Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C59T9 Lonicera japonica HOM05D004745 ORTHO05D005626 5.7e-43 177.2 89 100.0
Lj9A502G38 Lonicera japonica HOM05D004745 ORTHO05D005626 1.2e-29 132.9 70 98.6
MD13G1165900 Malus domestica HOM05D004745 ORTHO05D005626 1.7e-26 122.5 73 84.9
TWI12G1169 Tripterygium wilfordii HOM05D004745 ORTHO05D005626 2.2e-26 122.1 71 84.5
Lsat_1_v5_gn_5_132160 Lactuca sativa HOM05D004745 ORTHO05D005626 3.7e-26 121.3 71 83.1
Lj9A53G21 Lonicera japonica HOM05D004745 ORTHO05D005626 3.7e-26 121.3 65 93.8
Prupe.3G081800 Prunus persica HOM05D004745 ORTHO05D005626 4.8e-26 120.9 71 85.9
Potri.001G171800 Populus trichocarpa HOM05D004745 ORTHO05D005626 6.3e-26 120.6 71 84.5
RcHm_v2.0_Chr2g0136431 Rosa chinensis HOM05D004745 ORTHO05D005626 6.3e-26 120.6 71 83.1
BcaB03g14542 Brassica carinata HOM05D004745 ORTHO05D005626 8.3e-26 120.2 71 81.7
MD17G1207300 Malus domestica HOM05D004745 ORTHO05D005626 8.3e-26 120.2 72 80.6
BolC5t30092H Brassica oleracea HOM05D004745 ORTHO05D005626 1.1e-25 119.8 71 81.7
BraA06t24321Z Brassica rapa HOM05D004745 ORTHO05D005626 1.1e-25 119.8 71 81.7
QL05p028225 Quercus lobata HOM05D004745 ORTHO05D005626 1.8e-25 119.0 71 85.9
FvH4_6g30190 Fragaria vesca HOM05D004745 ORTHO05D005626 2.4e-25 118.6 71 84.5
FAN14G5774 Fragaria x ananassa HOM05D004745 ORTHO05D005626 2.4e-25 118.6 71 84.5
Sopen07g005700 Solanum pennellii HOM05D004745 ORTHO05D005626 3.1e-25 118.2 71 83.1
AUR62016368 Chenopodium quinoa HOM05D004745 ORTHO05D005626 4.1e-25 117.9 71 80.3
SalBow2G2198 Salvia bowleyana HOM05D004745 ORTHO05D005626 5.3e-25 117.5 88 70.5
C05p13550 Brassica napus HOM05D004745 ORTHO05D005626 7.0e-25 117.1 71 78.9
Hund06573 Selenicereus undatus HOM05D004745 ORTHO05D005626 7.0e-25 117.1 71 80.3
PGSC0003DMG400029962 Solanum tuberosum HOM05D004745 ORTHO05D005626 7.0e-25 117.1 71 83.1
Actinidia15789 Actinidia chinensis HOM05D004745 ORTHO05D005626 9.1e-25 116.7 71 78.9
BcaC05g25486 Brassica carinata HOM05D004745 ORTHO05D005626 9.1e-25 116.7 71 77.5
Thecc.06G070400 Theobroma cacao HOM05D004745 ORTHO05D005626 9.1e-25 116.7 71 80.3
Solyc07g015860.3 Solanum lycopersicum HOM05D004745 ORTHO05D005626 1.2e-24 116.3 71 80.3
COL.COLO4_12918 Corchorus olitorius HOM05D004745 ORTHO05D005626 1.6e-24 115.9 71 77.5
FAN02G3524 Fragaria x ananassa HOM05D004745 ORTHO05D005626 1.6e-24 115.9 71 83.1
HanXRQChr10g0303121 Helianthus annuus HOM05D004745 ORTHO05D005626 1.6e-24 115.9 71 81.7
