Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 6.4e-162 573.9 275 100.0
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 7.2e-129 464.2 277 77.6
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 3.6e-128 461.8 277 78.0
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.6e-126 455.7 269 77.7
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 2.6e-126 455.7 236 84.3
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 3.3e-126 455.3 276 77.5
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.4e-126 454.9 269 77.7
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.3e-125 453.4 246 82.9
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.3e-125 453.4 279 74.6
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 8.2e-125 450.7 253 79.1
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 1.1e-124 450.3 275 75.3
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 2.4e-124 449.1 233 84.1
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.4e-124 449.1 233 85.0
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 3.1e-124 448.7 229 86.0
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.1e-124 448.4 276 73.9
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.1e-124 448.4 234 82.9
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 4.1e-124 448.4 233 84.5
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 4.1e-124 448.4 236 82.6
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 9.1e-124 447.2 267 77.2
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.2e-123 446.8 230 83.9
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.0e-123 446.0 278 73.4
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 1.0e-122 443.7 235 81.7
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 1.3e-122 443.4 228 85.5
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 2.2e-122 442.6 228 85.5
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 6.5e-122 441.0 263 76.4
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 8.5e-122 440.7 247 78.1
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 8.5e-122 440.7 255 78.8
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.1e-121 440.3 247 78.1
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.1e-121 440.3 272 75.0
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.9e-121 439.5 274 74.1
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.9e-121 439.5 254 79.5
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.9e-121 439.5 255 78.4
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.5e-121 439.1 255 78.4
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 3.2e-121 438.7 231 83.5
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.2e-121 438.3 255 78.4
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 4.2e-121 438.3 231 82.7
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 5.5e-121 438.0 232 84.5
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 5.5e-121 438.0 228 84.6
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 5.5e-121 438.0 275 74.5
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 7.2e-121 437.6 238 83.6
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 9.4e-121 437.2 245 79.2
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.2e-120 436.8 232 84.5
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 3.6e-120 435.3 254 77.6
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 4.7e-120 434.9 266 74.1
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 6.1e-120 434.5 232 83.2
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 6.1e-120 434.5 232 83.6
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 6.1e-120 434.5 255 78.0
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 8.0e-120 434.1 231 82.7
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 8.0e-120 434.1 235 80.0
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 1.0e-119 433.7 228 84.2
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.8e-119 433.0 255 76.1
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.0e-119 432.2 232 83.2
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 4.0e-119 431.8 263 76.0
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 4.0e-119 431.8 257 77.0
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 4.0e-119 431.8 249 79.5
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 8.8e-119 430.6 250 78.4
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 8.8e-119 430.6 225 84.4
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 8.8e-119 430.6 246 77.2
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.2e-118 430.3 232 80.6
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.2e-118 430.3 232 82.3
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 2.0e-118 429.5 253 75.9
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 3.4e-118 428.7 225 84.9
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.4e-118 428.3 237 79.7
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 4.4e-118 428.3 232 82.3
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 5.7e-118 427.9 232 80.6
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 5.7e-118 427.9 249 77.5
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 5.7e-118 427.9 225 84.0
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 7.5e-118 427.6 253 76.7
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 7.5e-118 427.6 236 80.1
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 7.5e-118 427.6 236 80.1
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 7.5e-118 427.6 249 77.5
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 9.8e-118 427.2 244 77.5
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 9.8e-118 427.2 244 77.5
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 9.8e-118 427.2 232 81.9
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 9.8e-118 427.2 231 81.8
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 1.3e-117 426.8 232 80.2
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.3e-117 426.8 232 80.2
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.3e-117 426.8 230 82.2
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.7e-117 426.4 228 82.5
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 2.2e-117 426.0 232 80.2
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 2.8e-117 425.6 225 84.4
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 2.8e-117 425.6 232 81.5
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 3.7e-117 425.2 236 78.8
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 3.7e-117 425.2 232 82.3
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 4.8e-117 424.9 232 81.5
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 4.8e-117 424.9 257 75.1
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 4.8e-117 424.9 255 75.3
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 6.3e-117 424.5 239 78.7
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 6.3e-117 424.5 232 81.0
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 6.3e-117 424.5 233 82.0
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.1e-116 423.7 232 80.2
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.1e-116 423.7 265 74.0
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.4e-116 423.3 257 73.9
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.4e-116 423.3 228 80.7
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.8e-116 422.9 239 77.8
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 1.8e-116 422.9 232 81.0
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.8e-116 422.9 232 80.6
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.1e-116 421.8 257 75.1
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 4.1e-116 421.8 236 79.7
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 5.4e-116 421.4 232 79.7
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 5.4e-116 421.4 254 76.0
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 7.0e-116 421.0 237 80.6
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 9.1e-116 420.6 225 80.9
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 1.6e-115 419.9 228 80.7
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 1.6e-115 419.9 252 75.4
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 1.6e-115 419.9 242 76.0
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.0e-115 419.5 231 77.9
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 3.5e-115 418.7 250 75.2
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 4.5e-115 418.3 230 78.7
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 5.9e-115 417.9 260 72.7
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 5.9e-115 417.9 250 75.2
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 1.0e-114 417.2 257 72.8
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 3.8e-114 415.2 249 76.7
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 3.8e-114 415.2 232 77.6
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.5e-113 413.3 227 80.2
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.5e-113 413.3 249 75.9
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.5e-113 412.5 259 72.2
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.5e-113 412.5 259 72.2
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 3.2e-113 412.1 250 75.2
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 3.2e-113 412.1 249 75.9
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 4.2e-113 411.8 249 75.9
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 5.5e-113 411.4 250 72.4
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.2e-112 410.2 259 71.8
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 1.6e-112 409.8 232 78.0
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 3.6e-112 408.7 229 77.7
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 3.6e-112 408.7 232 76.7
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 3.6e-112 408.7 234 76.9
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 6.1e-112 407.9 234 75.2
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 8.0e-112 407.5 234 77.4
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.4e-111 406.8 247 72.9
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 1.8e-111 406.4 246 73.6
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.8e-111 406.4 234 76.5
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 5.2e-111 404.8 229 78.6
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 8.8e-111 404.1 238 77.3
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 2.0e-110 402.9 232 77.2
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.4e-110 402.1 225 80.4
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.7e-109 399.8 250 70.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 8.3e-109 397.5 232 73.7
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 9.1e-108 394.0 224 77.7
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.5e-105 386.7 227 74.0
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 2.1e-104 382.9 235 71.9
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 4.0e-103 378.6 231 72.7
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.4e-100 370.2 213 79.3
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 2.8e-96 355.9 234 68.8
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 8.0e-96 354.4 227 69.2
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 1.0e-95 354.0 225 68.4
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.4e-95 353.6 231 68.4
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 1.4e-95 353.6 223 69.5
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.3e-95 352.8 230 68.3
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.5e-94 350.1 244 66.4
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.3e-89 332.0 269 61.3
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 2.3e-87 326.2 227 67.0
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.6e-83 313.5 166 84.3
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.5e-81 307.0 156 85.3
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 9.5e-81 304.3 157 84.1
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 2.4e-63 246.5 159 69.2
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 6.4e-53 211.8 218 46.8
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 5.1e-50 202.2 206 53.4
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.1e-49 201.1 232 44.4
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 5.1e-42 175.6 96 80.2
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 1.3e-32 144.4 107 65.4
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 7.2e-28 128.6 116 54.3
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.3e-24 117.9 149 45.0
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 4.5e-14 82.8 51 62.7
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 6.5e-13 79.0 67 55.2


User provided reference genes

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