Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 3.9e-67 258.1 136 100.0
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-63 245.7 135 94.1
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 9.9e-63 243.4 136 91.9
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.9e-56 220.7 131 87.0
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.6e-52 208.0 121 89.3
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-50 203.4 126 86.5
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-37 159.5 112 76.8
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 3.0e-35 152.1 118 68.6
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 1.4e-32 143.3 131 60.3
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.0e-32 141.7 96 80.2
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 5.3e-32 141.4 114 63.2
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.6e-31 139.0 113 67.3
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 7.6e-31 137.5 98 77.6
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.0e-30 137.1 110 68.2
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.7e-30 136.3 125 61.6
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.7e-30 136.3 125 58.4
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.4e-29 133.3 121 58.7
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-29 132.5 95 77.9
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 4.2e-29 131.7 118 63.6
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 4.2e-29 131.7 131 52.7
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 4.2e-29 131.7 126 59.5
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 5.5e-29 131.3 118 59.3
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 9.3e-29 130.6 119 63.0
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 9.3e-29 130.6 109 63.3
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.6e-28 129.8 121 57.9
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 1.6e-28 129.8 110 63.6
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 2.1e-28 129.4 110 64.5
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 2.1e-28 129.4 111 64.0
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.1e-28 129.4 110 63.6
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 4.6e-28 128.3 110 60.0
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 4.6e-28 128.3 118 57.6
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 4.6e-28 128.3 130 56.2
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.0e-27 127.1 111 62.2
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 1.0e-27 127.1 118 56.8
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.0e-27 127.1 110 61.8
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.3e-27 126.7 116 57.8
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.3e-27 126.7 110 60.9
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.8e-27 126.3 113 62.8
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 2.3e-27 125.9 120 55.8
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 3.0e-27 125.6 131 55.7
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 3.9e-27 125.2 111 59.5
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 3.9e-27 125.2 110 61.8
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 5.1e-27 124.8 113 61.9
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 5.1e-27 124.8 117 59.0
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.7e-27 124.4 127 54.3
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 8.7e-27 124.0 113 61.9
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 8.7e-27 124.0 131 53.4
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.1e-26 123.6 113 61.9
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 1.5e-26 123.2 110 62.7
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 1.5e-26 123.2 133 51.9
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.9e-26 122.9 111 59.5
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.9e-26 122.9 121 54.5
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 1.9e-26 122.9 128 53.9
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 2.5e-26 122.5 116 54.3
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.5e-26 122.5 127 53.5
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 2.5e-26 122.5 116 56.9
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.5e-26 122.5 116 56.9
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.5e-26 122.5 116 56.9
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 3.3e-26 122.1 116 54.3
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 4.3e-26 121.7 112 59.8
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 5.7e-26 121.3 109 56.0
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.4e-26 120.9 111 58.6
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 7.4e-26 120.9 126 54.0
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 9.7e-26 120.6 112 59.8
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 9.7e-26 120.6 116 58.6
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 1.3e-25 120.2 110 61.8
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.6e-25 119.8 110 58.2
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.6e-25 119.8 124 53.2
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 2.8e-25 119.0 109 57.8
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 3.7e-25 118.6 112 58.0
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 8.2e-25 117.5 112 58.0
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 8.2e-25 117.5 110 52.7
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 8.2e-25 117.5 118 55.9
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.4e-24 116.7 110 60.9
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.8e-24 116.3 114 55.3
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 4.1e-24 115.2 108 61.1
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 4.1e-24 115.2 107 58.9
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.5e-23 113.2 113 55.8
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.0e-22 110.5 125 52.0
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.0e-22 110.5 114 53.5
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.3e-22 110.2 118 55.1
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.3e-22 110.2 117 54.7
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 2.9e-22 109.0 121 51.2
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 2.9e-22 109.0 106 59.4
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 5.0e-22 108.2 106 60.4
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 6.5e-22 107.8 105 57.1
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 7.2e-21 104.4 106 56.6
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.7e-20 102.4 113 49.6
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 4.6e-20 101.7 104 51.9
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 6.1e-20 101.3 121 46.3
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 7.9e-20 100.9 113 48.7
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.0e-19 100.5 104 51.9
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 1.0e-19 100.5 117 48.7
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.4e-19 100.1 111 54.1
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.8e-19 99.8 121 45.5
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.8e-19 99.8 121 45.5
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.8e-19 99.8 103 54.4
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 2.3e-19 99.4 121 46.3
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 2.3e-19 99.4 121 46.3
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 2.3e-19 99.4 118 45.8
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.0e-19 99.0 113 48.7
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 3.0e-19 99.0 121 45.5
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 6.7e-19 97.8 106 51.9
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 6.7e-19 97.8 106 52.8
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 6.7e-19 97.8 111 49.5
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 8.8e-19 97.4 106 51.9
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.5e-18 96.7 121 47.9
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.9e-18 96.3 115 48.7
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 1.9e-18 96.3 106 51.9
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 1.9e-18 96.3 106 51.9
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.9e-18 96.3 115 48.7
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 5.7e-18 94.7 106 50.9
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 5.7e-18 94.7 107 52.3
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.7e-17 93.2 121 45.5
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 9.1e-16 87.4 105 53.3
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.2e-15 87.0 104 53.8
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 4.5e-15 85.1 107 48.6
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.8e-14 82.0 89 52.8
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 3.2e-13 79.0 50 76.0
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.6e-12 75.5 84 50.0
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.4e-11 73.6 117 41.0
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 5.1e-11 71.6 98 43.9
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.8e-06 55.5 50 58.0


User provided reference genes

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