7 112 80.4
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 1.9e-48 195.7 112 80.4
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 2.5e-48 195.3 112 81.2
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 2.5e-48 195.3 112 80.4
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 4.8e-47 191.0 145 66.9
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.4e-46 189.5 100 88.0
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 3.1e-46 188.3 140 68.6
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 3.1e-46 188.3 112 76.8
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.3e-46 187.6 127 73.2
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 9.0e-46 186.8 112 80.4
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.5e-45 186.0 127 72.4
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.5e-45 186.0 127 72.4
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 2.6e-45 185.3 107 79.4
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 5.9e-45 184.1 107 78.5
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 7.6e-45 183.7 98 87.8
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 1.0e-44 183.3 139 65.5
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 3.8e-44 181.4 110 79.1
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 5.0e-44 181.0 112 74.1
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 5.0e-44 181.0 112 74.1
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 5.0e-44 181.0 112 74.1
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 1.4e-43 179.5 112 72.3
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 2.7e-42 175.3 112 73.2
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 1.1e-40 169.9 98 80.6
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 5.7e-40 167.5 98 80.6
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 5.7e-40 167.5 129 65.1
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 2.2e-39 165.6 99 78.8
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 4.8e-39 164.5 96 78.1
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 3.1e-38 161.8 155 52.9
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 2.9e-36 155.2 109 67.0
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 3.2e-35 151.8 79 88.6
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 1.6e-34 149.4 108 68.5
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 1.0e-33 146.7 88 73.9
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 1.8e-33 146.0 79 86.1
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 6.7e-33 144.1 111 58.6
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 4.4e-32 141.4 79 78.5
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.8e-30 136.0 98 66.3
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 9.1e-30 133.7 75 86.7
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 1.7e-28 129.4 75 82.7
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 1.2e-26 123.2 108 59.3
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 3.6e-26 121.7 108 51.9
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.4e-25 119.8 63 82.5
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 1.4e-25 119.8 82 69.5
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.9e-25 118.2 63 81.0
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 6.7e-25 117.5 63 79.4
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.1e-24 116.7 63 79.4
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 2.0e-24 115.9 69 81.2
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.3e-23 113.2 74 71.6
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 1.7e-23 112.8 63 77.8
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 1.8e-22 109.4 76 61.8
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 1.2e-21 106.7 63 74.6
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 5.5e-19 97.8 48 91.7
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 3.6e-18 95.1 110 48.2
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 3.6e-18 95.1 110 48.2
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 3.3e-16 88.6 152 40.8
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 2.0e-13 79.3 44 84.1
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 5.0e-12 74.7 40 82.5
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 1.8e-09 66.2 37 73.0
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 2.6e-08 62.4 50 68.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 2.6e-08 62.4 50 68.0
TAR375G0899 Trochodendron aralioides HOM05D000612 ORTHO05D030704 1.8e-06 56.2 65 49.2


User provided reference genes

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