Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P233T36 Lonicera japonica HOM05D004529 ORTHO05D005884 2.6e-169 598.6 297 100.0
Lj9P411T44 Lonicera japonica HOM05D004529 ORTHO05D005884 4.8e-155 551.2 297 91.9
Dinv06405 Davidia involucrata HOM05D004529 ORTHO05D005884 7.7e-68 261.5 314 48.4
Dinv11730 Davidia involucrata HOM05D004529 ORTHO05D005884 1.7e-67 260.4 330 47.3
CSS0033935 Camellia sinensis var. sinensis HOM05D004529 ORTHO05D005884 1.1e-66 257.7 311 49.2
Lj5A167G40 Lonicera japonica HOM05D004529 ORTHO05D005884 2.1e-65 253.4 266 52.3
Actinidia34683 Actinidia chinensis HOM05D004529 ORTHO05D005884 8.5e-59 231.5 334 43.1
TAR371G0876 Trochodendron aralioides HOM05D004529 ORTHO05D005884 3.6e-57 226.1 323 42.7
Atru.chr9.71 Acer truncatum HOM05D004529 ORTHO05D005884 3.9e-56 222.6 306 41.5
Rhsim08G0124700 Rhododendron simsii HOM05D004529 ORTHO05D005884 1.3e-54 217.6 326 44.2
Duzib128G0682 Durio zibethinus HOM05D004529 ORTHO05D005884 2.2e-54 216.9 323 39.0
TAR629G2105 Trochodendron aralioides HOM05D004529 ORTHO05D005884 1.1e-53 214.5 321 41.1
TAR629G0199 Trochodendron aralioides HOM05D004529 ORTHO05D005884 1.4e-53 214.2 321 40.8
vmacro17741 Vaccinium macrocarpon HOM05D004529 ORTHO05D005884 5.3e-53 212.2 313 42.2
Haze_18337 Corylus avellana HOM05D004529 ORTHO05D005884 3.8e-51 206.1 328 39.3
Duzib177G0816 Durio zibethinus HOM05D004529 ORTHO05D005884 3.8e-51 206.1 323 39.6
Thecc.05G197800 Theobroma cacao HOM05D004529 ORTHO05D005884 6.5e-51 205.3 329 37.1
Prupe.5G240600 Prunus persica HOM05D004529 ORTHO05D005884 1.1e-50 204.5 327 40.7
Glyma.09G164300 Glycine max HOM05D004529 ORTHO05D005884 1.2e-49 201.1 317 40.1
QL10p034152 Quercus lobata HOM05D004529 ORTHO05D005884 1.2e-49 201.1 321 40.5
Lalb_Chr24g0398601 Lupinus albus HOM05D004529 ORTHO05D005884 6.1e-49 198.7 284 44.4
MD14G1242900 Malus domestica HOM05D004529 ORTHO05D005884 8.0e-49 198.4 271 43.5
VMungo0464G0747 Vigna mungo HOM05D004529 ORTHO05D005884 1.8e-48 197.2 220 49.5
COL.COLO4_08720 Corchorus olitorius HOM05D004529 ORTHO05D005884 3.0e-48 196.4 337 38.3
MD06G1235900 Malus domestica HOM05D004529 ORTHO05D005884 3.0e-48 196.4 270 41.9
Lalb_Chr22g0354001 Lupinus albus HOM05D004529 ORTHO05D005884 6.7e-48 195.3 287 42.9
Phvul.004G138850 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 2.0e-47 193.7 244 45.5
Phvul.L001671 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 2.0e-47 193.7 244 45.5
VMungo0464G1978 Vigna mungo HOM05D004529 ORTHO05D005884 2.0e-47 193.7 292 41.8
Glyma.16G212800 Glycine max HOM05D004529 ORTHO05D005884 7.4e-47 191.8 287 41.5
Nitab4.5_0003040g0050 Nicotiana tabacum HOM05D004529 ORTHO05D005884 7.4e-47 191.8 266 41.7
Gohir.D13G093200 Gossypium hirsutum HOM05D004529 ORTHO05D005884 1.3e-46 191.0 323 36.2
Ciclev10018551m.g Citrus clementina HOM05D004529 ORTHO05D005884 2.2e-46 190.3 299 38.8
