Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.7e-114 416.0 213 100.0
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.1e-91 339.3 205 84.4
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 3.7e-88 328.6 242 73.1
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 2.0e-86 322.8 239 73.6
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 4.9e-85 318.2 246 71.1
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 4.9e-85 318.2 243 71.2
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 8.4e-85 317.4 243 70.4
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 8.4e-85 317.4 242 71.5
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 1.1e-84 317.0 259 68.0
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 1.1e-84 317.0 243 72.4
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 5.5e-84 314.7 243 70.4
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 2.7e-83 312.4 243 68.7
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 3.5e-83 312.0 246 70.3
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 4.6e-83 311.6 243 69.1
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 4.6e-83 311.6 241 69.7
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 7.9e-83 310.8 237 71.3
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 7.9e-83 310.8 242 69.8
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.0e-82 310.5 243 71.2
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.0e-82 310.5 246 70.7
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.3e-82 310.1 246 68.3
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 1.8e-82 309.7 208 77.4
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.8e-82 309.7 243 69.5
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 2.3e-82 309.3 244 69.3
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 2.3e-82 309.3 246 68.7
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 2.3e-82 309.3 243 67.5
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 3.9e-82 308.5 243 67.5
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 3.9e-82 308.5 243 67.1
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 8.7e-82 307.4 244 68.9
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 8.7e-82 307.4 244 68.0
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 1.9e-81 306.2 246 68.7
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.9e-81 306.2 246 69.5
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.5e-81 305.8 242 68.6
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.5e-81 305.8 243 67.9
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 5.7e-81 304.7 246 69.5
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 5.7e-81 304.7 243 65.8
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 9.6e-81 303.9 243 69.1
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 9.6e-81 303.9 243 67.5
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.3e-80 303.5 243 68.3
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.1e-80 302.8 240 68.3
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 2.1e-80 302.8 247 68.4
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 2.1e-80 302.8 242 68.6
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.8e-80 302.4 243 68.3
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 4.8e-80 301.6 246 68.3
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.8e-80 301.6 246 67.9
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 6.2e-80 301.2 242 68.2
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 6.2e-80 301.2 247 67.2
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 8.2e-80 300.8 246 67.1
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.1e-79 300.4 246 67.9
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.1e-79 300.4 239 68.2
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.1e-79 300.4 246 67.5
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 1.1e-79 300.4 243 66.7
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.4e-79 300.1 246 65.4
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.4e-79 300.1 246 66.3
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.4e-79 300.1 242 67.8
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 1.8e-79 299.7 241 68.0
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.8e-79 299.7 243 67.9
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 2.4e-79 299.3 243 67.1
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 3.1e-79 298.9 243 65.8
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 3.1e-79 298.9 242 67.8
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 4.1e-79 298.5 243 65.8
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 4.1e-79 298.5 246 67.5
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 5.3e-79 298.1 242 67.4
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 5.3e-79 298.1 239 69.0
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 6.9e-79 297.7 246 66.7
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.2e-78 297.0 246 65.4
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 1.2e-78 297.0 243 67.1
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 2.6e-78 295.8 242 65.7
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.6e-78 295.8 242 67.4
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 3.4e-78 295.4 246 65.9
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 3.4e-78 295.4 246 65.9
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 4.5e-78 295.0 243 65.0
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 5.8e-78 294.7 242 68.2
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 7.6e-78 294.3 246 66.3
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.0e-77 293.9 237 67.9
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.0e-77 293.9 242 66.9
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.0e-77 293.9 243 65.4
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.3e-77 293.5 243 66.7
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 5.0e-77 291.6 246 66.7
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 6.5e-77 291.2 246 63.8
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.9e-76 289.7 242 64.9
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 4.2e-76 288.5 245 64.9
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 2.7e-75 285.8 243 65.8
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 4.6e-75 285.0 243 65.0
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 6.1e-75 284.6 263 61.2
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 1.8e-74 283.1 252 62.7
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 2.3e-74 282.7 241 65.6
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 2.3e-74 282.7 241 65.1
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 2.3e-74 282.7 241 65.1
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.3e-74 282.7 245 64.1
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 2.3e-74 282.7 242 65.7
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 2.3e-74 282.7 243 65.4
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 3.0e-74 282.3 241 65.1
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 3.0e-74 282.3 244 64.3
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 3.0e-74 282.3 242 63.6
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 3.0e-74 282.3 238 66.0
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 3.9e-74 282.0 241 65.1
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 3.9e-74 282.0 243 63.8
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 5.1e-74 281.6 241 65.1
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 5.1e-74 281.6 241 65.1
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 6.7e-74 281.2 241 63.9
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.1e-73 280.4 281 58.0
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.5e-73 280.0 241 64.7
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.9e-73 279.6 241 63.9
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 1.9e-73 279.6 241 64.7
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 3.3e-73 278.9 239 65.3
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 3.7e-72 275.4 239 61.5
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 6.3e-72 274.6 241 63.1
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 8.2e-72 274.2 244 60.2
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 8.2e-72 274.2 238 63.4
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.4e-71 273.5 243 61.7
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 3.1e-71 272.3 146 90.4
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.5e-70 270.0 242 62.8
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 2.6e-70 269.2 239 61.5
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 4.5e-70 268.5 242 60.3
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 5.9e-70 268.1 246 61.4
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.2e-69 266.2 242 60.7
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 2.9e-69 265.8 255 60.0
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.9e-68 263.1 241 61.0
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 4.2e-68 261.9 278 54.7
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 7.9e-67 257.7 240 58.8
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 2.3e-66 256.1 239 59.8
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 2.3e-66 256.1 239 59.4
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 2.0e-65 253.1 154 79.2
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 2.5e-65 252.7 169 75.7
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 4.3e-65 251.9 240 57.1
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.8e-64 249.2 146 82.9
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.1e-63 247.3 217 64.1
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 2.6e-62 242.7 200 67.0
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 2.6e-62 242.7 255 58.8
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.4e-58 230.3 142 82.4
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.4e-58 230.3 239 57.7
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.6e-57 226.1 240 52.9
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 5.7e-57 224.9 161 78.3
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 2.4e-55 219.5 240 53.3
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 3.2e-52 209.1 236 48.3
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 3.6e-51 205.7 246 53.3
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.3e-49 199.1 205 59.5
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 2.0e-46 189.9 108 83.3
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 9.4e-44 181.0 451 32.6
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 2.7e-43 179.5 236 43.6
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.0e-42 176.0 161 56.5
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.0e-34 149.1 84 82.1
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.1e-31 139.4 111 61.3
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 1.2e-30 137.5 150 46.7
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 3.3e-28 129.4 161 40.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.7e-22 109.8 108 58.3
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 4.7e-19 99.0 161 40.4
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 4.7e-19 99.0 86 61.6
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 9.8e-17 91.3 72 66.7
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 2.1e-11 73.6 84 44.0
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 5.8e-09 65.5 43 74.4
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 4.9e-08 62.4 146 28.1
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.4e-07 60.8 57 63.2
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 9.2e-07 58.2 54 63.0


User provided reference genes

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