Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P233T35 Lonicera japonica HOM05D003037 ORTHO05D003659 8.0e-70 266.9 131 100.0
Manes.07G022900 Manihot esculenta HOM05D003037 ORTHO05D003659 6.2e-30 134.4 65 95.4
Sc16g0002460 Simmondsia chinensis HOM05D003037 ORTHO05D003659 1.4e-29 133.3 65 92.3
AUR62014220 Chenopodium quinoa HOM05D003037 ORTHO05D003659 2.4e-29 132.5 65 92.3
CSS0041282 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 1.2e-28 130.2 65 89.2
Hma1.2p1_0427F.1_g150700 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 1.2e-28 130.2 65 90.8
GSVIVG01023275001 Vitis vinifera HOM05D003037 ORTHO05D003659 1.2e-28 130.2 89 74.2
Ah.03g137100 Amaranthus hybridus HOM05D003037 ORTHO05D003659 1.5e-28 129.8 65 90.8
A06p06470 Brassica napus HOM05D003037 ORTHO05D003659 1.5e-28 129.8 65 89.2
CSS0012029 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 1.5e-28 129.8 65 89.2
CiPaw.05G051700 Carya illinoinensis HOM05D003037 ORTHO05D003659 1.5e-28 129.8 65 90.8
Ciclev10004097m.g Citrus clementina HOM05D003037 ORTHO05D003659 1.5e-28 129.8 65 90.8
Peaxi162Scf00011g00092 Petunia axillaris HOM05D003037 ORTHO05D003659 2.0e-28 129.4 65 87.7
Rhsim11G0125200 Rhododendron simsii HOM05D003037 ORTHO05D003659 2.0e-28 129.4 65 90.8
Sopen01g046150 Solanum pennellii HOM05D003037 ORTHO05D003659 2.0e-28 129.4 65 87.7
PGSC0003DMG400024926 Solanum tuberosum HOM05D003037 ORTHO05D003659 2.0e-28 129.4 65 87.7
EL10Ac6g14061 Beta vulgaris HOM05D003037 ORTHO05D003659 2.6e-28 129.0 65 89.2
BcaC05g24849 Brassica carinata HOM05D003037 ORTHO05D003659 2.6e-28 129.0 65 89.2
BraA06t23858Z Brassica rapa HOM05D003037 ORTHO05D003659 2.6e-28 129.0 65 89.2
Duzib248G0822 Durio zibethinus HOM05D003037 ORTHO05D003659 2.6e-28 129.0 65 90.8
Migut.B00789 Erythranthe guttata HOM05D003037 ORTHO05D003659 2.6e-28 129.0 65 87.7
Nitab4.5_0000948g0100 Nicotiana tabacum HOM05D003037 ORTHO05D003659 2.6e-28 129.0 65 87.7
Nitab4.5_0002596g0060 Nicotiana tabacum HOM05D003037 ORTHO05D003659 2.6e-28 129.0 65 87.7
C05p07880 Brassica napus HOM05D003037 ORTHO05D003659 3.4e-28 128.6 65 87.7
BolC5t29539H Brassica oleracea HOM05D003037 ORTHO05D003659 3.4e-28 128.6 65 87.7
CAN.G798.49 Capsicum annuum HOM05D003037 ORTHO05D003659 3.4e-28 128.6 65 87.7
Dinv19397 Davidia involucrata HOM05D003037 ORTHO05D003659 3.4e-28 128.6 65 89.2
TAR381G0039 Trochodendron aralioides HOM05D003037 ORTHO05D003659 3.4e-28 128.6 65 92.3
Ah.02g126950 Amaranthus hybridus HOM05D003037 ORTHO05D003659 4.5e-28 128.3 98 68.4
AUR62041122 Chenopodium quinoa HOM05D003037 ORTHO05D003659 4.5e-28 128.3 65 87.7