Rhsim08G0215400 Rhododendron simsii HOM05D004745 ORTHO05D005626 1.6e-24 115.9 71 81.7
THA.LOC104808227 Tarenaya hassleriana HOM05D004745 ORTHO05D005626 1.6e-24 115.9 71 83.1
A09p61430 Brassica napus HOM05D004745 ORTHO05D005626 2.0e-24 115.5 71 81.7
BraA09t41514Z Brassica rapa HOM05D004745 ORTHO05D005626 2.0e-24 115.5 71 81.7
CiPaw.01G245300 Carya illinoinensis HOM05D004745 ORTHO05D005626 2.0e-24 115.5 71 81.7
AUR62011549 Chenopodium quinoa HOM05D004745 ORTHO05D005626 2.0e-24 115.5 69 78.3
Migut.I00794 Erythranthe guttata HOM05D004745 ORTHO05D005626 2.0e-24 115.5 71 77.5
Atru.chr1.3054 Acer truncatum HOM05D004745 ORTHO05D005626 2.7e-24 115.2 71 80.3
BcaC05g25480 Brassica carinata HOM05D004745 ORTHO05D005626 2.7e-24 115.2 71 81.7
Carub.0001s1517 Capsella rubella HOM05D004745 ORTHO05D005626 2.7e-24 115.2 71 80.3
AL1G27500 Arabidopsis lyrata HOM05D004745 ORTHO05D005626 3.5e-24 114.8 71 80.3
MSTRG.22729 Avicennia marina HOM05D004745 ORTHO05D005626 3.5e-24 114.8 71 78.9
Hma1.2p1_0394F.1_g143470 Hydrangea macrophylla HOM05D004745 ORTHO05D005626 3.5e-24 114.8 69 79.7
Nitab4.5_0000413g0130 Nicotiana tabacum HOM05D004745 ORTHO05D005626 3.5e-24 114.8 71 83.1
C08p44990 Brassica napus HOM05D004745 ORTHO05D005626 4.5e-24 114.4 71 80.3
Duzib235G0601 Durio zibethinus HOM05D004745 ORTHO05D005626 4.5e-24 114.4 71 80.3
SGA_v2.0_scaffold5G02669 Striga asiatica HOM05D004745 ORTHO05D005626 4.5e-24 114.4 90 68.9
Cfa001995 Carpinus fangiana HOM05D004745 ORTHO05D005626 5.9e-24 114.0 71 81.7
Sabra01G0139800 Salix brachista HOM05D004745 ORTHO05D005626 5.9e-24 114.0 69 78.3
Ciclev10026288m.g Citrus clementina HOM05D004745 ORTHO05D005626 7.7e-24 113.6 71 78.9
Haze_16523 Corylus avellana HOM05D004745 ORTHO05D005626 7.7e-24 113.6 71 81.7
DCAR_025491 Daucus carota HOM05D004745 ORTHO05D005626 7.7e-24 113.6 65 84.6
Nitab4.5_0009683g0020 Nicotiana tabacum HOM05D004745 ORTHO05D005626 7.7e-24 113.6 71 81.7
A06p11430 Brassica napus HOM05D004745 ORTHO05D005626 1.0e-23 113.2 71 80.3
CAN.G1158.5 Capsicum annuum HOM05D004745 ORTHO05D005626 1.0e-23 113.2 71 80.3
CARHR015930 Cardamine hirsuta HOM05D004745 ORTHO05D005626 1.0e-23 113.2 71 77.5
Peaxi162Scf00320g00620 Petunia axillaris HOM05D004745 ORTHO05D005626 1.0e-23 113.2 71 81.7
Cc04_g04150 Coffea canephora HOM05D004745 ORTHO05D005626 1.3e-23 112.8 71 80.3
Thhalv10008467m.g Eutrema salsugineum HOM05D004745 ORTHO05D005626 1.3e-23 112.8 71 81.7
Sp1g13740 Schrenkiella parvula HOM05D004745 ORTHO05D005626 1.3e-23 112.8 71 81.7
