Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C655T7 Lonicera japonica HOM05D003760 ORTHO05D004672 9.7e-97 357.1 216 100.0
Hma1.2p1_0121F.1_g057510 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 4.9e-80 301.6 216 77.8
Cc02_g29710 Coffea canephora HOM05D003760 ORTHO05D004672 2.4e-79 299.3 216 75.9
FvH4_7g02780 Fragaria vesca HOM05D003760 ORTHO05D004672 4.5e-78 295.0 215 74.9
FAN06G0531 Fragaria x ananassa HOM05D003760 ORTHO05D004672 4.5e-78 295.0 215 74.9
Actinidia19460 Actinidia chinensis HOM05D003760 ORTHO05D004672 1.3e-77 293.5 216 76.9
RcHm_v2.0_Chr1g0322021 Rosa chinensis HOM05D003760 ORTHO05D004672 2.9e-77 292.4 216 75.0
FAN03G0077 Fragaria x ananassa HOM05D003760 ORTHO05D004672 6.6e-77 291.2 216 74.1
FAN10G4281 Fragaria x ananassa HOM05D003760 ORTHO05D004672 6.6e-77 291.2 216 74.1
FAN01G2043 Fragaria x ananassa HOM05D003760 ORTHO05D004672 8.6e-77 290.8 216 74.1
Potri.003G199301 Populus trichocarpa HOM05D003760 ORTHO05D004672 1.5e-76 290.0 216 77.3
Ciclev10005415m.g Citrus clementina HOM05D003760 ORTHO05D004672 1.9e-76 289.7 216 84.7
Manes.04G165800 Manihot esculenta HOM05D003760 ORTHO05D004672 1.9e-76 289.7 216 75.0
Prupe.2G032300 Prunus persica HOM05D003760 ORTHO05D004672 3.3e-76 288.9 216 77.3
DCAR_022349 Daucus carota HOM05D003760 ORTHO05D004672 5.6e-76 288.1 217 74.7
Dinv32036 Davidia involucrata HOM05D003760 ORTHO05D004672 9.5e-76 287.3 216 84.3
CSS0033000 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 2.1e-75 286.2 216 84.7
Cfa006289 Carpinus fangiana HOM05D003760 ORTHO05D004672 2.8e-75 285.8 216 74.1
Potri.001G026100 Populus trichocarpa HOM05D003760 ORTHO05D004672 2.8e-75 285.8 217 82.5
Sed0003663 Sechium edule HOM05D003760 ORTHO05D004672 3.6e-75 285.4 216 78.2
Ciclev10001295m.g Citrus clementina HOM05D003760 ORTHO05D004672 4.7e-75 285.0 218 83.5
Dinv09260 Davidia involucrata HOM05D003760 ORTHO05D004672 6.1e-75 284.6 219 82.6
GSVIVG01000658001 Vitis vinifera HOM05D003760 ORTHO05D004672 8.0e-75 284.3 216 75.0
Potri.T126106 Populus trichocarpa HOM05D003760 ORTHO05D004672 1.8e-74 283.1 218 81.7
Thecc.10G166200 Theobroma cacao HOM05D003760 ORTHO05D004672 1.8e-74 283.1 216 73.6
ClCG01G007720 Citrullus lanatus HOM05D003760 ORTHO05D004672 4.0e-74 282.0 216 81.5
MSTRG.20523 Avicennia marina HOM05D003760 ORTHO05D004672 5.2e-74 281.6 216 72.2
Sabra03G0148000 Salix brachista HOM05D003760 ORTHO05D004672 5.2e-74 281.6 219 74.9
TWI63G0088 Tripterygium wilfordii HOM05D003760 ORTHO05D004672 6.8e-74 281.2 216 81.9
MELO3C005125.2 Cucumis melo HOM05D003760 ORTHO05D004672 1.2e-73 280.4 216 74.1
MBI13_g01615_MAGBIO Magnolia biondii HOM05D003760 ORTHO05D004672 1.2e-73 280.4 216 73.1
Oeu015685.1 Olea europaea HOM05D003760 ORTHO05D004672 1.2e-73 280.4 216 71.8
Sabra01G0019300 Salix brachista HOM05D003760 ORTHO05D004672 1.5e-73 280.0 217 73.3
Duzib114G0596 Durio zibethinus HOM05D003760 ORTHO05D004672 2.0e-73 279.6 216 72.7
