Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 3.9e-235 817.8 414 100.0
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 1.7e-219 765.8 425 91.3
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.5e-218 762.7 425 91.1
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 8.1e-217 756.9 425 89.6
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 2.0e-215 752.3 425 88.9
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 9.9e-215 750.0 425 88.5
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 2.4e-213 745.3 425 88.5
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 3.2e-213 745.0 425 88.5
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 5.4e-213 744.2 425 88.9
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 7.1e-213 743.8 425 88.7
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 3.5e-212 741.5 422 87.7
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 6.0e-212 740.7 425 87.8
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.0e-211 740.0 425 87.8
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 1.0e-211 740.0 425 87.3
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 1.7e-211 739.2 425 88.2
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.7e-211 739.2 425 87.8
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 3.0e-211 738.4 425 86.8
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 3.9e-211 738.0 425 86.4
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 5.1e-211 737.6 425 87.8
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 6.6e-211 737.3 425 87.8
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 1.9e-210 735.7 425 87.3
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 3.3e-210 734.9 425 85.9
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 9.6e-210 733.4 425 86.1
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 1.3e-209 733.0 424 85.6
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 2.1e-209 732.3 425 85.6
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 2.1e-209 732.3 425 86.8
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 3.6e-209 731.5 424 86.3
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 6.2e-209 730.7 425 85.2
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.1e-208 729.9 425 86.4
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 2.4e-208 728.8 425 85.6
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 3.1e-208 728.4 425 85.2
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 3.1e-208 728.4 425 85.6
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 9.0e-208 726.9 422 86.0
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 2.0e-207 725.7 425 84.9
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 2.6e-207 725.3 425 85.9
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 2.6e-207 725.3 425 84.2
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 3.4e-207 724.9 422 85.8
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 3.4e-207 724.9 425 85.4
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 4.4e-207 724.5 425 86.4
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 1.7e-206 722.6 425 84.2
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 2.2e-206 722.2 425 84.5
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.4e-206 720.3 424 84.4
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 1.1e-205 719.9 425 83.5
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 1.4e-205 719.5 417 86.3
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-205 719.2 424 84.4
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.2e-205 718.4 424 84.4
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 3.2e-205 718.4 449 82.4
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 4.2e-205 718.0 426 85.9
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 7.1e-205 717.2 427 84.5
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 1.2e-204 716.5 425 83.8
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 6.0e-204 714.1 425 83.3
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 6.0e-204 714.1 425 84.0
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 1.0e-203 713.4 438 82.4
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 1.3e-203 713.0 425 85.6
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 1.7e-203 712.6 425 85.2
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 1.7e-203 712.6 425 85.2
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 3.9e-203 711.4 425 83.1
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 5.1e-203 711.1 425 85.2
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 5.1e-203 711.1 425 84.9
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 6.6e-203 710.7 425 84.7
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 6.6e-203 710.7 423 84.4
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 1.1e-202 709.9 425 84.7
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 1.1e-202 709.9 425 84.7
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 2.5e-202 708.8 425 84.5
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 2.5e-202 708.8 421 83.8
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 2.5e-202 708.8 425 84.0
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 3.3e-202 708.4 426 83.8
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 3.3e-202 708.4 425 85.2
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 5.6e-202 707.6 425 85.2
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 9.6e-202 706.8 425 85.2
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-201 706.4 438 81.5
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 2.1e-201 705.7 425 84.9
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 2.1e-201 705.7 471 78.6
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 2.8e-201 705.3 425 84.5
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 2.8e-201 705.3 426 83.3
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 4.8e-201 704.5 415 85.1
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 6.2e-201 704.1 425 84.5
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 1.1e-200 703.4 420 85.0
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 1.4e-200 703.0 420 85.0
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-200 703.0 414 85.0
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 6.9e-200 700.7 425 82.8
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.5e-199 699.5 425 81.9
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 2.6e-199 698.7 425 81.4
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.6e-199 698.7 425 83.3
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 3.4e-199 698.4 421 83.1
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 3.8e-198 694.9 415 85.1
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 2.7e-196 688.7 413 85.5
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 3.5e-196 688.3 422 81.3
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 4.6e-196 688.0 425 80.2
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 1.3e-195 686.4 422 81.0
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 1.4e-192 676.4 420 79.5
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.8e-192 676.0 425 78.4