vmacro18973 Vaccinium macrocarpon HOM05D004745 ORTHO05D005626 1.3e-23 112.8 71 81.7
EL10Ac9g21930 Beta vulgaris HOM05D004745 ORTHO05D005626 1.7e-23 112.5 71 78.9
CsaV3_4G001440 Cucumis sativus L. HOM05D004745 ORTHO05D005626 2.2e-23 112.1 71 76.1
FAN09G2173 Fragaria x ananassa HOM05D004745 ORTHO05D005626 2.2e-23 112.1 71 80.3
ClCG07G012760 Citrullus lanatus HOM05D004745 ORTHO05D005626 2.9e-23 111.7 71 78.9
ECA238G2546 Erigeron canadensis HOM05D004745 ORTHO05D005626 2.9e-23 111.7 72 79.2
Eucgr.F02539 Eucalyptus grandis HOM05D004745 ORTHO05D005626 2.9e-23 111.7 94 63.8
Oeu000434.1 Olea europaea HOM05D004745 ORTHO05D005626 2.9e-23 111.7 71 78.9
Peaxi162Scf00320g00617 Petunia axillaris HOM05D004745 ORTHO05D005626 2.9e-23 111.7 71 80.3
arahy.Tifrunner.gnm1.ann1.EYL5YU Arachis hypogaea HOM05D004745 ORTHO05D005626 3.8e-23 111.3 71 71.8
arahy.Tifrunner.gnm1.ann1.Q3QYYY Arachis hypogaea HOM05D004745 ORTHO05D005626 3.8e-23 111.3 71 71.8
Nn8g39406 Nelumbo nucifera HOM05D004745 ORTHO05D005626 3.8e-23 111.3 71 77.5
Sc06g0004020 Simmondsia chinensis HOM05D004745 ORTHO05D005626 3.8e-23 111.3 65 80.0
AT1G15390 Arabidopsis thaliana HOM05D004745 ORTHO05D005626 5.0e-23 110.9 71 77.5
Dinv30579 Davidia involucrata HOM05D004745 ORTHO05D005626 5.0e-23 110.9 71 81.7
Manes.11G053800 Manihot esculenta HOM05D004745 ORTHO05D005626 6.5e-23 110.5 71 78.9
PSO170G2068 Papaver somniferum HOM05D004745 ORTHO05D005626 6.5e-23 110.5 69 76.8
PSO455G0289 Papaver somniferum HOM05D004745 ORTHO05D005626 6.5e-23 110.5 69 76.8
PGR102G0579 Punica granatum HOM05D004745 ORTHO05D005626 6.5e-23 110.5 71 76.1
Gohir.A10G075700 Gossypium hirsutum HOM05D004745 ORTHO05D005626 8.5e-23 110.2 71 77.5
Gohir.D10G075900 Gossypium hirsutum HOM05D004745 ORTHO05D005626 8.5e-23 110.2 71 77.5
Aa31LG7G150 Aethionema arabicum HOM05D004745 ORTHO05D005626 1.1e-22 109.8 71 76.1
Gorai.011G081700 Gossypium raimondii HOM05D004745 ORTHO05D005626 1.1e-22 109.8 71 77.5
CANSAT56G2452 Cannabis sativa HOM05D004745 ORTHO05D005626 1.5e-22 109.4 71 76.1
MD17G1207400 Malus domestica HOM05D004745 ORTHO05D005626 1.5e-22 109.4 60 86.7
TAR636G0831 Trochodendron aralioides HOM05D004745 ORTHO05D005626 1.5e-22 109.4 71 76.1
BcaC07g41503 Brassica carinata HOM05D004745 ORTHO05D005626 1.9e-22 109.0 71 77.5
BolC8t52045H Brassica oleracea HOM05D004745 ORTHO05D005626 1.9e-22 109.0 71 77.5
CSS0020299 Camellia sinensis var. sinensis HOM05D004745 ORTHO05D005626 2.5e-22 108.6 71 76.1
Glyma.08G210900 Glycine max HOM05D004745 ORTHO05D005626 3.2e-22 108.2 71 74.6
