Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 5.1e-60 234.6 150 100.0
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 2.0e-48 196.1 150 85.3
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 3.8e-47 191.8 150 84.0
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 3.8e-47 191.8 149 83.2
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 3.8e-47 191.8 149 84.6
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 6.4e-47 191.0 148 85.1
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 2.4e-46 189.1 150 81.3
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 2.4e-46 189.1 149 83.2
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 4.2e-46 188.3 149 83.9
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 7.1e-46 187.6 149 81.9
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 7.1e-46 187.6 149 82.6
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 1.6e-45 186.4 149 81.2
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 2.1e-45 186.0 149 82.6
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 2.7e-45 185.7 149 81.2
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 4.6e-45 184.9 149 80.5
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 6.0e-45 184.5 149 81.9
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 6.0e-45 184.5 149 80.5
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 7.8e-45 184.1 148 81.1
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 7.8e-45 184.1 149 80.5
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 1.3e-44 183.3 149 81.9
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 2.3e-44 182.6 149 79.9
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 2.3e-44 182.6 149 79.9
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.3e-44 182.6 149 79.9
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.3e-44 182.6 149 79.9
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 2.3e-44 182.6 149 80.5
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 2.3e-44 182.6 148 80.4
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 2.3e-44 182.6 149 79.9
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 3.0e-44 182.2 149 80.5
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 3.0e-44 182.2 149 80.5
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 3.0e-44 182.2 149 80.5
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 3.9e-44 181.8 149 80.5
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 6.6e-44 181.0 149 77.9
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 8.7e-44 180.6 149 79.9
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 8.7e-44 180.6 149 79.9
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 8.7e-44 180.6 149 79.9
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 8.7e-44 180.6 149 80.5
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 8.7e-44 180.6 149 79.9
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 1.1e-43 180.3 149 77.9
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 1.9e-43 179.5 149 79.9
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 1.9e-43 179.5 149 79.2
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 1.9e-43 179.5 149 79.9
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.9e-43 179.5 149 78.5
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 1.9e-43 179.5 149 79.2
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 2.5e-43 179.1 149 78.5
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 2.5e-43 179.1 149 78.5
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 2.5e-43 179.1 144 80.6
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 2.5e-43 179.1 149 78.5
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 3.3e-43 178.7 149 79.2
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 3.3e-43 178.7 142 83.8
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 3.3e-43 178.7 149 79.9
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 3.3e-43 178.7 149 79.9
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 4.3e-43 178.3 149 79.2
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 9.6e-43 177.2 149 77.9
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 9.6e-43 177.2 146 80.1
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.1e-42 176.0 149 77.9
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 2.1e-42 176.0 149 79.2
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 3.6e-42 175.3 149 77.9
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 3.6e-42 175.3 149 77.9
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 3.6e-42 175.3 149 77.9
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 3.6e-42 175.3 149 79.2
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 4.8e-42 174.9 149 77.9
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 6.2e-42 174.5 149 75.8
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 6.2e-42 174.5 149 77.2
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 1.4e-41 173.3 149 76.5
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 1.8e-41 172.9 149 75.8
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 2.4e-41 172.6 149 77.9
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 2.4e-41 172.6 149 77.2
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 2.4e-41 172.6 149 75.2
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 3.1e-41 172.2 149 75.2
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 3.1e-41 172.2 149 75.2
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 1.2e-40 170.2 149 75.2
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 1.5e-40 169.9 149 75.8
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 1.5e-40 169.9 149 77.2
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 1.5e-40 169.9 149 76.5
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 1.5e-40 169.9 149 75.8
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 2.0e-40 169.5 149 76.5
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 2.6e-40 169.1 149 76.5
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 4.5e-40 168.3 149 76.5
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 5.8e-40 167.9 149 76.5
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 5.8e-40 167.9 149 74.5
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 5.8e-40 167.9 149 74.5
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 7.6e-40 167.5 149 75.2
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.3e-39 166.8 149 73.8
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 2.9e-39 165.6 145 75.9
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 1.1e-38 163.7 149 74.5
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 1.9e-38 162.9 149 71.8
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 2.4e-38 162.5 149 74.5
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 2.4e-38 162.5 149 74.5
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 3.2e-38 162.2 149 71.8
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 2.1e-37 159.5 149 70.5
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 2.1e-37 159.5 149 73.2
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 2.1e-37 159.5 149 72.5
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 2.7e-37 159.1 149 69.8
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 2.7e-37 159.1 149 69.8
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 4.6e-37 158.3 149 75.2
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 1.8e-36 156.4 149 72.5
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 3.0e-36 155.6 149 70.5
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 4.3e-35 151.8 149 67.8
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 5.6e-35 151.4 149 71.8
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 5.6e-35 151.4 129 78.3
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 5.6e-35 151.4 149 71.1
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 1.6e-34 149.8 149 69.1
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 4.8e-34 148.3 149 69.1
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 2.6e-32 142.5 149 64.4
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 1.7e-31 139.8 149 65.8
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 6.0e-29 131.3 149 65.8
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 4.8e-26 121.7 149 62.4
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 6.2e-26 121.3 146 61.0
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 1.6e-21 106.7 149 56.4
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 3.5e-21 105.5 59 84.7
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 2.3e-20 102.8 147 55.1
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 3.9e-20 102.1 127 52.0
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 1.3e-18 97.1 146 53.4
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 4.8e-18 95.1 140 56.4
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 1.8e-17 93.2 110 58.2
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 1.5e-16 90.1 146 52.7
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.9e-15 85.9 97 67.0
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 5.5e-14 81.6 46 78.3
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 7.9e-13 77.8 148 47.3
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 5.9e-08 61.6 103 49.5
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 3.2e-06 55.8 59 45.8
Nitab4.5_0006079g0040 Nicotiana tabacum HOM05D006349 ORTHO05D008205 5.5e-06 55.1 45 75.6


User provided reference genes

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