COL.COLO4_17755 Corchorus olitorius HOM05D003037 ORTHO05D003659 4.5e-28 128.3 65 89.2
QL02p100067 Quercus lobata HOM05D003037 ORTHO05D003659 4.5e-28 128.3 65 90.8
Thecc.02G025100 Theobroma cacao HOM05D003037 ORTHO05D003659 4.5e-28 128.3 65 89.2
Atru.chr6.760 Acer truncatum HOM05D003037 ORTHO05D003659 5.8e-28 127.9 65 89.2
CARHR009780 Cardamine hirsuta HOM05D003037 ORTHO05D003659 5.8e-28 127.9 65 87.7
Gohir.D12G042900 Gossypium hirsutum HOM05D003037 ORTHO05D003659 5.8e-28 127.9 65 89.2
QL04p071344 Quercus lobata HOM05D003037 ORTHO05D000064 5.8e-28 127.9 64 92.2
SGA_v2.0_scaffold272G46366 Striga asiatica HOM05D003037 ORTHO05D003659 5.8e-28 127.9 65 89.2
vmacro01725 Vaccinium macrocarpon HOM05D003037 ORTHO05D003659 5.8e-28 127.9 65 89.2
Manes.10G120100 Manihot esculenta HOM05D003037 ORTHO05D003659 7.6e-28 127.5 88 71.6
QL02p100083 Quercus lobata HOM05D003037 ORTHO05D003659 7.6e-28 127.5 65 90.8
MD05G1010900 Malus domestica HOM05D003037 ORTHO05D003659 9.9e-28 127.1 65 87.7
Oeu036681.1 Olea europaea HOM05D003037 ORTHO05D003659 9.9e-28 127.1 65 87.7
Prupe.8G013600 Prunus persica HOM05D003037 ORTHO05D003659 9.9e-28 127.1 65 87.7
TAR624G0307 Trochodendron aralioides HOM05D003037 ORTHO05D003659 9.9e-28 127.1 65 89.2
Cfa005476 Carpinus fangiana HOM05D003037 ORTHO05D003659 1.3e-27 126.7 65 87.7
DCAR_025355 Daucus carota HOM05D003037 ORTHO05D003659 1.3e-27 126.7 65 89.2
Glyma.03G176400 Glycine max HOM05D003037 ORTHO05D003659 1.3e-27 126.7 98 66.3
Gohir.A04G130600 Gossypium hirsutum HOM05D003037 ORTHO05D003659 1.3e-27 126.7 65 87.7
Gohir.A12G043400 Gossypium hirsutum HOM05D003037 ORTHO05D003659 1.3e-27 126.7 65 87.7
Gohir.D04G175800 Gossypium hirsutum HOM05D003037 ORTHO05D003659 1.3e-27 126.7 65 87.7
Gorai.012G167100 Gossypium raimondii HOM05D003037 ORTHO05D003659 1.3e-27 126.7 65 87.7
Actinidia00185 Actinidia chinensis HOM05D003037 ORTHO05D003659 1.7e-27 126.3 65 86.2
CARHR053980 Cardamine hirsuta HOM05D003037 ORTHO05D003659 1.7e-27 126.3 65 86.2
HanXRQChr07g0187481 Helianthus annuus HOM05D003037 ORTHO05D003659 1.7e-27 126.3 65 86.2
Sp1g08400 Schrenkiella parvula HOM05D003037 ORTHO05D003659 1.7e-27 126.3 65 86.2
Solyc01g103750.4 Solanum lycopersicum HOM05D003037 ORTHO05D003659 1.7e-27 126.3 65 86.2
CANSAT35G1041 Cannabis sativa HOM05D003037 ORTHO05D003659 2.2e-27 125.9 65 89.2
Cpa.g.sc30.45 Carica papaya HOM05D003037 ORTHO05D003659 2.2e-27 125.9 65 89.2
Migut.N00833 Erythranthe guttata HOM05D003037 ORTHO05D003659 2.2e-27 125.9 65 86.2
Glyma.19G177100 Glycine max HOM05D003037 ORTHO05D003659 2.2e-27 125.9 98 65.3
QL02p100153 Quercus lobata HOM05D003037 ORTHO05D003659 2.2e-27 125.9 65 89.2
