Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 2.3e-51 205.3 103 100.0
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 2.5e-34 148.7 106 70.8
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 2.3e-32 142.1 98 72.4
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 6.8e-32 140.6 105 70.5
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.5e-31 139.4 105 69.5
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 1.5e-31 139.4 107 70.1
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 3.4e-31 138.3 110 64.5
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 4.4e-31 137.9 81 82.7
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 9.9e-31 136.7 104 64.4
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 2.2e-30 135.6 104 65.4
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 2.9e-30 135.2 87 72.4
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.4e-29 132.9 101 67.3
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.9e-29 132.5 102 61.8
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.1e-29 131.3 100 65.0
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 4.1e-29 131.3 100 65.0
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 7.1e-29 130.6 103 66.0
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 7.1e-29 130.6 103 66.0
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.1e-29 130.6 100 64.0
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 7.1e-29 130.6 102 61.8
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 7.1e-29 130.6 89 69.7
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 9.2e-29 130.2 103 66.0
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 9.2e-29 130.2 103 65.0
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 1.2e-28 129.8 87 70.1
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.2e-28 129.8 93 68.8
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.6e-28 129.4 83 73.5
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.6e-28 129.4 94 66.0
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 2.1e-28 129.0 82 74.4
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 2.1e-28 129.0 95 67.4
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 2.7e-28 128.6 103 64.1
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 2.7e-28 128.6 79 75.9
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 3.5e-28 128.3 101 65.3
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 3.5e-28 128.3 94 66.0
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 3.5e-28 128.3 99 68.7
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 4.6e-28 127.9 98 62.2
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 4.6e-28 127.9 83 73.5
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 7.8e-28 127.1 96 65.6
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 7.8e-28 127.1 100 66.0
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 1.0e-27 126.7 103 61.2
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 1.3e-27 126.3 95 65.3
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 1.3e-27 126.3 93 66.7
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 1.3e-27 126.3 99 64.6
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 1.3e-27 126.3 96 62.5
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 1.3e-27 126.3 95 69.5
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 1.7e-27 125.9 100 65.0
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 2.3e-27 125.6 81 72.8
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 3.0e-27 125.2 93 67.7
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 3.9e-27 124.8 110 62.7
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 5.1e-27 124.4 80 73.8
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 6.6e-27 124.0 99 62.6
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 1.1e-26 123.2 110 59.1
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 1.5e-26 122.9 90 64.4
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 1.5e-26 122.9 84 67.9
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.5e-26 122.9 106 63.2
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 1.9e-26 122.5 104 60.6
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 1.9e-26 122.5 111 61.3
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 2.5e-26 122.1 89 66.3
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 2.5e-26 122.1 95 67.4
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 4.3e-26 121.3 100 62.0
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 4.3e-26 121.3 80 72.5
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 4.3e-26 121.3 109 62.4
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 4.3e-26 121.3 87 65.5
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 5.6e-26 120.9 86 66.3
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 5.6e-26 120.9 100 63.0
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 7.3e-26 120.6 89 65.2
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 9.5e-26 120.2 89 66.3
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 9.5e-26 120.2 111 60.4
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 1.2e-25 119.8 87 66.7
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 1.2e-25 119.8 99 60.6
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.6e-25 119.4 78 73.1
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.6e-25 119.4 95 64.2
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 2.1e-25 119.0 103 59.2
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 2.8e-25 118.6 79 70.9
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.8e-25 118.6 78 73.1
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 3.6e-25 118.2 79 70.9
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 3.6e-25 118.2 79 70.9
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 3.6e-25 118.2 96 63.5
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.6e-25 118.2 96 63.5
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 3.6e-25 118.2 109 61.5
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 4.7e-25 117.9 100 62.0
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 4.7e-25 117.9 80 68.8
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 4.7e-25 117.9 79 70.9
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 4.7e-25 117.9 95 63.2
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 6.2e-25 117.5 97 63.9
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 6.2e-25 117.5 94 63.8
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.4e-24 116.3 97 61.9
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.4e-24 116.3 87 58.6
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.4e-24 116.3 87 64.4
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 1.4e-24 116.3 97 56.7
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 1.8e-24 115.9 98 56.1
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.8e-24 115.9 85 64.7
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.8e-24 115.9 96 62.5
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.8e-24 115.9 96 62.5
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 3.1e-24 115.2 85 64.7
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 3.1e-24 115.2 87 59.8
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 4.0e-24 114.8 76 73.7
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 5.2e-24 114.4 100 60.0
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 6.8e-24 114.0 80 67.5
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 6.8e-24 114.0 85 63.5
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 6.8e-24 114.0 94 60.6
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 6.8e-24 114.0 79 68.4
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 8.9e-24 113.6 88 60.2
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 8.9e-24 113.6 93 61.3
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 2.0e-23 112.5 103 55.3
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 2.0e-23 112.5 81 65.4
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 2.0e-23 112.5 74 71.6
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 3.4e-23 111.7 80 66.2
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 4.4e-23 111.3 83 60.2
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 5.8e-23 110.9 82 63.4
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.7e-22 109.4 95 52.6
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 1.7e-22 109.4 95 61.1
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 3.8e-22 108.2 88 59.1
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 3.8e-22 108.2 95 54.7
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 6.4e-22 107.5 96 56.2
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.9e-21 105.9 93 59.1
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.4e-21 105.5 71 69.0
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 5.4e-21 104.4 87 64.4
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 9.2e-21 103.6 96 58.3
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.2e-20 103.2 69 69.6
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.2e-20 103.2 69 69.6
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.6e-20 102.8 94 55.3
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 6.0e-20 100.9 82 58.5
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 6.0e-20 100.9 89 56.2
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 7.8e-20 100.5 97 53.6
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.3e-19 99.0 72 65.3
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 3.0e-19 98.6 82 58.5
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 6.6e-19 97.4 80 56.2
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 6.6e-19 97.4 82 57.3
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 1.9e-18 95.9 79 58.2
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 3.3e-18 95.1 82 52.4
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 7.3e-18 94.0 75 61.3
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 7.3e-18 94.0 80 63.8
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 1.3e-17 93.2 76 57.9
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 6.9e-16 87.4 79 50.6
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 6.9e-16 87.4 78 53.8
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 2.0e-15 85.9 74 55.4
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 4.4e-15 84.7 75 64.0
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 4.4e-15 84.7 75 64.0
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.7e-14 82.8 90 52.2
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 8.4e-14 80.5 90 48.9
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 3.2e-13 78.6 73 49.3
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 6.6e-11 70.9 81 48.1
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 6.6e-11 70.9 81 48.1
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 9.6e-10 67.0 93 39.8
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 2.4e-08 62.4 62 53.2


User provided reference genes

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