Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P127T2 Lonicera japonica HOM05D019264 ORTHO05D013548 7.8e-48 193.4 90 100.0
Lj3P827T31 Lonicera japonica HOM05D019264 ORTHO05D013548 5.6e-14 80.9 93 40.9
Lj5P393T7 Lonicera japonica HOM05D019264 ORTHO05D013548 3.1e-12 75.1 85 40.0
Lj9P412T40 Lonicera japonica HOM05D000003 ORTHO05D013548 3.1e-12 75.1 64 46.9
Lj9P318T44 Lonicera japonica HOM05D019264 ORTHO05D013548 7.6e-11 70.5 60 41.7
Lj8P336T28 Lonicera japonica HOM05D019264 ORTHO05D013548 9.9e-11 70.1 79 39.2
CANSAT56G1931 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-10 68.9 84 36.9
CANSAT25G1377 Cannabis sativa HOM05D000003 ORTHO05D000006 4.9e-10 67.8 86 33.7
CANSAT54G1259 Cannabis sativa HOM05D000003 ORTHO05D000004 6.4e-10 67.4 90 40.0
TPR.G22189 Trifolium pratense HOM05D000003 ORTHO05D013548 1.1e-09 66.6 82 35.4
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-09 66.2 87 40.2
Lj5A492G8 Lonicera japonica HOM05D000003 ORTHO05D013548 1.9e-09 65.9 82 36.6
CANSAT64G0360 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-09 65.5 86 38.4
CANSAT11G1631 Cannabis sativa HOM05D000003 ORTHO05D000006 9.3e-09 63.5 91 31.9
CANSAT78G2353 Cannabis sativa HOM05D000003 ORTHO05D000004 9.3e-09 63.5 90 34.4
Lj2P943T7 Lonicera japonica HOM05D000003 ORTHO05D000006 1.2e-08 63.2 82 35.4
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-08 62.8 91 33.0
EL10Ac7g17050 Beta vulgaris HOM05D000003 ORTHO05D000006 2.1e-08 62.4 75 37.3
CANSAT21G0602 Cannabis sativa HOM05D000003 ORTHO05D000006 2.7e-08 62.0 90 34.4
CANSAT78G0953 Cannabis sativa HOM05D000003 ORTHO05D000006 2.7e-08 62.0 91 35.2
Lj4P801T16 Lonicera japonica HOM05D000003 ORTHO05D000006 2.7e-08 62.0 60 41.7
CANSAT78G1210 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-08 61.6 90 32.2
CANSAT78G1434 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-08 61.2 91 34.1
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-08 60.8 90 33.3
CANSAT64G1116 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-08 60.8 78 30.8
CANSAT56G3772 Cannabis sativa HOM05D000003 ORTHO05D000004 7.8e-08 60.5 89 33.7
CANSAT25G2690 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-07 60.1 91 30.8
CANSAT54G1425 Cannabis sativa HOM05D000003 ORTHO05D000006 1.0e-07 60.1 90 32.2
CANSAT64G2379 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-07 60.1 90 32.2
CANSAT11G1881 Cannabis sativa HOM05D000003 ORTHO05D000006 1.3e-07 59.7 91 31.9
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-07 59.3 90 32.2
CANSAT80G2702 Cannabis sativa HOM05D000003 ORTHO05D000006 1.7e-07 59.3 83 36.1
COL.COLO4_24157 Corchorus olitorius HOM05D007567 ORTHO05D000126 1.7e-07 59.3 98 28.6
COL.COLO4_24628 Corchorus olitorius HOM05D007567 ORTHO05D000006 1.7e-07 59.3 81 34.6
Manes.04G087125 Manihot esculenta HOM05D000003 ORTHO05D000006 1.7e-07 59.3 72 34.7
CANSAT21G0495 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-07 58.9 83 34.9
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-07 58.9 90 31.1
CANSAT54G0890 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-07 58.9 82 35.4
CANSAT56G0265 Cannabis sativa HOM05D000003 ORTHO05D000006 2.3e-07 58.9 90 32.2
TPR.G18999 Trifolium pratense HOM05D000003 ORTHO05D000006 2.3e-07 58.9 94 29.8
CANSAT54G2918 Cannabis sativa HOM05D000003 ORTHO05D000006 3.0e-07 58.5 90 33.3
CANSAT78G2124 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-07 58.5 80 33.8
CANSAT25G2525 Cannabis sativa HOM05D000003 ORTHO05D000004 3.9e-07 58.2 90 28.9
CANSAT25G2411 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-07 57.8 82 36.6
CANSAT54G2152 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-07 57.8 90 32.2
RcHm_v2.0_Chr2g0136131 Rosa chinensis HOM05D000003 ORTHO05D000006 6.6e-07 57.4 90 34.4