ECA233G5140 Erigeron canadensis HOM05D003760 ORTHO05D004672 2.0e-73 279.6 216 71.3
Migut.B01218 Erythranthe guttata HOM05D003760 ORTHO05D004672 4.4e-73 278.5 216 77.8
Haze_03069 Corylus avellana HOM05D003760 ORTHO05D004672 5.7e-73 278.1 216 75.0
MSTRG.16994 Avicennia marina HOM05D003760 ORTHO05D004672 7.5e-73 277.7 216 71.8
Eucgr.G03244 Eucalyptus grandis HOM05D003760 ORTHO05D004672 7.5e-73 277.7 216 72.7
Hma1.2p1_1396F.1_g280580 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 7.5e-73 277.7 216 72.7
Hund21541 Selenicereus undatus HOM05D003760 ORTHO05D004672 7.5e-73 277.7 216 82.4
CsaV3_5G024790 Cucumis sativus L. HOM05D003760 ORTHO05D004672 9.8e-73 277.3 216 73.1
QL04p014453 Quercus lobata HOM05D003760 ORTHO05D004672 1.3e-72 276.9 216 71.3
QL04p014818 Quercus lobata HOM05D003760 ORTHO05D004672 1.3e-72 276.9 216 71.3
CAN.G476.4 Capsicum annuum HOM05D003760 ORTHO05D004672 1.7e-72 276.6 213 73.2
arahy.Tifrunner.gnm1.ann1.88C8QI Arachis hypogaea HOM05D003760 ORTHO05D004672 2.2e-72 276.2 216 71.3
arahy.Tifrunner.gnm1.ann1.R8F3HD Arachis hypogaea HOM05D003760 ORTHO05D004672 2.2e-72 276.2 216 71.3
Rhsim07G0066200 Rhododendron simsii HOM05D003760 ORTHO05D004672 2.9e-72 275.8 228 71.1
SGA_v2.0_scaffold124G33635 Striga asiatica HOM05D003760 ORTHO05D004672 2.9e-72 275.8 216 69.4
CiPaw.13G012300 Carya illinoinensis HOM05D003760 ORTHO05D004672 3.7e-72 275.4 216 75.9
EL10Ac1g02286 Beta vulgaris HOM05D003760 ORTHO05D004672 4.9e-72 275.0 216 69.4
Cfa010888 Carpinus fangiana HOM05D003760 ORTHO05D004672 4.9e-72 275.0 216 73.1
Cpa.g.sc223.12 Carica papaya HOM05D003760 ORTHO05D004672 6.4e-72 274.6 216 80.1
TAR633G0271 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.1e-71 273.9 216 70.4
PGR031G0954 Punica granatum HOM05D003760 ORTHO05D004672 1.4e-71 273.5 216 81.0
TAR633G2507 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.4e-71 273.5 216 69.9
TAR636G0376 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.4e-71 273.5 216 71.3
Nitab4.5_0001681g0070 Nicotiana tabacum HOM05D003760 ORTHO05D004672 3.2e-71 272.3 221 78.7
Lsat_1_v5_gn_8_34020 Lactuca sativa HOM05D003760 ORTHO05D004672 4.1e-71 271.9 216 70.8
Ah.11g039100 Amaranthus hybridus HOM05D003760 ORTHO05D004672 5.4e-71 271.6 216 80.6
Nn2g14898 Nelumbo nucifera HOM05D003760 ORTHO05D004672 7.0e-71 271.2 216 69.4
Lj3g0013265 Lotus japonicus HOM05D003760 ORTHO05D004672 1.2e-70 270.4 216 70.8
AUR62033839 Chenopodium quinoa HOM05D003760 ORTHO05D004672 1.6e-70 270.0 216 72.2
CiPaw.14G006600 Carya illinoinensis HOM05D003760 ORTHO05D004672 2.0e-70 269.6 216 72.2
Ca_02468_v3 Cicer arietinum L. HOM05D003760 ORTHO05D004672 2.0e-70 269.6 216 71.8
Sc10g0004370 Simmondsia chinensis HOM05D003760 ORTHO05D004672 2.7e-70 269.2 216 80.6
Gohir.D05G283000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 3.5e-70 268.9 216 74.1
Gorai.009G296500 Gossypium raimondii HOM05D003760 ORTHO05D004672 3.5e-70 268.9 216 74.1