SalBow3G2424 Salvia bowleyana HOM05D003037 ORTHO05D003659 2.2e-27 125.9 65 84.6
Thhalv10007791m.g Eutrema salsugineum HOM05D003037 ORTHO05D003659 2.9e-27 125.6 65 86.2
Gorai.008G044900 Gossypium raimondii HOM05D003037 ORTHO05D003659 2.9e-27 125.6 65 87.7
Lalb_Chr25g0278781 Lupinus albus HOM05D003037 ORTHO05D003659 2.9e-27 125.6 65 86.2
MBI05_g00183_MAGBIO Magnolia biondii HOM05D003037 ORTHO05D003659 2.9e-27 125.6 65 86.2
PSO541G5800 Papaver somniferum HOM05D003037 ORTHO05D003659 2.9e-27 125.6 65 87.7
PSO675G4829 Papaver somniferum HOM05D003037 ORTHO05D003659 2.9e-27 125.6 65 87.7
Sed0009851 Sechium edule HOM05D003037 ORTHO05D003659 2.9e-27 125.6 65 86.2
CSS0017565 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 3.8e-27 125.2 61 91.8
Carub.0002s0655 Capsella rubella HOM05D003037 ORTHO05D003659 3.8e-27 125.2 65 84.6
FvH4_7g02550 Fragaria vesca HOM05D003037 ORTHO05D003659 3.8e-27 125.2 65 86.2
FAN01G1632 Fragaria x ananassa HOM05D003037 ORTHO05D003659 3.8e-27 125.2 65 86.2
FAN03G1983 Fragaria x ananassa HOM05D003037 ORTHO05D003659 3.8e-27 125.2 65 86.2
FAN06G4382 Fragaria x ananassa HOM05D003037 ORTHO05D003659 3.8e-27 125.2 65 86.2
FAN10G2304 Fragaria x ananassa HOM05D003037 ORTHO05D003659 3.8e-27 125.2 65 86.2
Medtr4g130680 Medicago truncatula HOM05D003037 ORTHO05D003659 3.8e-27 125.2 65 84.6
PGR042G0094 Punica granatum HOM05D003037 ORTHO05D003659 3.8e-27 125.2 65 86.2
MELO3C011826.2 Cucumis melo HOM05D003037 ORTHO05D003659 4.9e-27 124.8 65 84.6
CsaV3_5G029840 Cucumis sativus L. HOM05D003037 ORTHO05D003659 4.9e-27 124.8 65 84.6
Duzib052G1010 Durio zibethinus HOM05D003037 ORTHO05D003659 4.9e-27 124.8 65 87.7
Hma1.2p1_0297F.1_g117000 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 4.9e-27 124.8 69 81.2
Potri.019G057200 Populus trichocarpa HOM05D003037 ORTHO05D003659 4.9e-27 124.8 65 86.2
QL02p100111 Quercus lobata HOM05D003037 ORTHO05D003659 4.9e-27 124.8 64 89.1
RcHm_v2.0_Chr1g0321271 Rosa chinensis HOM05D003037 ORTHO05D003659 4.9e-27 124.8 65 87.7
Sp2g05490 Schrenkiella parvula HOM05D003037 ORTHO05D003659 4.9e-27 124.8 65 84.6
AL1G20370 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 6.4e-27 124.4 65 84.6
AT1G09795 Arabidopsis thaliana HOM05D003037 ORTHO05D003659 6.4e-27 124.4 65 84.6
HanXRQChr03g0065191 Helianthus annuus HOM05D003037 ORTHO05D003659 6.4e-27 124.4 65 86.2
Oeu000128.2 Olea europaea HOM05D003037 ORTHO05D003659 6.4e-27 124.4 64 87.5
TWI75G1787 Tripterygium wilfordii HOM05D003037 ORTHO05D003659 6.4e-27 124.4 65 87.7
Carub.0001s0915 Capsella rubella HOM05D003037 ORTHO05D003659 8.4e-27 124.0 65 84.6
