Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P115T4 Lonicera japonica HOM05D001845 ORTHO05D001878 5.4e-204 714.1 373 100.0
Lj9A97T17 Lonicera japonica HOM05D001845 ORTHO05D001878 1.3e-181 639.8 342 98.0
Lj9A98T12 Lonicera japonica HOM05D001845 ORTHO05D001878 6.4e-181 637.5 342 97.7
Lju1040A2G24 Lonicera japonica HOM05D001845 ORTHO05D001878 2.8e-168 595.5 321 96.9
Lju515C2G3 Lonicera japonica HOM05D001845 ORTHO05D001878 4.4e-153 545.0 342 86.8
Lju963A5T21 Lonicera japonica HOM05D001845 ORTHO05D001878 9.5e-108 394.4 349 69.1
Dinv40302 Davidia involucrata HOM05D001965 ORTHO05D002112 1.1e-68 264.6 414 47.6
DCAR_003338 Daucus carota HOM05D001845 ORTHO05D001878 2.8e-59 233.4 354 48.3
QL03p007735 Quercus lobata HOM05D001845 ORTHO05D001878 2.4e-58 230.3 357 46.8
GSVIVG01000088001 Vitis vinifera HOM05D001845 ORTHO05D001878 9.0e-58 228.4 368 46.5
QL03p007369 Quercus lobata HOM05D001845 ORTHO05D001878 5.8e-57 225.7 357 46.2
Actinidia23645 Actinidia chinensis HOM05D001845 ORTHO05D001878 7.6e-57 225.3 341 46.6
Cfa006600 Carpinus fangiana HOM05D001845 ORTHO05D001878 1.3e-56 224.6 364 47.8
CiPaw.08G163900 Carya illinoinensis HOM05D001845 ORTHO05D001878 5.5e-55 219.2 364 46.2
Haze_04183 Corylus avellana HOM05D001845 ORTHO05D001878 4.6e-54 216.1 364 46.7
Ciclev10000263m.g Citrus clementina HOM05D001845 ORTHO05D001878 1.8e-50 204.1 365 44.4
CSS0024731 Camellia sinensis var. sinensis HOM05D001845 ORTHO05D001878 2.0e-49 200.7 354 44.4
Solyc01g099230.3 Solanum lycopersicum HOM05D001845 ORTHO05D001878 3.8e-48 196.4 360 41.7
PGSC0003DMG400024695 Solanum tuberosum HOM05D001845 ORTHO05D001878 2.7e-46 190.3 360 40.6
TWI56G0127 Tripterygium wilfordii HOM05D001845 ORTHO05D001878 2.7e-46 190.3 360 44.2
CAN.G1034.30 Capsicum annuum HOM05D001845 ORTHO05D001878 4.6e-46 189.5 398 38.7
Nitab4.5_0022112g0010 Nicotiana tabacum HOM05D001845 ORTHO05D001878 1.8e-45 187.6 363 41.9
Peaxi162Scf00037g00630 Petunia axillaris HOM05D001845 ORTHO05D001878 2.3e-45 187.2 359 41.5
Sopen01g042780 Solanum pennellii HOM05D001845 ORTHO05D001878 3.9e-45 186.4 272 46.0
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 1.5e-41 174.5 375 36.0
Oeu020847.1 Olea europaea HOM05D001845 ORTHO05D001878 1.0e-40 171.8 328 43.6
MD04G1203800 Malus domestica HOM05D001845 ORTHO05D001878 1.1e-39 168.3 413 38.0
MD12G1217600 Malus domestica HOM05D001845 ORTHO05D001878 5.5e-39 166.0 354 41.2
Potri.005G033000 Populus trichocarpa HOM05D001845 ORTHO05D001878 7.2e-39 165.6 348 42.5
Potri.013G022300 Populus trichocarpa HOM05D001845 ORTHO05D001878 1.2e-38 164.9 352 40.3
CANSAT54G3017 Cannabis sativa HOM05D002009 ORTHO05D006831 1.6e-38 164.5 367 39.2
Hma1.2p1_1077F.1_g254715 Hydrangea macrophylla HOM05D001845 ORTHO05D001878 1.6e-38 164.5 338 42.3
Thecc.05G301200 Theobroma cacao HOM05D001845 ORTHO05D001878 2.1e-38 164.1 358 38.8
Cpa.g.sc48.69 Carica papaya HOM05D001845 ORTHO05D001878 2.7e-38 163.7 315 40.6
Cc02_g33300 Coffea canephora HOM05D001845 ORTHO05D001878 6.1e-38 162.5 372 38.7
MSTRG.27990 Avicennia marina HOM05D001845 ORTHO05D001878 7.9e-38 162.2 352 38.1
Hund07077 Selenicereus undatus HOM05D001845 ORTHO05D001878 3.0e-37 160.2 385 37.1