Peaxi162Scf00171g00234 Petunia axillaris HOM05D004529 ORTHO05D005884 6.3e-46 188.7 276 41.7
Gohir.A13G089790 Gossypium hirsutum HOM05D004529 ORTHO05D005884 8.2e-46 188.3 227 41.9
RcHm_v2.0_Chr7g0177041 Rosa chinensis HOM05D004529 ORTHO05D005884 8.2e-46 188.3 296 40.2
Nitab4.5_0000782g0040 Nicotiana tabacum HOM05D004529 ORTHO05D005884 1.1e-45 188.0 266 40.6
Potri.017G152601 Populus trichocarpa HOM05D004529 ORTHO05D005884 1.1e-45 188.0 282 41.8
FAN08G2030 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.8e-45 187.2 324 36.4
RcHm_v2.0_Chr7g0177561 Rosa chinensis HOM05D004529 ORTHO05D005884 1.8e-45 187.2 324 37.0
TWI81G0141 Tripterygium wilfordii HOM05D004529 ORTHO05D005884 3.1e-45 186.4 314 39.2
CAN.G929.20 Capsicum annuum HOM05D004529 ORTHO05D005884 5.3e-45 185.7 267 40.4
Potri.004G068700 Populus trichocarpa HOM05D004529 ORTHO05D005884 5.3e-45 185.7 285 39.3
Sabra04G0046400 Salix brachista HOM05D004529 ORTHO05D005884 2.0e-44 183.7 259 41.3
FAN18G3802 Fragaria x ananassa HOM05D004529 ORTHO05D005884 2.6e-44 183.3 324 34.9
Gorai.013G179100 Gossypium raimondii HOM05D004529 ORTHO05D005884 2.6e-44 183.3 208 47.1
FAN04G1556 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.5e-44 183.0 324 35.5
Gohir.A13G153800 Gossypium hirsutum HOM05D004529 ORTHO05D005884 5.9e-44 182.2 208 46.6
FvH4_5g18040 Fragaria vesca HOM05D004529 ORTHO05D005884 7.7e-44 181.8 324 34.9
FAN13G3043 Fragaria x ananassa HOM05D004529 ORTHO05D005884 7.7e-44 181.8 324 35.8
Solyc03g098630.4 Solanum lycopersicum HOM05D004529 ORTHO05D005884 1.7e-43 180.6 299 38.8
Lalb_Chr14g0370211 Lupinus albus HOM05D004529 ORTHO05D005884 2.2e-43 180.3 287 42.2
Medtr6g077930 Medicago truncatula HOM05D004529 ORTHO05D005884 2.2e-43 180.3 241 44.0
Sabra17G0125600 Salix brachista HOM05D004529 ORTHO05D005884 2.9e-43 179.9 295 40.0
MBI06_g11152_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 6.5e-43 178.7 337 36.2
Eucgr.H00653 Eucalyptus grandis HOM05D004529 ORTHO05D005884 8.5e-43 178.3 308 36.7
Gohir.D13G158400 Gossypium hirsutum HOM05D004529 ORTHO05D005884 1.1e-42 177.9 208 46.2
PGSC0003DMG400010150 Solanum tuberosum HOM05D004529 ORTHO05D005884 1.1e-42 177.9 264 41.3
DCAR_011683 Daucus carota HOM05D004529 ORTHO05D005884 1.5e-42 177.6 320 37.8
Psat0s1805g0040 Pisum sativum HOM05D004529 ORTHO05D005884 4.2e-42 176.0 229 44.5
Sopen03g029340 Solanum pennellii HOM05D004529 ORTHO05D005884 4.2e-42 176.0 299 37.8
GSVIVG01024252001 Vitis vinifera HOM05D004529 ORTHO05D005884 5.5e-42 175.6 299 38.1
MBI03_g26653_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 7.2e-42 175.3 248 44.0
Lj2g0011080 Lotus japonicus HOM05D004529 ORTHO05D005884 1.2e-41 174.5 313 38.7
Nitab4.5_0000033g0370 Nicotiana tabacum HOM05D004529 ORTHO05D005884 3.6e-41 172.9 265 40.8
CANSAT64G3027 Cannabis sativa HOM05D004529 ORTHO05D005884 2.3e-40 170.2 273 40.3