Thhalv10023501m.g Eutrema salsugineum HOM05D003037 ORTHO05D003659 8.4e-27 124.0 65 84.6
MD10G1009700 Malus domestica HOM05D003037 ORTHO05D003659 8.4e-27 124.0 65 86.2
TWI12G1167 Tripterygium wilfordii HOM05D003037 ORTHO05D003659 8.4e-27 124.0 65 87.7
VMungo0540G1935 Vigna mungo HOM05D003037 ORTHO05D003659 8.4e-27 124.0 98 64.3
AL2G17980 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 1.1e-26 123.6 65 83.1
Psat1g223400 Pisum sativum HOM05D003037 ORTHO05D003659 1.1e-26 123.6 65 83.1
THA.LOC104823696 Tarenaya hassleriana HOM05D003037 ORTHO05D003659 1.1e-26 123.6 65 83.1
Aa31LG1G5170 Aethionema arabicum HOM05D003037 ORTHO05D003659 1.4e-26 123.2 65 83.1
AT1G58080 Arabidopsis thaliana HOM05D003037 ORTHO05D003659 1.4e-26 123.2 65 83.1
MSTRG.16497 Avicennia marina HOM05D003037 ORTHO05D003659 1.4e-26 123.2 65 83.1
A09p18570 Brassica napus HOM05D003037 ORTHO05D003659 1.4e-26 123.2 65 83.1
BraA09t37483Z Brassica rapa HOM05D003037 ORTHO05D003659 1.4e-26 123.2 65 83.1
Hma1.2p1_1108F.1_g257915 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 1.4e-26 123.2 65 84.6
Hma1.2p1_1108F.1_g257920 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 1.4e-26 123.2 65 84.6
SGA_v2.0_scaffold8G04432 Striga asiatica HOM05D003037 ORTHO05D003659 1.4e-26 123.2 65 84.6
arahy.Tifrunner.gnm1.ann1.3Q8GGF Arachis hypogaea HOM05D003037 ORTHO05D003659 1.9e-26 122.9 65 84.6
arahy.Tifrunner.gnm1.ann1.Y8ZHMJ Arachis hypogaea HOM05D003037 ORTHO05D003659 1.9e-26 122.9 65 84.6
BcaC09g49512 Brassica carinata HOM05D003037 ORTHO05D003659 1.9e-26 122.9 65 83.1
C01p35730 Brassica napus HOM05D003037 ORTHO05D003659 1.9e-26 122.9 65 83.1
BolC1t03532H Brassica oleracea HOM05D003037 ORTHO05D003659 1.9e-26 122.9 65 83.1
BraA01t02947Z Brassica rapa HOM05D003037 ORTHO05D003659 1.9e-26 122.9 65 83.1
Eucgr.G00351 Eucalyptus grandis HOM05D003037 ORTHO05D003659 1.9e-26 122.9 98 64.3
Medtr2g006040 Medicago truncatula HOM05D003037 ORTHO05D003659 1.9e-26 122.9 96 62.5
Nn4g24648 Nelumbo nucifera HOM05D003037 ORTHO05D003659 1.9e-26 122.9 65 86.2
ATR0661G422 Amborella trichopoda HOM05D003037 ORTHO05D003659 2.4e-26 122.5 65 84.6
BcaC02g10704 Brassica carinata HOM05D003037 ORTHO05D003659 2.4e-26 122.5 65 81.5
A03p66520 Brassica napus HOM05D003037 ORTHO05D003659 2.4e-26 122.5 65 81.5
C04p26910 Brassica napus HOM05D003037 ORTHO05D003659 2.4e-26 122.5 65 81.5
BolC4t24107H Brassica oleracea HOM05D003037 ORTHO05D003659 2.4e-26 122.5 65 81.5
BraA03t15703Z Brassica rapa HOM05D003037 ORTHO05D003659 2.4e-26 122.5 65 81.5
Ca_00048_v3 Cicer arietinum L. HOM05D003037 ORTHO05D003659 2.4e-26 122.5 107 61.7
CSS0041741 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 3.2e-26 122.1 61 90.2