CANSAT11G0192 Cannabis sativa HOM05D000003 ORTHO05D000004 8.7e-07 57.0 86 33.7
CANSAT64G1355 Cannabis sativa HOM05D000003 ORTHO05D000006 8.7e-07 57.0 90 31.1
CANSAT64G2324 Cannabis sativa HOM05D000003 ORTHO05D000004 8.7e-07 57.0 83 34.9
Manes.03G022751 Manihot esculenta HOM05D000003 ORTHO05D000004 8.7e-07 57.0 58 36.2
PSO170G6756 Papaver somniferum HOM05D000003 ORTHO05D000006 8.7e-07 57.0 73 38.4
Atru.chr11.167 Acer truncatum HOM05D000003 ORTHO05D000006 1.1e-06 56.6 96 32.3
Atru.chr13.2346 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-06 56.6 92 32.6
CANSAT01G1065 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-06 56.6 90 31.1
CANSAT21G0223 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-06 56.6 80 31.2
CANSAT80G2809 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-06 56.6 83 34.9
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-06 56.6 91 34.1
COL.COLO4_19781 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.1e-06 56.6 81 32.1
Atru.chr3.2272 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 56.2 79 31.6
EL10Ac2g04834 Beta vulgaris HOM05D000003 ORTHO05D000006 1.5e-06 56.2 75 32.0
CANSAT35G0803 Cannabis sativa HOM05D000003 ORTHO05D000006 1.5e-06 56.2 90 33.3
CANSAT01G3288 Cannabis sativa HOM05D000003 ORTHO05D000006 1.9e-06 55.8 95 29.5
CANSAT64G2969 Cannabis sativa HOM05D000003 ORTHO05D000006 1.9e-06 55.8 82 36.6
CANSAT80G0272 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-06 55.8 73 35.6
COL.COLO4_19177 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.9e-06 55.8 81 28.4
CANSAT21G1403 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-06 55.5 84 31.0
COL.COLO4_03297 Corchorus olitorius HOM05D007567 ORTHO05D000126 2.5e-06 55.5 81 30.9
Manes.01G065050 Manihot esculenta HOM05D000003 ORTHO05D000006 2.5e-06 55.5 79 30.4
Medtr1g051330 Medicago truncatula HOM05D000003 ORTHO05D000004 2.5e-06 55.5 77 29.9
CANSAT01G2119 Cannabis sativa HOM05D000003 ORTHO05D000006 3.3e-06 55.1 72 36.1
CANSAT78G2030 Cannabis sativa HOM05D000003 ORTHO05D000006 3.3e-06 55.1 79 30.4
CANSAT80G0163 Cannabis sativa HOM05D000003 ORTHO05D000006 3.3e-06 55.1 94 33.0
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 3.3e-06 55.1 86 31.4
COL.COLO4_28312 Corchorus olitorius HOM05D000003 ORTHO05D000006 3.3e-06 55.1 82 29.3
Lj5C73T11 Lonicera japonica HOM05D000003 ORTHO05D000006 3.3e-06 55.1 71 35.2
COL.COLO4_13667 Corchorus olitorius HOM05D020572 ORTHO05D000006 4.3e-06 54.7 49 44.9
Medtr4g020630 Medicago truncatula HOM05D000003 ORTHO05D000006 4.3e-06 54.7 86 26.7
Sc01g0005390 Simmondsia chinensis HOM05D000003 ORTHO05D000006 4.3e-06 54.7 85 28.2
CANSAT01G1362 Cannabis sativa HOM05D000003 ORTHO05D000006 5.6e-06 54.3 92 33.7
CANSAT54G0761 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-06 54.3 89 30.3
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-06 54.3 91 33.0
PSO210G3844 Papaver somniferum HOM05D000024 ORTHO05D000006 5.6e-06 54.3 89 29.2
QL03p072137 Quercus lobata HOM05D000003 ORTHO05D000006 5.6e-06 54.3 83 31.3
Atru.chr10.150 Acer truncatum HOM05D000003 ORTHO05D000004 7.3e-06 53.9 89 31.5
Atru.chr4.2368 Acer truncatum HOM05D000003 ORTHO05D000004 7.3e-06 53.9 92 31.5
CANSAT54G2459 Cannabis sativa HOM05D000003 ORTHO05D000006 7.3e-06 53.9 82 31.7
QL08p005297 Quercus lobata HOM05D000003 ORTHO05D000006 7.3e-06 53.9 73 35.6
CANSAT25G1351 Cannabis sativa HOM05D000003 ORTHO05D000006 9.6e-06 53.5 83 36.1
COL.COLO4_21456 Corchorus olitorius HOM05D000003 ORTHO05D000006 9.6e-06 53.5 98 26.5
Lj6g0004382 Lotus japonicus HOM05D000003 ORTHO05D000004 9.6e-06 53.5 94 29.8
PSO782G0342 Papaver somniferum HOM05D000003 ORTHO05D000006 9.6e-06 53.5 76 31.6


User provided reference genes

Program Settings