MBI02_g39755_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 2.3e-40 170.2 245 40.0
Nitab4.5_0000339g0110 Nicotiana tabacum HOM05D004529 ORTHO05D005884 2.3e-40 170.2 319 37.0
PGR083G0180 Punica granatum HOM05D004529 ORTHO05D005884 4.0e-40 169.5 266 41.0
arahy.Tifrunner.gnm1.ann1.FEKM9F Arachis hypogaea HOM05D004529 ORTHO05D005884 1.5e-39 167.5 231 43.7
Cpa.g.sc168.9 Carica papaya HOM05D004529 ORTHO05D005884 7.5e-39 165.2 296 36.1
Ca_27163_v3 Cicer arietinum L. HOM05D004529 ORTHO05D005884 9.7e-39 164.9 255 40.4
FvH4_5g18430 Fragaria vesca HOM05D004529 ORTHO05D005884 1.3e-38 164.5 239 42.3
FAN08G1550 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.3e-38 164.5 239 41.8
FAN18G1654 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.3e-38 164.5 239 42.3
Sed0013312 Sechium edule HOM05D004529 ORTHO05D005884 1.7e-38 164.1 234 41.5
FAN13G2071 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.8e-37 160.6 226 43.8
arahy.Tifrunner.gnm1.ann1.1UV8VN Arachis hypogaea HOM05D004529 ORTHO05D005884 1.2e-36 157.9 298 37.6
Peaxi162Scf00643g00541 Petunia axillaris HOM05D004529 ORTHO05D005884 1.2e-36 157.9 207 45.4
ClCG01G014790 Citrullus lanatus HOM05D004529 ORTHO05D005884 7.7e-36 155.2 237 42.6
CAN.G65.75 Capsicum annuum HOM05D004529 ORTHO05D005884 2.5e-34 150.2 280 38.2
CDE08G0908 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 2.5e-34 150.2 218 42.2
TAR627G0950 Trochodendron aralioides HOM05D004529 ORTHO05D005884 1.6e-33 147.5 233 40.3
MELO3C002172.2 Cucumis melo HOM05D004529 ORTHO05D005884 2.7e-33 146.7 237 40.5
ATR0618G236 Amborella trichopoda HOM05D004529 ORTHO05D005884 1.8e-32 144.1 256 36.3
CsaV3_1G007540 Cucumis sativus L. HOM05D004529 ORTHO05D005884 2.3e-32 143.7 244 41.8
Zm00001eb198730 Zea mays HOM05D004529 ORTHO05D005884 3.0e-32 143.3 248 34.7
MD17G1087100 Malus domestica HOM05D004529 ORTHO05D005884 2.6e-31 140.2 201 39.8
PSO541G4256 Papaver somniferum HOM05D004529 ORTHO05D005884 3.4e-31 139.8 220 38.2
PSO675G1505 Papaver somniferum HOM05D004529 ORTHO05D005884 3.4e-31 139.8 218 37.6
Prupe.3G227600 Prunus persica HOM05D004529 ORTHO05D005884 3.4e-31 139.8 201 41.3
GSVIVG01029323001 Vitis vinifera HOM05D004529 ORTHO05D005884 1.3e-30 137.9 207 39.6
CDE05G3012 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 3.7e-30 136.3 280 35.4
Thecc.02G167600 Theobroma cacao HOM05D004529 ORTHO05D005884 4.8e-30 136.0 223 38.6
Phvul.004G138800 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 1.8e-29 134.0 124 54.8
PSO782G2500 Papaver somniferum HOM05D004529 ORTHO05D005884 9.1e-29 131.7 317 33.1
Zm00001eb271850 Zea mays HOM05D004529 ORTHO05D005884 9.1e-29 131.7 217 37.8
Haze_13045 Corylus avellana HOM05D004529 ORTHO05D005884 4.5e-28 129.4 230 39.1
PSO063G4972 Papaver somniferum HOM05D004529 ORTHO05D005884 1.3e-27 127.9 316 32.6
RcHm_v2.0_Chr1g0318131 Rosa chinensis HOM05D004529 ORTHO05D005884 1.3e-27 127.9 124 53.2