Cc02_g22990 Coffea canephora HOM05D003037 ORTHO05D003659 3.2e-26 122.1 65 83.1
Phvul.006G218100 Phaseolus vulgaris HOM05D003037 ORTHO05D003659 3.2e-26 122.1 98 63.3
AL2G18010 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 4.2e-26 121.7 65 83.1
CSS0002197 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 4.2e-26 121.7 61 90.2
ECA240G1415 Erigeron canadensis HOM05D003037 ORTHO05D003659 4.2e-26 121.7 107 60.7
RcHm_v2.0_Chr1g0321241 Rosa chinensis HOM05D003037 ORTHO05D003659 4.2e-26 121.7 65 84.6
Actinidia39012 Actinidia chinensis HOM05D003037 ORTHO05D003659 5.5e-26 121.3 65 83.1
ClCG11G013340 Citrullus lanatus HOM05D003037 ORTHO05D003659 5.5e-26 121.3 65 83.1
A01p28170 Brassica napus HOM05D003037 ORTHO05D003659 7.1e-26 120.9 65 81.5
Eucgr.G00352 Eucalyptus grandis HOM05D003037 ORTHO05D003659 7.1e-26 120.9 98 63.3
Lsat_1_v5_gn_9_120700 Lactuca sativa HOM05D003037 ORTHO05D003659 7.1e-26 120.9 65 83.1
BcaC04g22114 Brassica carinata HOM05D003037 ORTHO05D003659 9.3e-26 120.6 65 81.5
BcaC06g31782 Brassica carinata HOM05D003037 ORTHO05D005835 9.3e-26 120.6 65 80.0
C09p23190 Brassica napus HOM05D003037 ORTHO05D003659 9.3e-26 120.6 65 81.5
BolC9t55238H Brassica oleracea HOM05D003037 ORTHO05D003659 9.3e-26 120.6 65 81.5
CSS0016888 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 9.3e-26 120.6 62 87.1
CSS0046523 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 1.2e-25 120.2 62 87.1
RcHm_v2.0_Chr1g0321261 Rosa chinensis HOM05D003037 ORTHO05D003659 1.2e-25 120.2 65 84.6
CDE05G2487 Ceratophyllum demersum HOM05D003037 ORTHO05D003659 1.6e-25 119.8 84 67.9
CDE11G0137 Ceratophyllum demersum HOM05D003037 ORTHO05D003659 1.6e-25 119.8 88 64.8
Sed0025195 Sechium edule HOM05D003037 ORTHO05D003659 2.7e-25 119.0 102 58.8
Peaxi162Scf00002g02511 Petunia axillaris HOM05D003037 ORTHO05D003659 4.6e-25 118.2 65 78.5
Prupe.8G013100 Prunus persica HOM05D003037 ORTHO05D003659 6.0e-25 117.9 65 81.5
PGR142G1570 Punica granatum HOM05D003037 ORTHO05D003659 6.0e-25 117.9 65 81.5
Potri.004G222400 Populus trichocarpa HOM05D003037 ORTHO05D003659 7.9e-25 117.5 65 80.0
RcHm_v2.0_Chr6g0256761 Rosa chinensis HOM05D003037 ORTHO05D003659 7.9e-25 117.5 65 83.1
RcHm_v2.0_Chr6g0258041 Rosa chinensis HOM05D003037 ORTHO05D003659 7.9e-25 117.5 65 83.1
Aa31LG2G11000 Aethionema arabicum HOM05D003037 ORTHO05D003659 1.8e-24 116.3 65 81.5
unitig_747.g21264 Utricularia gibba HOM05D003037 ORTHO05D003659 2.3e-24 115.9 99 57.6
SEGI_07958 Sequoiadendron giganteum HOM05D003037 ORTHO05D003659 3.9e-24 115.2 65 81.5
ECA236G0695 Erigeron canadensis HOM05D003037 ORTHO05D003659 5.1e-24 114.8 65 78.5
