Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P411T44 Lonicera japonica HOM05D004529 ORTHO05D005884 1.5e-189 666.0 332 100.0
Lj9P233T36 Lonicera japonica HOM05D004529 ORTHO05D005884 1.2e-154 550.1 297 91.9
Dinv11730 Davidia involucrata HOM05D004529 ORTHO05D005884 1.5e-75 287.3 380 46.3
Dinv06405 Davidia involucrata HOM05D004529 ORTHO05D005884 7.2e-75 285.0 380 46.3
CSS0033935 Camellia sinensis var. sinensis HOM05D004529 ORTHO05D005884 5.2e-73 278.9 385 45.2
Lj5A167G40 Lonicera japonica HOM05D004529 ORTHO05D005884 1.5e-67 260.8 334 45.2
TAR371G0876 Trochodendron aralioides HOM05D004529 ORTHO05D005884 9.5e-67 258.1 355 44.5
Actinidia34683 Actinidia chinensis HOM05D004529 ORTHO05D005884 2.1e-66 256.9 375 42.4
Atru.chr9.71 Acer truncatum HOM05D004529 ORTHO05D005884 1.2e-64 251.1 335 42.7
Duzib128G0682 Durio zibethinus HOM05D004529 ORTHO05D005884 1.5e-64 250.8 379 39.3
Duzib177G0816 Durio zibethinus HOM05D004529 ORTHO05D005884 2.4e-62 243.4 371 40.2
Thecc.05G197800 Theobroma cacao HOM05D004529 ORTHO05D005884 1.0e-60 238.0 371 38.0
Haze_18337 Corylus avellana HOM05D004529 ORTHO05D005884 1.5e-59 234.2 352 42.0
Rhsim08G0124700 Rhododendron simsii HOM05D004529 ORTHO05D005884 1.9e-59 233.8 352 43.5
vmacro17741 Vaccinium macrocarpon HOM05D004529 ORTHO05D005884 1.2e-58 231.1 376 39.4
Prupe.5G240600 Prunus persica HOM05D004529 ORTHO05D005884 4.7e-58 229.2 355 41.1
TAR629G0199 Trochodendron aralioides HOM05D004529 ORTHO05D005884 4.7e-58 229.2 345 40.9
QL10p034152 Quercus lobata HOM05D004529 ORTHO05D005884 1.4e-57 227.6 346 42.2
TAR629G2105 Trochodendron aralioides HOM05D004529 ORTHO05D005884 1.4e-57 227.6 345 41.2
COL.COLO4_08720 Corchorus olitorius HOM05D004529 ORTHO05D005884 2.3e-57 226.9 372 38.4
Glyma.09G164300 Glycine max HOM05D004529 ORTHO05D005884 2.0e-56 223.8 361 39.3
MD14G1242900 Malus domestica HOM05D004529 ORTHO05D005884 3.4e-56 223.0 373 39.7
MD06G1235900 Malus domestica HOM05D004529 ORTHO05D005884 2.2e-55 220.3 354 39.3
Ciclev10018551m.g Citrus clementina HOM05D004529 ORTHO05D005884 3.2e-54 216.5 343 39.1
Potri.017G152601 Populus trichocarpa HOM05D004529 ORTHO05D005884 4.1e-54 216.1 329 42.2
Lalb_Chr22g0354001 Lupinus albus HOM05D004529 ORTHO05D005884 3.5e-53 213.0 361 40.7
Potri.004G068700 Populus trichocarpa HOM05D004529 ORTHO05D005884 1.0e-52 211.5 346 37.6
Glyma.16G212800 Glycine max HOM05D004529 ORTHO05D005884 1.3e-52 211.1 361 38.2
Lalb_Chr24g0398601 Lupinus albus HOM05D004529 ORTHO05D005884 3.0e-52 209.9 365 40.0
Sabra17G0125600 Salix brachista HOM05D004529 ORTHO05D005884 3.9e-52 209.5 352 41.2
VMungo0464G1978 Vigna mungo HOM05D004529 ORTHO05D005884 5.0e-52 209.1 348 39.9
FAN08G2030 Fragaria x ananassa HOM05D004529 ORTHO05D005884 6.6e-52 208.8 343 37.6
Sabra04G0046400 Salix brachista HOM05D004529 ORTHO05D005884 6.6e-52 208.8 323 41.2