HPP92_022512 Vanilla planifolia HOM05D004529 ORTHO05D001371 1.7e-27 127.5 233 36.5
Cfa014497 Carpinus fangiana HOM05D004529 ORTHO05D005884 2.9e-27 126.7 246 37.8
Cfa014498 Carpinus fangiana HOM05D004529 ORTHO05D005884 2.9e-27 126.7 246 37.8
Cpa.g.sc34.61 Carica papaya HOM05D040545 ORTHO05D005884 3.8e-27 126.3 270 34.8
Hund01213 Selenicereus undatus HOM05D004529 ORTHO05D005884 1.5e-26 124.4 223 37.7
Sc21g0002170 Simmondsia chinensis HOM05D004529 ORTHO05D005884 1.5e-26 124.4 210 36.2
CDE02G2928 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 1.9e-26 124.0 201 36.8
Os06g0729500 Oryza sativa ssp. japonica HOM05D004529 ORTHO05D005884 5.5e-26 122.5 214 39.3
TPR.G19877 Trifolium pratense HOM05D004529 ORTHO05D005884 9.5e-26 121.7 162 43.8
Nitab4.5_0011808g0010 Nicotiana tabacum HOM05D004529 ORTHO05D005884 4.7e-25 119.4 126 48.4
FAN09G3058 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.4e-24 117.9 203 37.4
FAN02G0641 Fragaria x ananassa HOM05D004529 ORTHO05D005884 5.2e-24 115.9 207 36.7
Sopen06g028620 Solanum pennellii HOM05D004529 ORTHO05D005884 2.0e-23 114.0 200 37.0
FAN04G0338 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.3e-22 111.3 239 34.7
FAN05G1920 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.3e-22 111.3 205 35.6
Sopen06g028600 Solanum pennellii HOM05D004529 ORTHO05D005884 1.3e-22 111.3 284 31.7
RcHm_v2.0_Chr2g0161201 Rosa chinensis HOM05D004529 ORTHO05D005884 1.7e-22 110.9 233 33.5
FvH4_6g44320 Fragaria vesca HOM05D004529 ORTHO05D005884 3.7e-22 109.8 205 36.6
Atru.chr6.3093 Acer truncatum HOM05D004529 ORTHO05D005884 3.2e-21 106.7 270 32.2
Dinv02574 Davidia involucrata HOM05D004529 ORTHO05D005884 2.0e-20 104.0 272 31.2
Cpa.g.sc34.58 Carica papaya HOM05D004529 ORTHO05D005884 2.7e-20 103.6 137 39.4
FAN14G2835 Fragaria x ananassa HOM05D004529 ORTHO05D005884 7.8e-20 102.1 205 35.6
PGSC0003DMG400045819 Solanum tuberosum HOM05D004529 ORTHO05D005884 2.9e-19 100.1 187 36.9
Potri.019G119100 Populus trichocarpa HOM05D004529 ORTHO05D005884 2.5e-18 97.1 186 37.1
Sabra19G0119700 Salix brachista HOM05D004529 ORTHO05D005884 4.7e-17 92.8 183 34.4
Sabra19G0134300 Salix brachista HOM05D004529 ORTHO05D005884 1.4e-16 91.3 183 33.9
Potri.013G149400 Populus trichocarpa HOM05D004529 ORTHO05D005884 1.8e-16 90.9 178 36.5
Sabra19G0119900 Salix brachista HOM05D004529 ORTHO05D005884 4.0e-16 89.7 183 33.9
Sabra19G0134100 Salix brachista HOM05D004529 ORTHO05D005884 8.9e-16 88.6 183 33.3
Mapoly0005s0070 Marchantia polymorpha HOM05D004529 ORTHO05D000444 4.9e-14 82.8 253 28.5
Dinv02572 Davidia involucrata HOM05D004529 ORTHO05D005884 4.3e-10 69.7 134 33.6
Ciclev10018263m.g Citrus clementina HOM05D004529 ORTHO05D005884 3.1e-08 63.5 196 31.1
BcaB07g34007 Brassica carinata HOM05D000608 ORTHO05D000444 1.3e-06 58.2 158 27.8


User provided reference genes

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