vmacro04985 Vaccinium macrocarpon HOM05D001845 ORTHO05D001878 3.9e-37 159.8 347 40.6
ECA236G3954 Erigeron canadensis HOM05D001845 ORTHO05D001878 8.8e-37 158.7 364 38.7
Sabra13G0024500 Salix brachista HOM05D001845 ORTHO05D001878 2.0e-36 157.5 353 39.9
Eucgr.B01944 Eucalyptus grandis HOM05D001845 ORTHO05D001878 3.3e-36 156.8 295 42.4
Prupe.6G323900 Prunus persica HOM05D001845 ORTHO05D001878 3.3e-36 156.8 398 35.9
Gohir.A08G210000 Gossypium hirsutum HOM05D001845 ORTHO05D001878 9.7e-36 155.2 353 41.4
Gohir.D08G226900 Gossypium hirsutum HOM05D001845 ORTHO05D001878 4.8e-35 152.9 352 41.2
RcHm_v2.0_Chr3g0455171 Rosa chinensis HOM05D001845 ORTHO05D001878 1.1e-34 151.8 369 40.4
MBI18_g01959_MAGBIO Magnolia biondii HOM05D001845 ORTHO05D001878 2.4e-34 150.6 363 39.7
Nitab4.5_0003156g0070 Nicotiana tabacum HOM05D001845 ORTHO05D001878 5.3e-34 149.4 364 37.6
SGA_v2.0_scaffold80G25789 Striga asiatica HOM05D001845 ORTHO05D001878 1.3e-32 144.8 265 42.3
Gohir.A11G265500 Gossypium hirsutum HOM05D001845 ORTHO05D001878 2.2e-32 144.1 359 38.4
Nn4g25950 Nelumbo nucifera HOM05D001845 ORTHO05D001878 2.2e-32 144.1 371 36.7
FAN05G4497 Fragaria x ananassa HOM05D001965 ORTHO05D002112 8.5e-32 142.1 369 38.5
Gorai.004G240800 Gossypium raimondii HOM05D001845 ORTHO05D001878 1.1e-31 141.7 352 39.8
Gohir.D11G275700 Gossypium hirsutum HOM05D001845 ORTHO05D001878 4.2e-31 139.8 353 37.7
HanXRQChr11g0339591 Helianthus annuus HOM05D001845 ORTHO05D001878 5.5e-31 139.4 204 46.1
Lalb_Chr04g0260711 Lupinus albus HOM05D001845 ORTHO05D001878 1.6e-30 137.9 269 39.8
AUR62000810 Chenopodium quinoa HOM05D001845 ORTHO05D001878 2.1e-30 137.5 355 37.2
Gorai.007G297700 Gossypium raimondii HOM05D001845 ORTHO05D001878 2.1e-30 137.5 361 38.0
Lj1g0025433 Lotus japonicus HOM05D001845 ORTHO05D001878 3.6e-30 136.7 297 36.0
Lsat_1_v5_gn_9_86880 Lactuca sativa HOM05D001845 ORTHO05D001878 4.7e-30 136.3 348 36.8
Rhsim07G0183400 Rhododendron simsii HOM05D001845 ORTHO05D001878 1.8e-29 134.4 335 37.6
TAR633G2292 Trochodendron aralioides HOM05D001845 ORTHO05D001878 3.0e-29 133.7 274 42.3
Sc16g0008490 Simmondsia chinensis HOM05D001845 ORTHO05D001878 5.2e-29 132.9 366 36.1
FAN14G1216 Fragaria x ananassa HOM05D001965 ORTHO05D002112 6.7e-29 132.5 369 36.9
MELO3C004239.2 Cucumis melo HOM05D001845 ORTHO05D001878 8.8e-29 132.1 329 39.2
Sabra05G0035200 Salix brachista HOM05D001845 ORTHO05D001878 2.0e-28 131.0 349 39.8
CsaV3_2G006480 Cucumis sativus L. HOM05D001845 ORTHO05D001878 2.6e-28 130.6 326 38.3
ClCG02G015620 Citrullus lanatus HOM05D001845 ORTHO05D001878 4.4e-28 129.8 357 37.8
Sed0021528 Sechium edule HOM05D001845 ORTHO05D001878 4.4e-28 129.8 357 36.1
AUR62005158 Chenopodium quinoa HOM05D001845 ORTHO05D001878 5.7e-28 129.4 349 37.2
FAN02G4081 Fragaria x ananassa HOM05D001965 ORTHO05D002112 1.3e-27 128.3 367 36.0
Aqoxy2G03066 Aquilegia oxysepala HOM05D001845 ORTHO05D001878 1.1e-26 125.2 296 38.9
FvH4_6g06160 Fragaria vesca HOM05D001845 ORTHO05D001878 5.3e-26 122.9 369 35.8
BcaC04g22036 Brassica carinata HOM05D001845 ORTHO05D001878 1.6e-25 121.3 252 38.9
Glyma.19G234800 Glycine max HOM05D001845 ORTHO05D001878 3.5e-25 120.2 325 34.8
BcaB07g31110 Brassica carinata HOM05D001845 ORTHO05D001878 7.7e-25 119.0 264 38.6