Medtr5g031790 Medicago truncatula HOM05D003760 ORTHO05D004672 5.9e-70 268.1 216 70.8
Lsat_1_v5_gn_5_36241 Lactuca sativa HOM05D003760 ORTHO05D004672 1.0e-69 267.3 215 70.7
Sed0017009 Sechium edule HOM05D003760 ORTHO05D004672 1.0e-69 267.3 216 70.8
Sopen11g001570 Solanum pennellii HOM05D003760 ORTHO05D004672 1.3e-69 266.9 213 70.0
Gohir.A05G281000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 2.3e-69 266.2 216 74.1
Solyc11g005600.2 Solanum lycopersicum HOM05D003760 ORTHO05D004672 3.0e-69 265.8 213 75.6
Atru.chr12.1379 Acer truncatum HOM05D003760 ORTHO05D004672 6.6e-69 264.6 215 78.6
vmacro22865 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 8.6e-69 264.2 254 63.0
COL.COLO4_21460 Corchorus olitorius HOM05D003760 ORTHO05D004672 1.1e-68 263.8 210 71.9
THA.LOC104818980 Tarenaya hassleriana HOM05D003760 ORTHO05D004672 3.3e-68 262.3 216 68.1
PSO339G5967 Papaver somniferum HOM05D003760 ORTHO05D004672 5.6e-68 261.5 216 67.1
Phvul.004G157800 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 2.1e-67 259.6 216 76.4
CARHR081950 Cardamine hirsuta HOM05D003760 ORTHO05D004672 3.6e-67 258.8 216 65.7
Thhalv10007798m.g Eutrema salsugineum HOM05D003760 ORTHO05D004672 1.0e-66 257.3 216 65.7
PSO384G0478 Papaver somniferum HOM05D003760 ORTHO05D004672 4.0e-66 255.4 216 68.1
AT3G07300 Arabidopsis thaliana HOM05D003760 ORTHO05D004672 1.2e-65 253.8 216 65.7
BolC5t34655H Brassica oleracea HOM05D003760 ORTHO05D004672 2.6e-65 252.7 218 66.1
BraA05t22819Z Brassica rapa HOM05D003760 ORTHO05D004672 4.4e-65 251.9 218 66.1
Phvul.005G029500 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 4.4e-65 251.9 216 67.6
AL3G18600 Arabidopsis lyrata HOM05D003760 ORTHO05D004672 5.8e-65 251.5 216 64.8
Sp3g06250 Schrenkiella parvula HOM05D003760 ORTHO05D004672 1.3e-64 250.4 216 64.8
Aa31LG5G17870 Aethionema arabicum HOM05D003760 ORTHO05D004672 1.7e-64 250.0 215 65.1
Aqoxy2G00338 Aquilegia oxysepala HOM05D003760 ORTHO05D004672 1.7e-64 250.0 217 67.7
Carub.0003s0684 Capsella rubella HOM05D003760 ORTHO05D004672 3.7e-64 248.8 216 64.4
MD07G1036800 Malus domestica HOM05D003760 ORTHO05D004672 4.9e-64 248.4 198 81.3
C05p60000 Brassica napus HOM05D003760 ORTHO05D004672 8.3e-64 247.7 217 64.5
A05p40900 Brassica napus HOM05D003760 ORTHO05D004672 1.1e-63 247.3 217 65.0
CDE07G1968 Ceratophyllum demersum HOM05D003760 ORTHO05D004672 5.4e-63 245.0 216 65.7
unitig_578.g16298 Utricularia gibba HOM05D003760 ORTHO05D004672 7.0e-63 244.6 215 64.7
Glyma.11G154300 Glycine max HOM05D003760 ORTHO05D004672 9.2e-63 244.2 216 65.3
HPP92_016595 Vanilla planifolia HOM05D003760 ORTHO05D004672 7.8e-62 241.1 216 68.1
BcaB04g21296 Brassica carinata HOM05D003760 ORTHO05D004672 1.7e-61 240.0 219 62.6
AUR62043363 Chenopodium quinoa HOM05D003760 ORTHO05D004672 3.9e-61 238.8 215 64.7
ATR0075G007 Amborella trichopoda HOM05D003760 ORTHO05D004672 1.9e-60 236.5 216 63.0
BNapus_Darmor_BZH_scaffold_109p00130 Brassica napus HOM05D003760 ORTHO05D004672 2.5e-60 236.1 239 58.2
