Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 3.9e-117 424.9 219 100.0
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 1.2e-70 270.4 230 62.2
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 3.0e-69 265.8 220 62.7
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 5.1e-69 265.0 225 62.2
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 5.1e-69 265.0 222 63.5
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 6.7e-69 264.6 215 64.2
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 1.1e-68 263.8 215 63.7
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 1.9e-68 263.1 212 64.2
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 7.4e-68 261.2 212 63.7
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 4.8e-67 258.5 223 62.8
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 4.8e-67 258.5 223 62.8
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 2.0e-65 253.1 216 59.7
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 2.6e-65 252.7 214 62.6
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 2.6e-65 252.7 228 61.0
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 2.2e-64 249.6 229 57.6
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 2.9e-64 249.2 218 57.8
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 3.8e-64 248.8 218 57.3
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 3.8e-64 248.8 217 64.1
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 1.1e-63 247.3 225 57.3
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 1.4e-63 246.9 222 58.1
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 1.9e-63 246.5 218 59.6
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 4.2e-63 245.4 230 57.4
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 1.6e-62 243.4 217 61.3
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 2.7e-62 242.7 219 57.5
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 2.7e-62 242.7 223 58.3
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 3.5e-62 242.3 225 58.7
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 3.5e-62 242.3 226 56.2
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 3.5e-62 242.3 220 56.8
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 3.5e-62 242.3 217 62.7
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 3.5e-62 242.3 215 59.1
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 4.6e-62 241.9 222 59.9
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 7.9e-62 241.1 219 56.6
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 7.9e-62 241.1 211 63.0
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 7.9e-62 241.1 219 58.9
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.0e-61 240.7 233 56.7
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.0e-61 240.7 226 55.8
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 1.3e-61 240.4 212 58.0
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 2.3e-61 239.6 219 58.4
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 5.1e-61 238.4 222 56.3
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 6.7e-61 238.0 219 57.1
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 6.7e-61 238.0 215 57.7
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 8.7e-61 237.7 214 61.2
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.1e-60 237.3 217 61.3
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 1.9e-60 236.5 214 61.2
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 9.6e-60 234.2 221 56.6
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 9.6e-60 234.2 221 57.9
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 2.1e-59 233.0 215 56.3
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 2.1e-59 233.0 219 55.7
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.8e-59 232.6 219 55.3
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 3.7e-59 232.3 219 54.8
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 4.8e-59 231.9 219 55.3
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 1.4e-58 230.3 227 54.2
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 1.4e-58 230.3 213 56.8
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 1.4e-58 230.3 213 56.8
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 2.4e-58 229.6 233 53.2
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 2.4e-58 229.6 238 53.8
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 3.1e-58 229.2 221 54.8
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 4.1e-58 228.8 218 56.0
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 6.9e-58 228.0 233 54.5
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 6.9e-58 228.0 218 53.7
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 6.9e-58 228.0 199 61.8
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 9.0e-58 227.6 213 54.0
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 9.0e-58 227.6 220 55.5
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 1.2e-57 227.3 221 56.1
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 1.2e-57 227.3 221 56.1
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 1.2e-57 227.3 229 54.6
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 1.5e-57 226.9 213 56.3
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 2.6e-57 226.1 206 55.8
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 2.6e-57 226.1 218 52.3
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 4.5e-57 225.3 213 55.4
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 4.5e-57 225.3 213 55.4
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 1.7e-56 223.4 231 54.5
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 2.9e-56 222.6 232 54.3
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 1.4e-55 220.3 213 52.1
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.9e-55 219.9 219 54.8
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 2.5e-55 219.5 211 54.0
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 2.5e-55 219.5 213 54.5
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 2.5e-55 219.5 218 54.6
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 3.2e-55 219.2 215 55.8
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 4.2e-55 218.8 213 54.0
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 2.1e-54 216.5 206 55.3
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 3.6e-54 215.7 205 53.7
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 3.6e-54 215.7 213 53.1
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 4.6e-54 215.3 215 52.6
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 4.6e-54 215.3 215 53.5
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 2.3e-53 213.0 212 54.7
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 2.3e-53 213.0 225 50.2
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 8.7e-53 211.1 225 49.3
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 1.9e-52 209.9 219 51.6
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 4.3e-52 208.8 218 50.9
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 4.3e-52 208.8 220 51.8
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 2.2e-51 206.5 219 51.1
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 4.8e-51 205.3 220 50.9
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 4.8e-51 205.3 220 50.9
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 4.8e-51 205.3 220 50.9
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 1.1e-50 204.1 204 51.5
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 1.4e-50 203.8 225 49.8
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 3.1e-50 202.6 259 45.2
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 6.9e-50 201.4 218 52.8
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 9.1e-50 201.1 214 50.5
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 1.2e-49 200.7 215 50.7
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 1.2e-49 200.7 220 52.3
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 4.5e-49 198.7 224 50.9
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 5.9e-49 198.4 226 48.7
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 4.2e-47 192.2 216 47.7
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 7.2e-47 191.4 235 46.4
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 7.2e-47 191.4 226 47.3
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 1.2e-46 190.7 193 55.4
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 2.7e-46 189.5 218 49.1
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 9.7e-44 181.0 194 50.5
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 4.8e-43 178.7 221 46.2
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 9.1e-42 174.5 171 53.2
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 5.0e-40 168.7 231 41.6
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 1.9e-39 166.8 214 45.8
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 3.2e-39 166.0 224 42.0
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 1.0e-37 161.0 223 40.4
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 1.4e-37 160.6 219 41.6
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 1.2e-28 131.0 111 60.4
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 2.0e-28 130.2 221 38.5
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 8.2e-27 124.8 101 62.4
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.1e-23 114.4 134 48.5
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 4.2e-23 112.5 138 47.8
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 5.7e-20 102.1 95 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 9.8e-20 101.3 211 33.6
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 1.0e-13 81.3 124 37.1
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 1.4e-13 80.9 101 45.5
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 3.0e-13 79.7 182 30.2
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 5.7e-12 75.5 215 27.4
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 1.1e-10 71.2 73 52.1
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 3.8e-08 62.8 74 48.6
FvH4_4g31760 Fragaria vesca HOM05D001741 ORTHO05D002196 1.6e-06 57.4 129 27.9
FAN12G1673 Fragaria x ananassa HOM05D001741 ORTHO05D002196 1.6e-06 57.4 129 27.9
FvH4_4g31780 Fragaria vesca HOM05D001741 ORTHO05D002196 6.1e-06 55.5 130 30.0
FAN17G1528 Fragaria x ananassa HOM05D001741 ORTHO05D002196 6.1e-06 55.5 130 30.0


User provided reference genes

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