VMungo0464G0747 Vigna mungo HOM05D004529 ORTHO05D005884 1.5e-51 207.6 356 39.3
Phvul.004G138850 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 1.9e-51 207.2 359 39.0
Phvul.L001671 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 1.9e-51 207.2 359 39.0
FAN13G3043 Fragaria x ananassa HOM05D004529 ORTHO05D005884 2.5e-51 206.8 343 37.0
RcHm_v2.0_Chr7g0177561 Rosa chinensis HOM05D004529 ORTHO05D005884 3.3e-51 206.5 343 38.5
MBI06_g11152_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 7.3e-51 205.3 362 37.8
FAN18G3802 Fragaria x ananassa HOM05D004529 ORTHO05D005884 9.5e-51 204.9 343 36.4
FAN04G1556 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.2e-50 204.5 344 36.3
FvH4_5g18040 Fragaria vesca HOM05D004529 ORTHO05D005884 1.6e-50 204.1 343 36.4
Lalb_Chr14g0370211 Lupinus albus HOM05D004529 ORTHO05D005884 8.0e-50 201.8 361 40.2
RcHm_v2.0_Chr7g0177041 Rosa chinensis HOM05D004529 ORTHO05D005884 1.1e-49 201.4 341 39.0
TWI81G0141 Tripterygium wilfordii HOM05D004529 ORTHO05D005884 1.1e-49 201.4 345 39.1
Nitab4.5_0003040g0050 Nicotiana tabacum HOM05D004529 ORTHO05D005884 3.1e-49 199.9 263 43.0
Gohir.D13G093200 Gossypium hirsutum HOM05D004529 ORTHO05D005884 6.8e-49 198.7 343 37.0
GSVIVG01024252001 Vitis vinifera HOM05D004529 ORTHO05D005884 6.8e-49 198.7 347 38.6
CANSAT64G3027 Cannabis sativa HOM05D004529 ORTHO05D005884 8.9e-49 198.4 349 39.0
Gorai.013G179100 Gossypium raimondii HOM05D004529 ORTHO05D005884 1.2e-48 198.0 314 38.9
MBI03_g26653_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 1.2e-48 198.0 352 39.2
CAN.G929.20 Capsicum annuum HOM05D004529 ORTHO05D005884 1.5e-48 197.6 381 35.7
Peaxi162Scf00171g00234 Petunia axillaris HOM05D004529 ORTHO05D005884 1.5e-48 197.6 301 40.2
PGSC0003DMG400010150 Solanum tuberosum HOM05D004529 ORTHO05D005884 1.5e-48 197.6 388 37.4
Solyc03g098630.4 Solanum lycopersicum HOM05D004529 ORTHO05D005884 2.6e-48 196.8 384 36.5
Gohir.A13G153800 Gossypium hirsutum HOM05D004529 ORTHO05D005884 4.4e-48 196.1 312 39.7
Sopen03g029340 Solanum pennellii HOM05D004529 ORTHO05D005884 5.8e-48 195.7 385 36.4
Nitab4.5_0000782g0040 Nicotiana tabacum HOM05D004529 ORTHO05D005884 1.7e-47 194.1 300 38.7
Medtr6g077930 Medicago truncatula HOM05D004529 ORTHO05D005884 2.2e-47 193.7 315 38.4
Cpa.g.sc168.9 Carica papaya HOM05D004529 ORTHO05D005884 3.7e-47 193.0 338 36.1
Gohir.D13G158400 Gossypium hirsutum HOM05D004529 ORTHO05D005884 4.9e-47 192.6 314 38.2
DCAR_011683 Daucus carota HOM05D004529 ORTHO05D005884 1.1e-46 191.4 344 38.7
Gohir.A13G089790 Gossypium hirsutum HOM05D004529 ORTHO05D005884 1.1e-46 191.4 227 43.6
Psat0s1805g0040 Pisum sativum HOM05D004529 ORTHO05D005884 2.1e-45 187.2 336 38.7
Ca_27163_v3 Cicer arietinum L. HOM05D004529 ORTHO05D005884 7.8e-45 185.3 338 37.3
Nitab4.5_0000339g0110 Nicotiana tabacum HOM05D004529 ORTHO05D005884 7.8e-45 185.3 265 43.0