Peaxi162Scf00602g00420 Petunia axillaris HOM05D003760 ORTHO05D004672 3.6e-59 232.3 218 61.5
SEGI_21043 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 8.1e-59 231.1 216 60.2
CAN.G220.44 Capsicum annuum HOM05D003760 ORTHO05D004672 1.4e-58 230.3 218 60.1
Nitab4.5_0001425g0120 Nicotiana tabacum HOM05D003760 ORTHO05D004672 8.9e-58 227.6 219 61.2
Lalb_Chr08g0234711 Lupinus albus HOM05D003760 ORTHO05D004672 1.2e-57 227.3 216 64.8
Nitab4.5_0006936g0020 Nicotiana tabacum HOM05D003760 ORTHO05D004672 4.4e-57 225.3 219 60.7
Solyc09g090400.4 Solanum lycopersicum HOM05D003760 ORTHO05D004672 1.3e-56 223.8 218 59.2
HanXRQChr12g0382881 Helianthus annuus HOM05D003760 ORTHO05D004672 1.7e-56 223.4 220 69.5
VMungo0464G1704 Vigna mungo HOM05D003760 ORTHO05D004672 1.7e-56 223.4 215 70.2
PGSC0003DMG400017207 Solanum tuberosum HOM05D003760 ORTHO05D004672 2.9e-56 222.6 218 61.0
Sopen09g033310 Solanum pennellii HOM05D003760 ORTHO05D004672 1.1e-55 220.7 218 58.7
Glyma.09G185000 Glycine max HOM05D003760 ORTHO05D004672 1.4e-55 220.3 215 69.3
Glyma.07G090900 Glycine max HOM05D003760 ORTHO05D004672 4.1e-55 218.8 215 68.4
SalBow5G2833 Salvia bowleyana HOM05D003760 ORTHO05D004672 3.9e-53 212.2 166 69.9
SEGI_24692 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 1.1e-52 210.7 216 56.9
Zm00001eb223560 Zea mays HOM05D003760 ORTHO05D004672 1.9e-52 209.9 217 58.1
Zm00001eb048720 Zea mays HOM05D003760 ORTHO05D004672 2.5e-52 209.5 217 58.1
Nitab4.5_0000320g0110 Nicotiana tabacum HOM05D003760 ORTHO05D004672 1.6e-51 206.8 175 66.3
AUR62042161 Chenopodium quinoa HOM05D003760 ORTHO05D004672 6.2e-51 204.9 215 58.6
Pp3c21_14090 Physcomitrium patens HOM05D003760 ORTHO05D004672 8.1e-51 204.5 217 54.4
Mapoly0105s0017 Marchantia polymorpha HOM05D003760 ORTHO05D004672 1.2e-49 200.7 216 54.2
Actinidia39916 Actinidia chinensis HOM05D003760 ORTHO05D004672 1.5e-49 200.3 215 56.3
Atru.chr4.1982 Acer truncatum HOM05D003760 ORTHO05D004672 5.8e-49 198.4 216 56.9
Potri.010G068600 Populus trichocarpa HOM05D003760 ORTHO05D004672 5.8e-49 198.4 213 54.9
AagrBONN_evm.TU.Sc2ySwM_344.807 Anthoceros agrestis HOM05D003760 ORTHO05D004672 1.3e-48 197.2 216 51.9
Pp3c10_19890 Physcomitrium patens HOM05D003760 ORTHO05D004672 2.2e-48 196.4 217 60.8
Rhsim02G0042300 Rhododendron simsii HOM05D003760 ORTHO05D004672 2.9e-48 196.1 215 54.0
vmacro15463 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 8.4e-48 194.5 215 55.3
Sabra10G0038400 Salix brachista HOM05D003760 ORTHO05D004672 2.4e-47 193.0 214 54.2
MD02G1290200 Malus domestica HOM05D003760 ORTHO05D004672 3.5e-46 189.1 197 69.0
QL06p019987 Quercus lobata HOM05D003760 ORTHO05D004672 1.5e-44 183.7 208 53.8
SMO340G0195 Selaginella moellendorffii HOM05D003760 ORTHO05D004672 3.3e-44 182.6 217 50.7
COL.COLO4_15929 Corchorus olitorius HOM05D003760 ORTHO05D004672 1.4e-42 177.2 213 53.5
TPR.G36778 Trifolium pratense HOM05D003760 ORTHO05D004672 2.4e-42 176.4 219 53.4