ATR1156G012 Amborella trichopoda HOM05D004745 ORTHO05D005626 4.2e-22 107.8 64 78.1
CSS0024051 Camellia sinensis var. sinensis HOM05D004745 ORTHO05D005626 5.5e-22 107.5 71 76.1
Lsat_1_v5_gn_4_105820 Lactuca sativa HOM05D004745 ORTHO05D005626 7.2e-22 107.1 81 70.4
GSVIVG01017280001 Vitis vinifera HOM05D004745 ORTHO05D005626 7.2e-22 107.1 71 73.2
ECA234G2450 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.2e-21 106.3 70 78.6
ECA238G0294 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.2e-21 106.3 70 78.6
ECA238G4104 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.2e-21 106.3 70 78.6
MBI04_g07638_MAGBIO Magnolia biondii HOM05D004745 ORTHO05D005626 1.2e-21 106.3 92 63.0
MD13G1166000 Malus domestica HOM05D004745 ORTHO05D005626 1.2e-21 106.3 59 84.7
Sed0026286 Sechium edule HOM05D004745 ORTHO05D005626 1.6e-21 105.9 71 73.2
Ca_29515_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 2.1e-21 105.5 71 70.4
ECA233G1751 Erigeron canadensis HOM05D004745 ORTHO05D005626 2.7e-21 105.1 70 78.6
Lj3g0003662 Lotus japonicus HOM05D004745 ORTHO05D005626 2.7e-21 105.1 63 74.6
MELO3C017896.2 Cucumis melo HOM05D004745 ORTHO05D005626 4.7e-21 104.4 60 83.3
ECA246G2906 Erigeron canadensis HOM05D004745 ORTHO05D005626 4.7e-21 104.4 66 78.8
ECA234G1027 Erigeron canadensis HOM05D004745 ORTHO05D005626 8.0e-21 103.6 70 75.7
ECA232G3489 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.0e-20 103.2 70 75.7
Lalb_Chr01g0012481 Lupinus albus HOM05D004745 ORTHO05D005626 1.0e-20 103.2 72 68.1
Phvul.010G154200 Phaseolus vulgaris HOM05D004745 ORTHO05D005626 1.4e-20 102.8 71 69.0
Medtr4g011040 Medicago truncatula HOM05D004745 ORTHO05D005626 1.8e-20 102.4 67 68.7
TPR.G38663 Trifolium pratense HOM05D004745 ORTHO05D005626 2.3e-20 102.1 64 70.3
Psat7g255920 Pisum sativum HOM05D004745 ORTHO05D005626 4.0e-20 101.3 67 68.7
VMungo0331G1340 Vigna mungo HOM05D004745 ORTHO05D005626 4.0e-20 101.3 71 69.0
Lalb_Chr14g0373711 Lupinus albus HOM05D004745 ORTHO05D005626 8.8e-20 100.1 58 79.3
ECA240G0712 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.2e-19 99.8 60 80.0
unitig_747.g21294 Utricularia gibba HOM05D004745 ORTHO05D005626 2.0e-19 99.0 65 73.8
CDE04G3151 Ceratophyllum demersum HOM05D004745 ORTHO05D005626 3.4e-19 98.2 69 69.6
HanXRQChr16g0500481 Helianthus annuus HOM05D004745 ORTHO05D005626 4.4e-19 97.8 64 73.4
HPP92_024132 Vanilla planifolia HOM05D004745 ORTHO05D005626 7.5e-19 97.1 62 74.2
Lj3g0018837 Lotus japonicus HOM05D004745 ORTHO05D005626 9.8e-19 96.7 60 68.3
