Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 6.6e-41 170.2 85 100.0
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 3.8e-20 101.3 75 72.0
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 1.4e-19 99.4 77 70.1
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 7.1e-19 97.1 77 66.2
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 1.0e-17 93.2 80 63.8
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 3.0e-17 91.7 75 64.0
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 8.7e-17 90.1 72 69.4
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 1.5e-16 89.4 71 66.2
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 4.8e-15 84.3 75 64.0
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 8.2e-15 83.6 80 57.5
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 8.2e-15 83.6 70 62.9
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 8.2e-15 83.6 80 57.5
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 1.1e-14 83.2 72 66.7
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 1.8e-14 82.4 80 56.2
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 9.0e-14 80.1 73 57.5
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 3.4e-13 78.2 71 60.6
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 4.5e-13 77.8 68 57.4
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 5.9e-13 77.4 64 60.9
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 7.7e-13 77.0 75 57.3
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 1.3e-12 76.3 65 61.5
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 5.0e-12 74.3 72 56.9
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 5.0e-12 74.3 67 58.2
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 8.5e-12 73.6 74 50.0
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 8.5e-12 73.6 59 64.4
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 1.1e-11 73.2 70 54.3
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 1.1e-11 73.2 69 60.9
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 1.1e-11 73.2 75 54.7
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 1.9e-11 72.4 81 51.9
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 4.2e-11 71.2 78 52.6
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 5.5e-11 70.9 55 63.6
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 9.4e-11 70.1 73 53.4
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 9.4e-11 70.1 65 56.9
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 1.2e-10 69.7 71 57.7
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 1.2e-10 69.7 73 53.4
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 1.6e-10 69.3 67 58.2
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 1.6e-10 69.3 53 64.2
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 1.6e-10 69.3 79 54.4
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.1e-10 68.9 73 56.2
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.1e-10 68.9 53 69.8
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 2.1e-10 68.9 69 56.5
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 2.1e-10 68.9 50 70.0
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 2.7e-10 68.6 66 51.5
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 4.6e-10 67.8 69 59.4
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 4.6e-10 67.8 73 53.4
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 4.6e-10 67.8 75 52.0
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 6.1e-10 67.4 71 53.5
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 7.9e-10 67.0 77 51.9
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 7.9e-10 67.0 71 50.7
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 1.0e-09 66.6 57 64.9
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 1.4e-09 66.2 54 64.8
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 1.8e-09 65.9 52 65.4
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 3.9e-09 64.7 60 60.0
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 5.1e-09 64.3 48 66.7
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 5.1e-09 64.3 73 56.2
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 6.7e-09 63.9 70 52.9
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 6.7e-09 63.9 56 60.7
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 6.7e-09 63.9 76 55.3
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 6.7e-09 63.9 56 60.7
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.5e-08 62.8 44 70.5
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 4.3e-08 61.2 70 51.4
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 5.7e-08 60.8 64 57.8
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.7e-08 60.8 64 57.8
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.7e-08 60.8 64 57.8
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.7e-08 60.8 64 57.8
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 7.4e-08 60.5 77 53.2
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 7.4e-08 60.5 46 69.6
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 1.3e-07 59.7 70 47.1
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.7e-07 59.3 48 58.3
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 2.2e-07 58.9 69 52.2
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.8e-07 58.5 42 71.4
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 4.8e-07 57.8 54 55.6
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 4.8e-07 57.8 54 55.6
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 4.8e-07 57.8 54 55.6
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 4.8e-07 57.8 49 59.2
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 4.8e-07 57.8 69 49.3
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 1.1e-06 56.6 45 66.7
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.1e-06 56.6 54 51.9
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-06 55.8 61 45.9
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 3.1e-06 55.1 45 64.4
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 3.1e-06 55.1 45 64.4
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 3.1e-06 55.1 45 64.4
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 4.1e-06 54.7 44 65.9
Oeu006910.1 Olea europaea HOM05D007325 ORTHO05D009251 5.3e-06 54.3 72 44.4
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 6.9e-06 53.9 41 61.0
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 9.1e-06 53.5 43 62.8


User provided reference genes

Program Settings