Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 1.2e-45 186.0 88 100.0
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.9e-12 74.7 33 93.9
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 3.9e-12 74.7 33 93.9
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.5e-11 72.8 33 90.9
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.5e-11 72.8 33 90.9
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 1.5e-11 72.8 33 90.9
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 1.5e-11 72.8 33 90.9
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 2.5e-11 72.0 33 90.9
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 2.5e-11 72.0 33 90.9
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 2.5e-11 72.0 33 90.9
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 2.5e-11 72.0 33 90.9
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 2.5e-11 72.0 33 90.9
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 2.5e-11 72.0 33 90.9
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 2.5e-11 72.0 33 87.9
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 2.5e-11 72.0 33 87.9
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.5e-11 72.0 33 87.9
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 2.5e-11 72.0 33 87.9
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.3e-11 71.6 33 87.9
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.3e-11 71.6 33 87.9
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.3e-11 71.6 33 87.9
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 3.3e-11 71.6 33 87.9
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 3.3e-11 71.6 33 87.9
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 4.3e-11 71.2 33 87.9
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 4.3e-11 71.2 33 87.9
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 4.3e-11 71.2 33 87.9
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 4.3e-11 71.2 33 87.9
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 4.3e-11 71.2 33 87.9
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 4.3e-11 71.2 33 87.9
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 4.3e-11 71.2 33 87.9
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 4.3e-11 71.2 63 57.1
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.3e-11 71.2 33 87.9
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 4.3e-11 71.2 33 87.9
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 5.7e-11 70.9 32 90.6
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 5.7e-11 70.9 33 87.9
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 5.7e-11 70.9 33 84.8
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 7.4e-11 70.5 40 80.0
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 7.4e-11 70.5 33 87.9
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 7.4e-11 70.5 33 84.8
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 9.7e-11 70.1 33 84.8
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 9.7e-11 70.1 33 84.8
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.7e-11 70.1 33 87.9
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 9.7e-11 70.1 32 90.6
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.3e-10 69.7 33 84.8
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.3e-10 69.7 33 81.8
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.3e-10 69.7 33 81.8
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.3e-10 69.7 33 84.8
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.3e-10 69.7 33 84.8
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.3e-10 69.7 33 84.8
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.7e-10 69.3 33 84.8
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.7e-10 69.3 33 78.8
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.7e-10 69.3 34 82.4
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.7e-10 69.3 34 82.4
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.7e-10 69.3 33 84.8
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 2.2e-10 68.9 33 87.9
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 2.2e-10 68.9 33 84.8
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 2.8e-10 68.6 33 81.8
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.8e-10 68.6 33 84.8
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.8e-10 68.6 67 52.2
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.8e-10 68.6 33 87.9
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.8e-10 68.6 34 79.4
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 4.8e-10 67.8 33 84.8
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 4.8e-10 67.8 33 78.8
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 4.8e-10 67.8 33 78.8
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.8e-10 67.8 33 87.9
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.3e-10 67.4 33 81.8
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.3e-10 67.4 33 81.8
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.3e-10 67.4 33 81.8
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.3e-10 67.4 33 81.8
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 6.3e-10 67.4 32 84.4
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 8.2e-10 67.0 33 81.8
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 8.2e-10 67.0 31 87.1
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 8.2e-10 67.0 32 84.4
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 8.2e-10 67.0 33 84.8
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 1.1e-09 66.6 33 84.8
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.1e-09 66.6 34 79.4
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 1.1e-09 66.6 33 81.8
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.1e-09 66.6 33 78.8
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.4e-09 66.2 33 78.8
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 1.8e-09 65.9 31 87.1
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 1.8e-09 65.9 33 75.8
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 2.4e-09 65.5 33 75.8
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.4e-09 65.5 33 81.8
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.4e-09 65.5 31 80.6
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 2.4e-09 65.5 30 93.3
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 2.4e-09 65.5 33 75.8
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.1e-09 65.1 30 90.0
