Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 1.2e-46 189.5 94 100.0
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 8.7e-26 120.2 80 70.0
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 5.6e-25 117.5 80 68.8
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 5.6e-25 117.5 80 70.0
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 7.4e-25 117.1 80 67.5
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.3e-24 116.3 80 68.8
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.3e-24 116.3 78 70.5
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.3e-24 116.3 78 70.5
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.3e-24 116.3 78 70.5
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.1e-24 115.5 78 69.2
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 2.8e-24 115.2 80 66.2
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 2.8e-24 115.2 71 81.7
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 3.7e-24 114.8 77 70.1
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 3.7e-24 114.8 80 67.5
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 3.7e-24 114.8 78 67.9
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 6.2e-24 114.0 80 65.0
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 6.2e-24 114.0 80 67.5
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 6.2e-24 114.0 80 66.2
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 6.2e-24 114.0 85 69.4
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 6.2e-24 114.0 80 66.2
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 8.2e-24 113.6 69 79.7
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 8.2e-24 113.6 80 66.2
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 8.2e-24 113.6 77 70.1
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.1e-23 113.2 86 67.4
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.1e-23 113.2 80 67.5
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.1e-23 113.2 80 65.0
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.1e-23 113.2 80 68.8
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 1.1e-23 113.2 72 80.6
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.4e-23 112.8 59 86.4
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 1.4e-23 112.8 69 81.2
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.4e-23 112.8 80 66.2
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.4e-23 112.8 70 80.0
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 1.4e-23 112.8 80 65.0
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.4e-23 112.8 80 66.2
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.4e-23 112.8 80 66.2
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 1.8e-23 112.5 68 80.9
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.8e-23 112.5 64 78.1
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.8e-23 112.5 64 78.1
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.4e-23 112.1 63 81.0
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 2.4e-23 112.1 63 81.0
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.4e-23 112.1 68 76.5
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.4e-23 112.1 68 76.5
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.4e-23 112.1 80 65.0
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 2.4e-23 112.1 78 66.7
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 2.4e-23 112.1 80 66.2
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 3.1e-23 111.7 71 80.3
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 3.1e-23 111.7 71 80.3
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 3.1e-23 111.7 71 80.3
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.1e-23 111.7 80 66.2
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.1e-23 111.7 80 65.0
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 3.1e-23 111.7 72 79.2
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 4.0e-23 111.3 78 66.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 4.0e-23 111.3 64 79.7
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 5.3e-23 110.9 59 86.4
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 5.3e-23 110.9 59 86.4
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 6.9e-23 110.5 78 65.4
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 6.9e-23 110.5 80 65.0
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.9e-23 110.5 80 65.0
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.9e-23 110.5 74 71.6
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 6.9e-23 110.5 68 75.0
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 9.0e-23 110.2 80 65.0
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 9.0e-23 110.2 68 82.4
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.2e-22 109.8 70 74.3
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.2e-22 109.8 80 65.0
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 1.2e-22 109.8 71 77.5
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.2e-22 109.8 71 78.9
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.5e-22 109.4 65 78.5
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 1.5e-22 109.4 80 65.0
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.5e-22 109.4 80 63.8
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.5e-22 109.4 80 63.8
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.5e-22 109.4 59 88.1
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.5e-22 109.4 59 88.1
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.5e-22 109.4 59 88.1
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.5e-22 109.4 59 88.1
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.5e-22 109.4 59 88.1
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.5e-22 109.4 59 88.1
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.5e-22 109.4 59 88.1
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 2.0e-22 109.0 80 65.0
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 2.0e-22 109.0 80 65.0
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 2.0e-22 109.0 80 65.0
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 2.0e-22 109.0 63 84.1
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 2.0e-22 109.0 63 84.1
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 2.0e-22 109.0 66 74.2
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.6e-22 108.6 80 63.8
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 3.4e-22 108.2 71 76.1
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 4.5e-22 107.8 61 82.0
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 4.5e-22 107.8 59 84.7
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 5.8e-22 107.5 65 80.0
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 5.8e-22 107.5 61 82.0
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 5.8e-22 107.5 61 82.0
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 7.6e-22 107.1 70 74.3
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 7.6e-22 107.1 76 64.5
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 7.6e-22 107.1 59 86.4
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.0e-21 106.7 80 66.2
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.0e-21 106.7 72 72.2
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.0e-21 106.7 79 64.6
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.3e-21 106.3 59 86.4
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 2.2e-21 105.5 64 79.7
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.2e-21 105.5 80 62.5
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 2.2e-21 105.5 67 74.6
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.2e-21 105.5 82 63.4
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.9e-21 105.1 80 66.2
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 2.9e-21 105.1 70 72.9
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 2.9e-21 105.1 80 61.2
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 3.8e-21 104.8 80 62.5
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 3.8e-21 104.8 59 81.4
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 4.9e-21 104.4 68 69.1
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 4.9e-21 104.4 70 71.4
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 4.9e-21 104.4 70 71.4
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 4.9e-21 104.4 70 71.4
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 4.9e-21 104.4 70 71.4
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 4.9e-21 104.4 82 63.4
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 8.4e-21 103.6 54 87.0
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 1.1e-20 103.2 70 72.9
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.1e-20 103.2 60 83.3
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 1.4e-20 102.8 57 80.7
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.4e-20 102.8 70 70.0
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 1.4e-20 102.8 70 70.0
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 1.4e-20 102.8 70 70.0
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.4e-20 102.8 70 70.0
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.4e-20 102.8 56 87.5
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.5e-20 102.1 77 62.3
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 2.5e-20 102.1 68 69.1
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 2.5e-20 102.1 68 69.1
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 2.5e-20 102.1 68 69.1
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 3.2e-20 101.7 78 62.8
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 4.2e-20 101.3 59 76.3
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 5.5e-20 100.9 68 70.6
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 1.3e-18 96.3 80 55.0
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 2.3e-18 95.5 57 75.4
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 9.7e-17 90.1 65 61.5
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.6e-16 89.4 79 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.2e-14 83.2 77 50.6
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.2e-14 83.2 86 53.5
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 1.5e-14 82.8 60 60.0
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.3e-13 79.7 65 58.5
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.5e-13 77.4 62 59.7
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 8.5e-13 77.0 46 80.4
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.1e-12 76.6 45 77.8
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 1.1e-12 76.6 70 55.7
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 1.9e-12 75.9 62 59.7
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 3.2e-12 75.1 50 74.0
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 3.2e-12 75.1 50 74.0
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 3.2e-12 75.1 40 87.5
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 5.5e-12 74.3 63 65.1
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.6e-11 72.8 54 59.3
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.0e-10 70.1 53 60.4
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.8e-10 69.3 55 63.6
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 2.0e-09 65.9 47 68.1
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 1.7e-08 62.8 35 85.7
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 6.3e-08 60.8 48 64.6


User provided reference genes

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