Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 2.2e-58 228.8 120 100.0
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 1.1e-25 120.2 106 68.9
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 9.4e-25 117.1 107 61.7
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 4.7e-24 114.8 99 69.7
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 6.1e-24 114.4 92 69.6
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 6.1e-24 114.4 102 65.7
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 8.0e-24 114.0 106 63.2
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 1.8e-23 112.8 106 63.2
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 3.0e-23 112.1 104 62.5
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 5.2e-23 111.3 105 66.7
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 5.2e-23 111.3 106 62.3
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 5.2e-23 111.3 105 66.7
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 6.7e-23 110.9 89 67.4
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 8.8e-23 110.5 108 63.9
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 8.8e-23 110.5 105 65.7
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 8.8e-23 110.5 102 64.7
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 8.8e-23 110.5 99 64.6
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 1.5e-22 109.8 111 60.4
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 2.0e-22 109.4 98 65.3
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 2.6e-22 109.0 101 65.3
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 5.7e-22 107.8 107 63.6
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 7.5e-22 107.5 98 66.3
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 9.7e-22 107.1 100 64.0
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 9.7e-22 107.1 97 60.8
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 9.7e-22 107.1 106 61.3
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 1.3e-21 106.7 102 64.7
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 1.3e-21 106.7 97 63.9
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 2.2e-21 105.9 89 67.4
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 3.7e-21 105.1 107 64.5
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 4.8e-21 104.8 107 61.7
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 4.8e-21 104.8 97 64.9
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 6.3e-21 104.4 92 64.1
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 8.3e-21 104.0 98 64.3
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 1.4e-20 103.2 98 64.3
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 1.4e-20 103.2 104 61.5
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.4e-20 103.2 105 62.9
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 1.8e-20 102.8 110 56.4
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 1.8e-20 102.8 106 60.4
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 2.4e-20 102.4 99 59.6
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 2.4e-20 102.4 105 62.9
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 4.1e-20 101.7 104 63.5
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 5.3e-20 101.3 85 68.2
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 9.1e-20 100.5 107 57.0
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 9.1e-20 100.5 99 54.5
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 9.1e-20 100.5 104 62.5
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 2.0e-19 99.4 106 60.4
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 2.0e-19 99.4 116 55.2
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 2.7e-19 99.0 93 60.2
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 3.5e-19 98.6 107 59.8
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 7.7e-19 97.4 104 58.7
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 1.7e-18 96.3 102 54.9
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 1.7e-18 96.3 107 58.9
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 1.7e-18 96.3 105 56.2
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 2.9e-18 95.5 85 63.5
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 2.9e-18 95.5 109 55.0
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 2.9e-18 95.5 105 55.2
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 3.8e-18 95.1 105 60.0
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 3.8e-18 95.1 87 63.2
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 5.0e-18 94.7 107 53.3
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 5.0e-18 94.7 105 55.2
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 8.5e-18 94.0 103 56.3
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 1.5e-17 93.2 88 60.2
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 4.2e-17 91.7 101 61.4
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 7.2e-17 90.9 106 58.5
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 1.2e-16 90.1 98 59.2
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.2e-16 90.1 98 59.2
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.6e-16 89.7 86 64.0
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 1.6e-16 89.7 102 55.9
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 2.1e-16 89.4 78 67.9
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 2.1e-16 89.4 110 50.9
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 2.7e-16 89.0 88 55.7
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 3.6e-16 88.6 110 51.8
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 3.6e-16 88.6 103 55.3
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 4.7e-16 88.2 95 56.8
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 4.7e-16 88.2 100 57.0
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 6.1e-16 87.8 114 49.1
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 1.0e-15 87.0 100 57.0
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 1.8e-15 86.3 105 51.4
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 2.3e-15 85.9 87 60.9
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 4.0e-15 85.1 110 49.1
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 5.2e-15 84.7 88 56.8
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 5.2e-15 84.7 106 55.7
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 5.2e-15 84.7 85 60.0
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 5.2e-15 84.7 96 54.2
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 6.8e-15 84.3 85 60.0
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 6.8e-15 84.3 106 50.0
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 8.8e-15 84.0 81 60.5
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 1.2e-14 83.6 110 48.2
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 1.2e-14 83.6 84 61.9
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 1.2e-14 83.6 105 50.5
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 2.6e-14 82.4 102 51.0
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 7.5e-14 80.9 105 52.4
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 9.8e-14 80.5 105 52.4
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 9.8e-14 80.5 105 52.4
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 1.7e-13 79.7 99 47.5
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 4.8e-13 78.2 105 50.5
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 8.3e-13 77.4 105 50.5
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 8.3e-13 77.4 105 51.4
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 3.5e-11 72.0 97 45.4
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 7.7e-11 70.9 99 48.5
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 2.3e-10 69.3 64 60.9
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 3.8e-10 68.6 99 49.5
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 1.5e-09 66.6 82 52.4
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 7.2e-09 64.3 113 41.6
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 4.7e-08 61.6 80 45.0
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 6.8e-07 57.8 102 41.2
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 6.8e-07 57.8 82 42.7


User provided reference genes

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