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 1.8e-192 676.0 425 78.6
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 2.4e-192 675.6 424 78.8
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.5e-191 672.9 425 78.4
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 4.5e-191 671.4 425 81.9
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 1.0e-190 670.2 424 78.3
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 2.2e-190 669.1 422 77.5
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 2.3e-187 659.1 425 80.7
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 3.9e-187 658.3 425 80.0
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 5.1e-187 657.9 433 80.1
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.3e-185 653.3 405 81.0
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 4.8e-185 651.4 425 78.1
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.3e-185 651.0 419 77.1
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 5.3e-184 647.9 425 78.1
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 6.9e-184 647.5 611 59.9
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 4.5e-183 644.8 425 78.1
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 2.2e-182 642.5 423 74.7
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 6.5e-182 641.0 423 75.4
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 1.9e-181 639.4 442 76.2
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 2.5e-181 639.0 423 75.2
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 1.8e-179 632.9 413 79.4
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.9e-178 629.4 415 79.8
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 3.7e-177 625.2 423 72.8
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 6.3e-177 624.4 417 78.2
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.4e-176 623.2 475 72.2
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 6.9e-176 620.9 422 76.5
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.6e-175 619.0 405 75.6
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 6.5e-174 614.4 401 78.6
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 1.5e-170 603.2 422 71.1
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 4.8e-169 598.2 425 70.1
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.2e-167 593.6 353 83.9
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.5e-167 593.2 412 72.1
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.6e-167 592.4 406 72.7
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 3.4e-167 592.0 410 73.7
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 1.3e-166 590.1 364 81.0
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 3.8e-166 588.6 357 84.3
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 1.6e-164 583.2 430 70.0
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 5.1e-163 578.2 410 71.0
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.7e-162 574.7 413 71.2
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 1.8e-160 569.7 344 82.0
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 7.7e-159 564.3 339 82.9
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 2.2e-158 562.8 340 82.9
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.6e-156 556.6 431 68.7
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 1.0e-155 553.9 415 72.0
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.1e-152 542.0 413 65.9
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 1.2e-151 540.4 411 63.5
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 1.4e-147 526.9 312 84.6
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-144 517.3 399 66.4
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 1.2e-138 497.3 303 83.2
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 2.6e-138 496.1 423 60.5
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.5e-133 480.3 272 86.8
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.6e-132 476.9 413 61.7
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.4e-130 468.8 275 82.5
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 1.1e-128 464.2 442 57.2
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 1.1e-120 437.6 237 91.1
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.7e-118 430.3 435 54.7
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 9.5e-109 397.9 431 50.6
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 3.2e-96 356.3 436 46.1
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 4.2e-96 355.9 252 70.6
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 7.1e-88 328.6 171 91.8
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.6e-84 317.4 465 43.7
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 5.6e-77 292.4 410 41.0
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 6.9e-75 285.4 199 75.4
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 3.4e-66 256.5 239 59.4
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 3.3e-61 240.0 155 76.1
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 2.4e-59 233.8 254 57.1
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 3.1e-59 233.4 168 70.2
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 7.7e-58 228.8 166 72.9
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 5.5e-48 196.1 158 67.1
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 2.1e-47 194.1 161 64.6
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 6.5e-33 146.0 86 81.4
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 2.4e-27 127.5 96 70.8
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 1.2e-26 125.2 209 38.3
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 5.9e-26 122.9 120 59.2
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.0e-25 122.1 72 83.3
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 1.6e-23 114.8 87 69.0
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 1.7e-20 104.8 61 82.0
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 1.7e-20 104.8 157 43.9
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 6.3e-20 102.8 129 47.3
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 8.3e-20 102.4 55 85.5
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 5.4e-19 99.8 95 60.0
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 1.6e-15 88.2 230 30.4
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 6.1e-15 86.3 55 67.3
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 8.0e-15 85.9 48 89.6
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 9.2e-11 72.4 94 45.7
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.2e-10 72.0 70 54.3
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 3.5e-10 70.5 47 74.5
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 1.3e-09 68.6 38 89.5
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 3.0e-09 67.4 32 93.8
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 3.9e-09 67.0 42 71.4
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 5.0e-09 66.6 44 72.7
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 6.2e-07 59.7 30 83.3


User provided reference genes

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