BraA01t04387Z Brassica rapa HOM05D003760 ORTHO05D004672 1.2e-41 174.1 159 62.3
BolC1t05559H Brassica oleracea HOM05D003760 ORTHO05D004672 3.4e-41 172.6 159 61.6
Psat6g019840 Pisum sativum HOM05D003760 ORTHO05D004672 9.9e-41 171.0 147 68.0
Prupe.1G044800 Prunus persica HOM05D003760 ORTHO05D004672 2.2e-40 169.9 216 50.5
Ciclev10006759m.g Citrus clementina HOM05D003760 ORTHO05D004672 4.6e-38 162.2 215 48.4
Duzib128G1330 Durio zibethinus HOM05D003760 ORTHO05D004672 3.9e-37 159.1 147 63.3
RcHm_v2.0_Chr4g0394571 Rosa chinensis HOM05D003760 ORTHO05D004672 4.3e-36 155.6 215 46.5
Os10g0392700 Oryza sativa ssp. japonica HOM05D003760 ORTHO05D004672 1.3e-35 154.1 162 58.0
FvH4_4g04150 Fragaria vesca HOM05D003760 ORTHO05D004672 2.2e-32 143.3 215 45.1
Sabra12G0005200 Salix brachista HOM05D003760 ORTHO05D020255 6.4e-32 141.7 91 80.2
RcHm_v2.0_Chr1g0322881 Rosa chinensis HOM05D003760 ORTHO05D004672 2.4e-31 139.8 94 83.0
FAN12G0242 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.3e-29 133.3 215 41.9
CSS0016471 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 9.0e-26 121.3 140 55.0
FAN17G2831 Fragaria x ananassa HOM05D003760 ORTHO05D004672 4.5e-25 119.0 215 39.1
FAN03G0469 Fragaria x ananassa HOM05D003760 ORTHO05D020255 4.9e-24 115.5 69 82.6
Psat3g180400 Pisum sativum HOM05D003760 ORTHO05D020255 1.5e-20 104.0 69 78.3
Cc03_g05880 Coffea canephora HOM05D003760 ORTHO05D020255 1.9e-20 103.6 116 52.6
FAN22G1391 Fragaria x ananassa HOM05D003760 ORTHO05D004672 7.4e-20 101.7 147 44.2
CSS0026575 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D020255 1.3e-19 100.9 76 68.4
Psat6g019960 Pisum sativum HOM05D003760 ORTHO05D004672 4.0e-18 95.9 216 39.4
Peaxi162Scf01732g00023 Petunia axillaris HOM05D003760 ORTHO05D004672 5.3e-18 95.5 65 80.0
CDE04G3266 Ceratophyllum demersum HOM05D000656 ORTHO05D000871 2.9e-16 89.7 69 72.5
RcHm_v2.0_Chr1g0322871 Rosa chinensis HOM05D003760 ORTHO05D050733 2.9e-16 89.7 60 81.7
Oeu035508.1 Olea europaea HOM05D003760 ORTHO05D020255 3.2e-15 86.3 68 61.8
MD13G1218100 Malus domestica HOM05D003760 ORTHO05D020255 2.7e-14 83.2 73 60.3
GSVIVG01024428001 Vitis vinifera HOM05D003760 ORTHO05D050733 6.0e-14 82.0 87 56.3
FAN15G2228 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.3e-13 80.1 125 46.4
FAN11G1373 Fragaria x ananassa HOM05D004783 ORTHO05D005581 8.7e-13 78.2 125 45.6
PRCOL_00001306 Prasinoderma coloniale HOM05D003760 ORTHO05D004672 1.9e-12 77.0 242 31.8
CBR_g42076 Chara braunii HOM05D003760 ORTHO05D004672 2.8e-11 73.2 82 43.9
MCO16G454 Micromonas commoda HOM05D003760 ORTHO05D004672 3.1e-10 69.7 85 44.7
Cre16.g662902 Chlamydomonas reinhardtii HOM05D003760 ORTHO05D004672 1.2e-09 67.8 265 27.2
Actinidia06249 Actinidia chinensis HOM05D003760 ORTHO05D004672 5.0e-08 62.4 37 81.1
RcHm_v2.0_Chr1g0313641 Rosa chinensis HOM05D003760 ORTHO05D004672 1.4e-07 60.8 83 48.2


User provided reference genes

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