A09p19240 Brassica napus HOM05D001845 ORTHO05D001878 7.7e-25 119.0 283 36.7
BraA09t37542Z Brassica rapa HOM05D001845 ORTHO05D001878 7.7e-25 119.0 283 36.7
BolC9t55342H Brassica oleracea HOM05D001845 ORTHO05D001878 1.7e-24 117.9 283 36.4
Ca_05811_v3 Cicer arietinum L. HOM05D001845 ORTHO05D001878 2.9e-24 117.1 249 38.2
PSO170G3888 Papaver somniferum HOM05D001845 ORTHO05D001878 5.0e-24 116.3 345 37.1
VMungo0540G0154 Vigna mungo HOM05D001845 ORTHO05D001878 5.0e-24 116.3 245 36.7
Thhalv10023272m.g Eutrema salsugineum HOM05D001845 ORTHO05D001878 2.5e-23 114.0 258 38.4
Phvul.006G091200 Phaseolus vulgaris HOM05D001845 ORTHO05D001878 3.2e-23 113.6 251 37.5
Glyma.03G237100 Glycine max HOM05D001845 ORTHO05D001878 4.2e-23 113.2 250 37.2
arahy.Tifrunner.gnm1.ann1.F7SKJA Arachis hypogaea HOM05D000005 ORTHO05D000012 7.2e-23 112.5 330 33.3
EL10Ac4g09370 Beta vulgaris HOM05D001845 ORTHO05D001878 9.4e-23 112.1 354 34.5
Medtr7g113360 Medicago truncatula HOM05D001845 ORTHO05D001878 1.6e-22 111.3 289 36.7
PSO210G5619 Papaver somniferum HOM05D001845 ORTHO05D001878 1.0e-21 108.6 355 38.3
AL1G65690 Arabidopsis lyrata HOM05D001845 ORTHO05D001878 2.3e-21 107.5 284 33.8
SpUn0004_0260 Schrenkiella parvula HOM05D001845 ORTHO05D001878 2.3e-21 107.5 245 40.0
C09p24250 Brassica napus HOM05D001845 ORTHO05D001878 3.0e-21 107.1 186 39.8
Psat0s2406g0200 Pisum sativum HOM05D001845 ORTHO05D001878 2.0e-20 104.4 304 33.2
Carub.0002s0804 Capsella rubella HOM05D001845 ORTHO05D001878 2.6e-20 104.0 234 38.0
TAR365G0654 Trochodendron aralioides HOM05D001845 ORTHO05D026223 3.3e-20 103.6 331 32.6
Atru.chr11.202 Acer truncatum HOM05D001845 ORTHO05D026223 3.7e-19 100.1 172 45.9
TPR.G33222 Trifolium pratense HOM05D001845 ORTHO05D001878 2.7e-17 94.0 290 33.4
Aa31LG2G11680 Aethionema arabicum HOM05D001845 ORTHO05D001878 5.9e-17 92.8 247 34.8
CARHR289670 Cardamine hirsuta HOM05D001845 ORTHO05D001878 1.3e-16 91.7 257 35.0
Zm00001eb094690 Zea mays HOM05D001845 ORTHO05D001878 4.2e-15 86.7 308 32.1
Ah.04g160340 Amaranthus hybridus HOM05D001845 ORTHO05D001878 2.7e-14 84.0 291 33.0
THA.LOC104805882 Tarenaya hassleriana HOM05D001845 ORTHO05D001878 8.0e-14 82.4 327 32.1
Os07g0404300 Oryza sativa ssp. japonica HOM05D001845 ORTHO05D001878 1.4e-13 81.6 362 29.6
CDE02G3862 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 6.8e-13 79.3 373 32.2
HPP92_001915 Vanilla planifolia HOM05D001845 ORTHO05D001878 1.5e-12 78.2 325 31.4
CDE08G0713 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 2.6e-12 77.4 383 30.8
TAR633G1507 Trochodendron aralioides HOM05D001845 ORTHO05D001878 3.4e-12 77.0 69 60.9
Migut.N02069 Erythranthe guttata HOM05D001845 ORTHO05D001878 4.8e-11 73.2 134 41.8
AT1G55040 Arabidopsis thaliana HOM05D001845 ORTHO05D001878 5.4e-10 69.7 342 31.3
Dinv05827 Davidia involucrata HOM05D001845 ORTHO05D026223 4.5e-09 66.6 45 75.6
SHI43581 Sapria himalayana HOM05D001845 ORTHO05D001878 8.6e-08 62.4 166 35.5
Atru.chr2.366 Acer truncatum HOM05D001845 ORTHO05D026223 1.1e-07 62.0 108 39.8
ATR0706G175 Amborella trichopoda HOM05D001845 ORTHO05D001878 3.6e-06 57.0 380 28.7


User provided reference genes

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