Nitab4.5_0000033g0370 Nicotiana tabacum HOM05D004529 ORTHO05D005884 1.7e-44 184.1 265 42.6
PGR083G0180 Punica granatum HOM05D004529 ORTHO05D005884 1.7e-44 184.1 319 39.2
Eucgr.H00653 Eucalyptus grandis HOM05D004529 ORTHO05D005884 5.0e-44 182.6 244 42.6
arahy.Tifrunner.gnm1.ann1.FEKM9F Arachis hypogaea HOM05D004529 ORTHO05D005884 4.3e-43 179.5 324 39.2
FvH4_5g18430 Fragaria vesca HOM05D004529 ORTHO05D005884 1.2e-42 177.9 237 45.6
FAN08G1550 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.2e-42 177.9 237 45.1
FAN18G1654 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.2e-42 177.9 237 45.6
Lj2g0011080 Lotus japonicus HOM05D004529 ORTHO05D005884 1.2e-42 177.9 339 37.5
MBI02_g39755_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 2.1e-42 177.2 334 35.3
arahy.Tifrunner.gnm1.ann1.1UV8VN Arachis hypogaea HOM05D004529 ORTHO05D005884 3.6e-42 176.4 324 38.6
Sed0013312 Sechium edule HOM05D004529 ORTHO05D005884 1.1e-41 174.9 345 34.2
FAN13G2071 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.1e-41 173.3 237 45.1
ATR0618G236 Amborella trichopoda HOM05D004529 ORTHO05D005884 4.4e-40 169.5 389 33.4
ClCG01G014790 Citrullus lanatus HOM05D004529 ORTHO05D005884 5.8e-40 169.1 351 35.9
TAR627G0950 Trochodendron aralioides HOM05D004529 ORTHO05D005884 8.3e-39 165.2 354 35.6
CAN.G65.75 Capsicum annuum HOM05D004529 ORTHO05D005884 1.1e-38 164.9 277 39.0
Peaxi162Scf00643g00541 Petunia axillaris HOM05D004529 ORTHO05D005884 2.4e-38 163.7 205 46.3
MELO3C002172.2 Cucumis melo HOM05D004529 ORTHO05D005884 1.7e-36 157.5 350 34.0
CsaV3_1G007540 Cucumis sativus L. HOM05D004529 ORTHO05D005884 1.1e-35 154.8 367 33.2
CDE08G0908 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 2.5e-35 153.7 218 42.7
Zm00001eb198730 Zea mays HOM05D004529 ORTHO05D005884 3.3e-35 153.3 261 35.2
PSO782G2500 Papaver somniferum HOM05D004529 ORTHO05D005884 1.6e-34 151.0 336 35.1
PSO063G4972 Papaver somniferum HOM05D004529 ORTHO05D005884 1.1e-33 148.3 339 33.6
PSO675G1505 Papaver somniferum HOM05D004529 ORTHO05D005884 8.9e-33 145.2 333 32.1
Prupe.3G227600 Prunus persica HOM05D004529 ORTHO05D005884 8.9e-33 145.2 323 33.1
GSVIVG01029323001 Vitis vinifera HOM05D004529 ORTHO05D005884 1.2e-32 144.8 310 35.2
Cpa.g.sc34.61 Carica papaya HOM05D040545 ORTHO05D005884 2.0e-32 144.1 324 34.0
MD17G1087100 Malus domestica HOM05D004529 ORTHO05D005884 3.4e-32 143.3 323 31.9
PSO541G4256 Papaver somniferum HOM05D004529 ORTHO05D005884 4.4e-32 142.9 337 32.0
HPP92_022512 Vanilla planifolia HOM05D004529 ORTHO05D001371 5.8e-32 142.5 360 32.2
Thecc.02G167600 Theobroma cacao HOM05D004529 ORTHO05D005884 1.3e-31 141.4 333 31.5
CDE05G3012 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 2.2e-31 140.6 289 35.6
Phvul.004G138800 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 2.9e-31 140.2 239 40.2
Zm00001eb271850 Zea mays HOM05D004529 ORTHO05D005884 8.4e-31 138.7 218 38.5
