Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 5.5e-226 787.3 408 100.0
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.4e-208 729.6 406 93.6
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 3.1e-184 648.7 332 96.4
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.4e-149 532.7 362 74.6
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.0e-147 525.8 359 74.4
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 3.7e-137 492.3 411 62.5
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 8.2e-137 491.1 357 70.9
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 8.2e-137 491.1 357 70.9
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 7.6e-135 484.6 404 62.9
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 3.8e-134 482.3 411 63.7
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 4.3e-130 468.8 350 68.9
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.6e-129 466.8 407 63.1
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 1.4e-125 453.8 408 62.5
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.6e-124 450.3 405 57.5
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 3.6e-124 449.1 354 64.7
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 7.9e-124 448.0 358 62.8
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 9.7e-122 441.0 410 54.4
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 2.8e-121 439.5 405 55.1
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.2e-121 438.0 360 61.1
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.1e-120 437.6 405 54.8
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 1.4e-120 437.2 409 56.5
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 2.6e-119 433.0 402 55.2
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 5.9e-119 431.8 361 58.2
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 1.3e-118 430.6 408 58.3
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.3e-118 430.6 409 55.5
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 3.2e-117 426.0 359 59.1
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 4.2e-117 425.6 359 57.7
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 3.6e-116 422.5 360 59.7
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 6.1e-116 421.8 409 55.0
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.0e-115 421.0 360 59.2
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.1e-114 417.5 413 55.2
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 5.7e-114 415.2 361 57.1
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.4e-112 409.8 344 59.3
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 7.0e-112 408.3 408 52.2
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 1.5e-111 407.1 407 52.8
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.5e-111 407.1 406 53.0
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 1.5e-111 407.1 406 54.2
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 2.0e-111 406.8 347 59.4
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.0e-111 406.8 408 52.9
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.5e-111 406.0 345 59.4
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 3.5e-111 406.0 410 55.6
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 5.9e-111 405.2 406 53.2
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.3e-110 404.1 344 58.7
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 1.7e-110 403.7 408 50.7
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 3.8e-110 402.5 407 53.1
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 5.0e-110 402.1 410 55.6
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.1e-109 401.0 407 53.3
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 3.2e-109 399.4 418 55.0
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 7.2e-109 398.3 406 54.7
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 8.0e-108 394.8 409 51.3
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 3.0e-107 392.9 412 51.9
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 3.9e-107 392.5 315 69.2
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 3.9e-107 392.5 406 52.7
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 5.2e-107 392.1 407 51.6
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 5.2e-107 392.1 407 51.6
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 6.7e-107 391.7 408 52.7
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 6.7e-107 391.7 352 56.8
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.1e-106 391.0 407 51.4
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.5e-106 390.6 408 51.2
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 4.4e-106 389.0 346 57.8
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 4.4e-106 389.0 358 55.3
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 4.4e-106 389.0 335 60.0
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 5.7e-106 388.7 350 56.6
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 9.7e-106 387.9 406 52.5
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.3e-105 387.5 344 57.0
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 2.2e-105 386.7 352 54.5
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 2.2e-105 386.7 410 50.5
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 2.8e-105 386.3 344 57.3
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 3.7e-105 386.0 409 53.3
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 3.7e-105 386.0 409 53.3
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 4.8e-105 385.6 424 53.8
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 6.3e-105 385.2 409 52.8
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 6.3e-105 385.2 410 53.4
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 6.3e-105 385.2 356 55.1
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 1.1e-104 384.4 407 51.4
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 1.8e-104 383.6 354 56.2
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 7.0e-104 381.7 407 51.1
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 9.1e-104 381.3 406 51.7
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 9.1e-104 381.3 341 57.8
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 5.9e-103 378.6 348 54.9
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 7.7e-103 378.3 347 55.9
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 8.5e-102 374.8 352 54.5
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.5e-101 374.0 341 55.7
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 2.5e-101 373.2 407 51.4
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 7.2e-101 371.7 350 52.6
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 4.7e-100 369.0 318 56.6
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 4.4e-98 362.5 358 50.0
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 3.7e-97 359.4 360 52.2
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 2.3e-91 340.1 260 65.0
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 5.2e-91 339.0 331 52.0
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 7.5e-90 335.1 346 46.8
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.4e-88 330.9 271 62.4
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 5.4e-80 302.4 270 55.6
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 1.2e-79 301.2 262 56.9
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.3e-73 281.2 264 52.3
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 4.1e-72 276.2 357 43.1
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 2.9e-65 253.4 174 72.4
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 9.5e-61 238.4 333 42.6
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 9.9e-50 201.8 294 41.5
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 7.8e-47 192.2 369 32.0
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 1.7e-46 191.0 346 35.0
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.5e-45 188.0 357 35.6
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.6e-44 184.5 192 51.6
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.8e-43 181.0 182 56.6
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 6.9e-43 179.1 176 55.7
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.7e-41 174.5 181 55.8
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.8e-41 173.3 182 55.5
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 2.3e-30 137.5 362 29.3
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 2.5e-16 90.9 85 56.5
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 4.2e-16 90.1 129 40.3
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 7.2e-08 62.8 43 62.8
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 5.1e-06 56.6 46 60.9


User provided reference genes

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