Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 2.3e-125 452.2 224 100.0
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 3.5e-73 278.9 197 78.7
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 2.8e-62 242.7 239 57.7
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 8.1e-62 241.1 122 100.0
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 8.1e-62 241.1 122 100.0
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 6.4e-59 231.5 188 66.0
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 1.9e-58 229.9 190 65.8
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 1.2e-57 227.3 189 63.5
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 2.1e-57 226.5 168 69.6
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 7.8e-57 224.6 194 61.9
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 3.9e-56 222.2 191 60.7
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 1.5e-55 220.3 188 60.1
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 5.6e-55 218.4 239 50.6
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 5.6e-55 218.4 177 63.3
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 7.3e-55 218.0 177 63.3
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 2.1e-54 216.5 168 63.7
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 3.6e-54 215.7 201 59.2
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 8.1e-54 214.5 231 52.4
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 8.1e-54 214.5 219 55.7
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 1.8e-53 213.4 188 58.5
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 1.8e-53 213.4 241 51.9
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 1.8e-53 213.4 201 58.7
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 3.1e-53 212.6 201 58.7
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 3.1e-53 212.6 190 57.9
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 3.1e-53 212.6 248 51.6
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 4.0e-53 212.2 180 61.1
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 4.0e-53 212.2 176 61.9
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 5.2e-53 211.8 245 49.0
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 5.2e-53 211.8 194 58.2
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 5.2e-53 211.8 187 58.8
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 5.2e-53 211.8 190 59.5
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 5.2e-53 211.8 189 59.8
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 6.8e-53 211.5 241 53.1
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 8.9e-53 211.1 225 53.3
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 8.9e-53 211.1 240 50.8
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.2e-52 210.7 167 64.1
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.2e-52 210.7 188 57.4
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 2.0e-52 209.9 176 61.9
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 2.0e-52 209.9 174 62.6
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 2.0e-52 209.9 182 60.4
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 2.6e-52 209.5 163 65.0
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 2.6e-52 209.5 195 56.9
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 3.4e-52 209.1 193 60.1
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 3.4e-52 209.1 176 61.4
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 3.4e-52 209.1 227 50.7
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 4.4e-52 208.8 187 57.8
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 4.4e-52 208.8 193 58.0
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 5.8e-52 208.4 219 52.1
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 7.6e-52 208.0 166 61.4
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 9.9e-52 207.6 166 61.4
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 1.3e-51 207.2 166 61.4
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 1.3e-51 207.2 195 59.0
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 1.3e-51 207.2 179 60.3
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 1.3e-51 207.2 216 53.2
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 1.7e-51 206.8 177 58.8
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.7e-51 206.8 195 59.0
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 2.2e-51 206.5 188 57.4
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 2.2e-51 206.5 165 61.8
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 3.8e-51 205.7 177 58.8
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 3.8e-51 205.7 226 51.3
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 4.9e-51 205.3 166 61.4
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 6.4e-51 204.9 188 60.1
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 6.4e-51 204.9 230 51.3
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 6.4e-51 204.9 244 48.8
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 8.4e-51 204.5 166 60.8
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 8.4e-51 204.5 193 57.0
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 1.1e-50 204.1 218 53.2
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 1.1e-50 204.1 167 62.3
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 1.4e-50 203.8 176 56.8
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 1.4e-50 203.8 176 56.8
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 1.9e-50 203.4 177 57.6
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 1.9e-50 203.4 161 63.4
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 1.9e-50 203.4 167 61.7
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 5.4e-50 201.8 250 48.4
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 5.4e-50 201.8 225 51.6
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 5.4e-50 201.8 166 59.6
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 5.4e-50 201.8 188 55.9
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 7.1e-50 201.4 190 57.4
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 9.3e-50 201.1 179 59.2
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 9.3e-50 201.1 189 57.7
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.2e-49 200.7 188 55.9
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 1.2e-49 200.7 163 60.7
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 1.2e-49 200.7 177 58.2
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 1.2e-49 200.7 167 62.3
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 1.6e-49 200.3 194 55.2
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 3.5e-49 199.1 167 59.9
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 4.6e-49 198.7 191 55.0
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 1.3e-48 197.2 166 60.2
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 1.7e-48 196.8 164 61.0
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 3.0e-48 196.1 185 56.2
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 3.9e-48 195.7 168 60.1
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 3.9e-48 195.7 244 49.2
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 5.1e-48 195.3 163 62.6
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 5.1e-48 195.3 250 49.6
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 6.6e-48 194.9 163 60.1
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 8.7e-48 194.5 164 59.8
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 8.7e-48 194.5 183 57.4
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 1.9e-47 193.4 171 59.6
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 4.3e-47 192.2 179 57.5
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 5.8e-44 181.8 173 56.1
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 1.3e-43 180.6 213 46.9
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 8.4e-43 177.9 165 57.0
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 1.1e-42 177.6 239 45.2
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 9.3e-42 174.5 314 38.2
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 8.7e-40 167.9 140 58.6
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 9.0e-37 157.9 160 54.4
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 1.3e-35 154.1 161 54.0
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 1.3e-32 144.1 169 50.9
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 3.7e-30 136.0 164 46.3
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 9.0e-29 131.3 83 72.3
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 2.9e-27 126.3 214 36.9
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 5.1e-24 115.5 146 43.8
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 6.7e-24 115.2 87 63.2
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 9.6e-23 111.3 158 40.5
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 2.6e-20 103.2 101 55.4
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 7.9e-17 91.7 46 84.8
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.1e-15 87.8 101 48.5
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.1e-15 87.8 101 48.5
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 5.7e-15 85.5 84 53.6
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 3.1e-13 79.7 115 45.2
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 8.5e-11 71.6 131 35.9
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 2.5e-10 70.1 57 54.4
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 2.1e-09 67.0 90 46.7
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.1e-09 65.5 60 51.7
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 2.6e-07 60.1 82 46.3
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 2.6e-07 60.1 93 39.8


User provided reference genes

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