Lsat_1_v5_gn_7_75321 Lactuca sativa HOM05D003037 ORTHO05D003659 5.1e-24 114.8 65 76.9
Sabra01G0168500 Salix brachista HOM05D003037 ORTHO05D003659 8.7e-24 114.0 65 78.5
Lj4g0001882 Lotus japonicus HOM05D003037 ORTHO05D003659 1.1e-23 113.6 98 58.2
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 3.3e-23 112.1 68 72.1
Lsat_1_v5_gn_9_120721 Lactuca sativa HOM05D003037 ORTHO05D003659 4.3e-23 111.7 96 59.4
Lj9C300T15 Lonicera japonica HOM05D003037 ORTHO05D003659 4.3e-23 111.7 53 98.1
THA.LOC104816806 Tarenaya hassleriana HOM05D003037 ORTHO05D003659 3.7e-22 108.6 65 70.8
MSTRG.27854 Avicennia marina HOM05D003037 ORTHO05D003659 8.1e-22 107.5 65 73.8
Pp3c22_160 Physcomitrium patens HOM05D003037 ORTHO05D003659 1.1e-21 107.1 65 73.8
CSS0026106 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 2.4e-21 105.9 56 83.9
Pp3c18_12130 Physcomitrium patens HOM05D003037 ORTHO05D003659 2.4e-21 105.9 65 72.3
AagrBONN_evm.TU.Sc2ySwM_368.301 Anthoceros agrestis HOM05D003037 ORTHO05D003659 5.3e-21 104.8 65 69.2
MBI04_g26974_MAGBIO Magnolia biondii HOM05D003037 ORTHO05D003659 6.9e-21 104.4 81 61.7
Mapoly0157s0018 Marchantia polymorpha HOM05D003037 ORTHO05D003659 2.0e-20 102.8 65 66.2
SMO146G0343 Selaginella moellendorffii HOM05D003037 ORTHO05D003659 1.3e-19 100.1 65 64.6
Os03g0134300 Oryza sativa ssp. japonica HOM05D003037 ORTHO05D003659 6.5e-19 97.8 65 63.1
Dinv07473 Davidia involucrata HOM05D003037 ORTHO05D003659 1.9e-18 96.3 65 72.3
Hma1.2p1_1469F.1_g285550 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 2.1e-17 92.8 50 82.0
Hma1.2p1_1658F.1_g296076 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 2.1e-17 92.8 50 82.0
Zm00001eb316500 Zea mays HOM05D003037 ORTHO05D003659 1.8e-16 89.7 63 60.3
QL02p067309 Quercus lobata HOM05D003037 ORTHO05D003659 7.4e-15 84.3 53 73.6
CBR_g16944 Chara braunii HOM05D003037 ORTHO05D003659 2.8e-14 82.4 65 53.8
CSS0001224 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 4.8e-14 81.6 61 68.9
SGA_v2.0_scaffold279G46800 Striga asiatica HOM05D003037 ORTHO05D403307 1.5e-12 76.6 37 86.5
Cre09.g410650 Chlamydomonas reinhardtii HOM05D003037 ORTHO05D003659 7.6e-12 74.3 65 50.8
PRCOL_00006544 Prasinoderma coloniale HOM05D003037 ORTHO05D003659 3.2e-10 68.9 66 53.0
MCO01G429 Micromonas commoda HOM05D003037 ORTHO05D003659 6.7e-08 61.2 59 47.5
Rhsim05G0031000 Rhododendron simsii HOM05D003037 ORTHO05D003659 9.7e-07 57.4 39 69.2
RcHm_v2.0_Chr1g0321211 Rosa chinensis HOM05D003037 ORTHO05D003659 8.2e-06 54.3 29 82.8


User provided reference genes

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