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.1e-09 65.1 31 83.9
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 3.1e-09 65.1 32 87.5
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 3.1e-09 65.1 33 81.8
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.1e-09 65.1 33 78.8
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 3.1e-09 65.1 33 78.8
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.1e-09 65.1 33 78.8
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 4.1e-09 64.7 33 72.7
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 4.1e-09 64.7 31 83.9
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.1e-09 64.7 33 78.8
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.1e-09 64.7 33 75.8
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 4.1e-09 64.7 33 78.8
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 5.3e-09 64.3 32 84.4
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.3e-09 64.3 33 78.8
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 5.3e-09 64.3 33 72.7
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 5.3e-09 64.3 32 81.2
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 6.9e-09 63.9 30 86.7
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 6.9e-09 63.9 33 75.8
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 6.9e-09 63.9 33 84.8
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.9e-09 63.9 33 78.8
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 9.1e-09 63.5 33 78.8
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 1.2e-08 63.2 30 86.7
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 1.2e-08 63.2 30 86.7
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.2e-08 63.2 82 46.3
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.2e-08 63.2 33 78.8
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.2e-08 63.2 32 81.2
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.2e-08 63.2 33 72.7
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.5e-08 62.8 32 81.2
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.5e-08 62.8 33 72.7
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 1.5e-08 62.8 30 86.7
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.0e-08 62.4 32 78.1
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 2.0e-08 62.4 33 78.8
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 2.0e-08 62.4 33 78.8
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.0e-08 62.4 33 78.8
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 2.6e-08 62.0 33 75.8
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 2.6e-08 62.0 30 86.7
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.6e-08 62.0 32 75.0
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 2.6e-08 62.0 30 86.7
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 3.4e-08 61.6 30 83.3
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 3.4e-08 61.6 30 83.3
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 3.4e-08 61.6 30 83.3
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 3.4e-08 61.6 33 78.8
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 3.4e-08 61.6 33 78.8
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 3.4e-08 61.6 31 80.6
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 4.5e-08 61.2 30 80.0
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 4.5e-08 61.2 30 83.3
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 4.5e-08 61.2 29 86.2
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 5.9e-08 60.8 33 81.8
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 5.9e-08 60.8 33 81.8
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.9e-08 60.8 33 81.8
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 5.9e-08 60.8 28 85.7
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 5.9e-08 60.8 33 75.8
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 5.9e-08 60.8 31 77.4
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 5.9e-08 60.8 29 86.2
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 7.7e-08 60.5 30 83.3
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 7.7e-08 60.5 31 77.4
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 7.7e-08 60.5 33 75.8
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 7.7e-08 60.5 68 47.1
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.0e-07 60.1 30 80.0
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.3e-07 59.7 33 72.7
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.3e-07 59.7 33 72.7
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 1.3e-07 59.7 33 69.7
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.3e-07 59.7 33 72.7
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.7e-07 59.3 33 72.7
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 2.2e-07 58.9 31 80.6
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.2e-07 58.9 40 65.0
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 3.8e-07 58.2 30 80.0
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.8e-07 58.2 30 80.0
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.8e-07 58.2 33 75.8
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 5.0e-07 57.8 33 78.8
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 6.5e-07 57.4 30 73.3
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 8.5e-07 57.0 30 76.7
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 8.5e-07 57.0 32 71.9
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 8.5e-07 57.0 33 72.7
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 1.4e-06 56.2 38 57.9
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.4e-06 56.2 31 71.0
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 1.9e-06 55.8 30 73.3
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 3.2e-06 55.1 33 66.7
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 3.2e-06 55.1 33 66.7
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 4.2e-06 54.7 30 70.0
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 4.2e-06 54.7 30 73.3
Potri.012G032500 Populus trichocarpa HOM05D003654 ORTHO05D004176 4.2e-06 54.7 35 71.4
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 4.2e-06 54.7 30 70.0
CAN.G1258.3 Capsicum annuum HOM05D003654 ORTHO05D004176 7.2e-06 53.9 38 55.3
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 7.2e-06 53.9 33 72.7
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 7.2e-06 53.9 32 68.8


User provided reference genes

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