TPR.G37193 Trifolium pratense HOM05D004745 ORTHO05D005626 1.3e-18 96.3 72 65.3
Ca_01071_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 1.7e-18 95.9 72 66.7
Ca_20430_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 1.7e-18 95.9 60 73.3
Psat5g301200 Pisum sativum HOM05D004745 ORTHO05D005626 1.7e-18 95.9 64 71.9
Aqoxy7G02119 Aquilegia oxysepala HOM05D004745 ORTHO05D005626 2.8e-18 95.1 75 64.0
VMungo1080G0321 Vigna mungo HOM05D004745 ORTHO05D005626 3.7e-18 94.7 59 72.9
Pp3c1_9250 Physcomitrium patens HOM05D004745 ORTHO05D005626 8.3e-18 93.6 62 69.4
arahy.Tifrunner.gnm1.ann1.1TA14L Arachis hypogaea HOM05D004745 ORTHO05D005626 1.1e-17 93.2 68 63.2
arahy.Tifrunner.gnm1.ann1.8B3Q96 Arachis hypogaea HOM05D004745 ORTHO05D005626 1.1e-17 93.2 68 63.2
Medtr2g103430 Medicago truncatula HOM05D004745 ORTHO05D005626 2.4e-17 92.0 73 61.6
Pp3c2_27110 Physcomitrium patens HOM05D004745 ORTHO05D005626 5.4e-17 90.9 78 57.7
CBR_g8594 Chara braunii HOM05D004745 ORTHO05D005626 7.0e-17 90.5 62 69.4
Os01g0555800 Oryza sativa ssp. japonica HOM05D004745 ORTHO05D005626 1.6e-16 89.4 58 70.7
Phvul.005G175900 Phaseolus vulgaris HOM05D004745 ORTHO05D005626 2.7e-16 88.6 59 69.5
Medtr2g103420 Medicago truncatula HOM05D004745 ORTHO05D005626 7.7e-16 87.0 89 50.6
Zm00001eb329240 Zea mays HOM05D004745 ORTHO05D005626 2.9e-15 85.1 58 65.5
Aqoxy7G02118 Aquilegia oxysepala HOM05D004745 ORTHO05D005626 1.1e-14 83.2 68 66.2
Glyma.15G009700 Glycine max HOM05D004745 ORTHO05D005626 1.1e-14 83.2 59 69.5
Mapoly0061s0037 Marchantia polymorpha HOM05D004745 ORTHO05D005626 1.1e-14 83.2 63 61.9
Mapoly0285s0003 Marchantia polymorpha HOM05D004745 ORTHO05D005626 1.1e-14 83.2 63 61.9
BcaC01g05769 Brassica carinata HOM05D004745 ORTHO05D005626 2.1e-13 79.0 65 69.2
arahy.Tifrunner.gnm1.ann1.9IE0L2 Arachis hypogaea HOM05D004745 ORTHO05D005626 2.3e-12 75.5 54 64.8
arahy.Tifrunner.gnm1.ann1.W67IMC Arachis hypogaea HOM05D004745 ORTHO05D005626 2.3e-12 75.5 54 64.8
TWI18G0786 Tripterygium wilfordii HOM05D004745 ORTHO05D005626 5.2e-12 74.3 53 71.7
SMO229G0001 Selaginella moellendorffii HOM05D004745 ORTHO05D005626 2.6e-11 72.0 64 51.6
BolC9t52937H Brassica oleracea HOM05D005263 ORTHO05D006891 1.7e-10 69.3 50 72.0
Cre03.g172100 Chlamydomonas reinhardtii HOM05D004745 ORTHO05D005626 7.0e-09 63.9 59 54.2
MCO13G487 Micromonas commoda HOM05D004745 ORTHO05D005626 8.6e-07 57.0 57 45.6


User provided reference genes

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