RcHm_v2.0_Chr1g0318131 Rosa chinensis HOM05D004529 ORTHO05D005884 1.2e-29 134.8 217 38.2
Haze_13045 Corylus avellana HOM05D004529 ORTHO05D005884 3.5e-29 133.3 339 33.0
CDE02G2928 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 4.6e-29 132.9 201 38.3
Hund01213 Selenicereus undatus HOM05D004529 ORTHO05D005884 6.0e-29 132.5 223 37.2
TPR.G19877 Trifolium pratense HOM05D004529 ORTHO05D005884 3.9e-28 129.8 162 45.1
Cfa014497 Carpinus fangiana HOM05D004529 ORTHO05D005884 6.6e-28 129.0 339 32.2
Cfa014498 Carpinus fangiana HOM05D004529 ORTHO05D005884 6.6e-28 129.0 339 32.2
Os06g0729500 Oryza sativa ssp. japonica HOM05D004529 ORTHO05D005884 1.1e-27 128.3 218 38.5
Sc21g0002170 Simmondsia chinensis HOM05D004529 ORTHO05D005884 2.1e-26 124.0 327 28.1
Sopen06g028620 Solanum pennellii HOM05D004529 ORTHO05D005884 2.1e-26 124.0 271 32.8
FAN04G0338 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.6e-26 123.2 237 38.0
FAN09G3058 Fragaria x ananassa HOM05D004529 ORTHO05D005884 4.7e-26 122.9 203 37.4
FAN02G0641 Fragaria x ananassa HOM05D004529 ORTHO05D005884 2.4e-25 120.6 207 36.7
Atru.chr6.3093 Acer truncatum HOM05D004529 ORTHO05D005884 5.3e-25 119.4 329 29.2
Nitab4.5_0011808g0010 Nicotiana tabacum HOM05D004529 ORTHO05D005884 5.3e-25 119.4 160 40.6
Sopen06g028600 Solanum pennellii HOM05D004529 ORTHO05D005884 5.3e-25 119.4 271 33.6
RcHm_v2.0_Chr2g0161201 Rosa chinensis HOM05D004529 ORTHO05D005884 3.4e-24 116.7 203 36.5
Dinv02574 Davidia involucrata HOM05D004529 ORTHO05D005884 4.4e-24 116.3 347 29.7
FAN05G1920 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.3e-23 114.8 205 35.6
FvH4_6g44320 Fragaria vesca HOM05D004529 ORTHO05D005884 2.2e-23 114.0 205 36.6
Cpa.g.sc34.58 Carica papaya HOM05D004529 ORTHO05D005884 4.2e-22 109.8 133 42.1
PGSC0003DMG400045819 Solanum tuberosum HOM05D004529 ORTHO05D005884 2.7e-21 107.1 187 37.4
FAN14G2835 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.5e-21 106.7 205 35.6
Potri.019G119100 Populus trichocarpa HOM05D004529 ORTHO05D005884 1.3e-20 104.8 186 38.2
Potri.013G149400 Populus trichocarpa HOM05D004529 ORTHO05D005884 1.1e-19 101.7 317 29.3
Sabra19G0119700 Salix brachista HOM05D004529 ORTHO05D005884 9.6e-19 98.6 183 35.0
Sabra19G0134300 Salix brachista HOM05D004529 ORTHO05D005884 2.8e-18 97.1 183 34.4
Sabra19G0119900 Salix brachista HOM05D004529 ORTHO05D005884 4.8e-18 96.3 183 36.1
Sabra19G0134100 Salix brachista HOM05D004529 ORTHO05D005884 1.1e-17 95.1 183 36.1
Mapoly0005s0070 Marchantia polymorpha HOM05D004529 ORTHO05D000444 1.5e-16 91.3 257 29.2
Dinv02572 Davidia involucrata HOM05D004529 ORTHO05D005884 1.8e-12 77.8 205 30.2
Ciclev10018263m.g Citrus clementina HOM05D004529 ORTHO05D005884 2.1e-10 70.9 199 31.2
Zm00001eb261400 Zea mays HOM05D004529 ORTHO05D005884 1.5e-08 64.7 143 31.5


User provided reference genes

Program Settings