Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 3.3e-214 748.0 361 100.0
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 9.3e-169 597.0 352 81.8
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 3.0e-167 592.0 357 79.3
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 3.3e-166 588.6 362 78.2
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.8e-165 585.5 355 78.9
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 8.2e-165 583.9 365 77.5
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 2.4e-164 582.4 368 76.9
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 6.9e-164 580.9 356 78.7
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 9.0e-164 580.5 366 76.5
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 2.0e-163 579.3 365 77.5
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 2.0e-163 579.3 365 77.3
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 2.0e-163 579.3 352 78.4
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 5.9e-163 577.8 353 78.8
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 1.7e-162 576.2 353 77.9
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 2.9e-162 575.5 352 78.1
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 3.2e-161 572.0 352 77.8
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 4.2e-161 571.6 363 75.2
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.2e-160 570.1 366 76.0
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.6e-160 569.7 353 77.1
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 2.1e-160 569.3 352 77.3
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 3.6e-160 568.5 351 78.1
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.6e-160 568.5 358 76.0
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 3.6e-160 568.5 357 77.0
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 7.9e-160 567.4 382 72.5
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.0e-159 567.0 352 77.0
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.0e-159 567.0 357 75.4
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 2.3e-159 565.8 355 77.5
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 3.9e-159 565.1 360 75.3
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 8.8e-159 563.9 354 76.0
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.1e-158 563.5 355 77.2
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 1.1e-158 563.5 352 76.1
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 5.7e-158 561.2 354 75.4
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 7.4e-158 560.8 352 76.7
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 7.4e-158 560.8 359 75.5
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 9.7e-158 560.5 361 74.5
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.7e-157 559.7 360 75.3
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 2.2e-157 559.3 363 76.3
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 2.2e-157 559.3 354 75.1
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 2.2e-157 559.3 360 74.7
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 2.8e-157 558.9 361 73.4
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 6.3e-157 557.8 365 75.3
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 8.2e-157 557.4 365 73.2
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 8.2e-157 557.4 354 76.3
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 8.2e-157 557.4 352 75.0
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 8.2e-157 557.4 361 73.4
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.1e-156 557.0 356 74.4
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.8e-156 556.2 359 75.2
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.8e-156 556.2 354 75.1
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 4.1e-156 555.1 354 76.6
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 6.9e-156 554.3 352 74.7
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.9e-156 554.3 352 74.7
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 9.1e-156 553.9 361 74.8
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-155 553.5 352 74.7
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 2.0e-155 552.7 359 74.9
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.4e-155 552.0 352 74.7
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 4.5e-155 551.6 349 74.5
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 5.9e-155 551.2 360 73.1
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.3e-154 550.1 358 72.3
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 1.7e-154 549.7 364 73.6
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.7e-154 549.7 358 72.1
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.7e-154 549.7 358 72.1
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 2.9e-154 548.9 359 73.0
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 2.9e-154 548.9 352 74.7
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 3.8e-154 548.5 352 75.0
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 5.0e-154 548.1 354 74.3
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 8.5e-154 547.4 360 73.1
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 8.5e-154 547.4 359 74.9
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.9e-153 546.2 369 71.3
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.5e-153 545.8 356 72.5
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.1e-152 542.7 360 72.2
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.1e-152 542.7 409 67.7
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 4.7e-152 541.6 359 73.5
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 6.1e-152 541.2 359 73.0
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 6.1e-152 541.2 359 73.0
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.0e-151 540.4 352 73.6
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.3e-151 539.3 352 73.0
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 2.3e-151 539.3 354 71.8
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 3.0e-151 538.9 352 73.0
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 5.1e-151 538.1 359 72.1
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 2.6e-150 535.8 352 72.2
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 4.4e-150 535.0 359 71.9
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 5.7e-150 534.6 369 70.5
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 7.4e-150 534.3 352 72.7
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 9.7e-150 533.9 352 72.2
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 2.8e-149 532.3 352 72.7
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 3.7e-149 531.9 352 72.7
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 3.7e-149 531.9 363 71.3
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.4e-148 530.0 383 67.4
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 3.1e-148 528.9 352 71.3
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 4.1e-148 528.5 352 71.6
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 5.3e-148 528.1 352 71.3
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 1.6e-147 526.6 352 70.2
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 2.6e-147 525.8 359 71.0
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 4.5e-147 525.0 333 74.8
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.8e-146 521.9 359 70.8
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 2.1e-144 516.2 447 58.2
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.7e-144 515.8 444 59.5
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 2.3e-143 512.7 431 61.7
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 4.0e-143 511.9 368 66.0
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 5.7e-142 508.1 356 68.8
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 9.1e-140 500.7 361 67.0
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.7e-138 496.5 362 66.0
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.8e-138 495.4 353 67.1
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.1e-137 493.8 356 66.3
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 2.7e-136 489.2 353 65.7
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 8.0e-136 487.6 359 65.5
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 7.5e-134 481.1 354 64.4
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 2.2e-133 479.6 384 65.1
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 2.2e-133 479.6 359 63.0
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 8.3e-133 477.6 353 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 5.4e-132 474.9 357 62.5
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.0e-127 460.7 265 81.5
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 4.0e-127 458.8 351 61.5
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 4.5e-123 445.3 516 48.3
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 6.8e-119 431.4 272 76.1
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 8.3e-117 424.5 246 80.1
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 2.3e-114 416.4 275 71.6
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.0e-114 416.0 379 55.7
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.2e-112 410.6 346 62.1
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 9.2e-100 367.9 348 52.6
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 3.5e-99 365.9 347 54.2
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 9.9e-94 347.8 332 51.5
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.9e-93 346.3 304 57.2
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 9.6e-81 304.7 200 73.5
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.5e-78 297.4 225 64.0
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 3.3e-73 279.6 264 54.9
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.6e-70 270.0 154 79.9
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.8e-70 268.9 171 73.1
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 5.8e-70 268.9 164 76.2
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 3.2e-68 263.1 171 69.6
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 4.5e-62 242.7 183 65.0
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 8.4e-61 238.4 350 41.1
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 5.5e-52 209.1 177 57.1
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.3e-50 204.5 112 83.9
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.1e-41 174.9 162 56.8
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 1.5e-41 174.5 106 73.6
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 3.1e-31 140.2 108 65.7
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.0e-29 135.2 84 72.6
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 1.8e-23 114.4 90 65.6
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.3e-21 108.2 159 45.3
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 6.1e-19 99.4 77 62.3
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.3e-18 97.4 54 81.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 5.2e-18 96.3 55 76.4
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 6.8e-18 95.9 62 67.7
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 5.7e-17 92.8 232 28.9
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.4e-15 88.2 86 53.5
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 5.0e-13 79.7 66 56.1
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 4.7e-11 73.2 70 57.1
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 4.4e-09 66.6 79 44.3
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 3.5e-06 57.0 37 70.3


User provided reference genes

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