Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 2203.3 1101 100.0
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1911.7 1121 85.3
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1863.2 1125 83.4
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1857.8 1123 83.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1856.6 1123 82.6
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1852.0 1123 82.5
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1850.9 1119 82.9
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1849.7 1128 81.8
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1847.0 1128 81.7
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1844.3 1124 81.9
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1843.6 1124 82.6
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1839.3 1126 82.4
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1838.2 1133 81.9
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1835.5 1124 82.7
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1834.7 1124 81.9
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1830.5 1124 81.7
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1828.5 1130 81.1
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1827.4 1124 81.9
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1823.1 1123 80.9
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1821.6 1124 81.5
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1816.2 1129 80.7
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1816.2 1116 81.3
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1813.5 1124 80.2
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1811.6 1124 81.1
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1809.7 1124 81.1
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1805.8 1124 81.3
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1803.9 1124 79.9
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1803.9 1127 80.8
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1802.7 1096 82.6
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1802.3 1149 79.0
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1800.4 1129 79.7
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1796.2 1110 81.0
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1795.4 1138 80.1
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1794.2 1122 80.1
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1792.3 1125 80.3
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1791.2 1121 80.2
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1791.2 1121 79.5
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1791.2 1077 83.2
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1788.9 1124 80.2
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1787.3 1123 80.0
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1786.5 1135 80.0
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1786.2 1123 79.3
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1785.0 1125 79.4
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1783.5 1121 79.5
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1782.7 1124 80.2
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1781.9 1121 79.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1780.4 1126 79.0
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1780.0 1126 80.1
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1779.6 1117 79.4
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1778.8 1124 80.2
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1777.3 1125 79.6
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1776.1 1127 79.8
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1775.0 1128 78.6
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1773.4 1123 78.5
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1770.0 1124 78.6
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1770.0 1199 75.9
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1769.2 1165 77.8
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1763.0 1184 76.2
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1758.4 1120 78.2
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1754.2 1123 79.1
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1749.2 1080 81.2
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1738.8 1121 77.7
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1735.3 1123 77.4
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1715.7 1121 76.8
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1713.0 1118 76.4
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1712.6 1124 77.7
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1710.3 1318 69.6
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1704.1 1189 73.5
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1701.4 1118 76.2
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1691.8 1076 79.0
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1691.0 1150 76.3
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1682.2 1032 82.0
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1671.0 1119 76.8
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1670.6 1124 74.6
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1669.4 1122 74.4
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1661.0 1122 74.2
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1658.7 1122 74.1
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1658.3 1253 70.2
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1643.6 1123 73.6
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1630.2 1122 73.4
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1629.0 1122 73.4
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1628.6 1176 73.0
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1624.0 1121 73.9
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1613.2 1122 72.8
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1612.8 1122 72.8
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1612.8 1146 71.3
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1566.6 1152 69.7
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1536.2 1120 69.3
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1527.7 1104 71.0
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1524.6 1121 68.9
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1520.8 1121 69.0
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1519.2 952 80.6
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1504.6 1162 68.3
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1458.7 1109 68.5
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1443.3 842 85.5
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1441.8 867 81.5
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1438.7 838 85.8
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1379.0 973 74.3
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1350.9 861 76.5
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1242.3 1126 59.9
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1206.4 820 72.6
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1193.7 782 77.9
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1156.7 686 84.0
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1105.5 1144 51.3
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 5.5e-305 1051.2 1529 43.3
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 7.5e-302 1040.8 1103 51.2
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.2e-286 990.3 1152 47.6
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.7e-272 941.8 1148 44.7
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 7.5e-262 907.9 668 68.6
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 7.1e-260 901.4 651 72.5
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.6e-258 894.8 585 78.1
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 3.4e-254 882.5 1375 38.3
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.1e-251 873.2 529 84.1
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.4e-239 833.9 731 60.3
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.2e-206 724.5 434 83.2
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 3.6e-203 713.0 451 78.5
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 1.0e-202 711.4 536 68.7
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.8e-178 630.9 582 55.2
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 9.8e-177 625.2 420 72.1
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 5.1e-141 506.5 451 60.5
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 5.8e-137 493.0 309 78.6
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.6e-134 485.0 378 69.8
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 1.3e-125 455.3 332 73.2
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 1.4e-106 392.1 1206 28.9
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 6.3e-83 313.5 766 30.5
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.0e-80 306.2 313 53.0
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.0e-76 292.0 233 67.4
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 6.3e-75 287.0 1138 24.7
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.6e-73 282.3 189 70.4
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 5.5e-71 273.9 179 74.9
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 8.3e-67 260.0 294 53.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 3.1e-66 258.1 199 72.9
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 2.1e-62 245.4 178 67.4
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.0e-57 228.8 313 39.3
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.8e-56 224.6 212 57.5
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.3e-55 221.5 579 33.3
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 3.5e-49 201.4 212 57.5
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 5.6e-47 194.1 212 54.7
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 2.6e-44 185.3 320 42.8
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.4e-44 184.9 226 46.0
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 5.8e-44 184.1 126 69.8
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.2e-41 176.4 169 58.6
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 6.8e-37 160.6 721 23.4
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.0e-36 159.1 183 51.4
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 1.9e-31 142.5 85 80.0
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 4.3e-31 141.4 87 79.3
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 6.4e-27 127.5 85 75.3
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.3e-27 127.1 164 47.0
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.4e-26 126.3 85 67.1
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 8.1e-22 110.5 161 42.9
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 4.0e-21 108.2 65 76.9
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.2e-19 102.4 74 67.6
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.4e-18 99.0 117 54.7
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 2.1e-17 95.9 64 71.9
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 4.6e-17 94.7 67 65.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 2.3e-16 92.4 60 75.0
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 3.9e-16 91.7 70 62.9
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 1.3e-14 86.7 95 52.6
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 3.1e-13 82.0 59 69.5
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 4.0e-13 81.6 56 69.6
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 9.0e-13 80.5 59 71.2
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.2e-12 80.1 56 66.1
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 1.3e-11 76.6 45 80.0
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.4e-10 73.2 48 72.9
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 9.3e-10 70.5 49 69.4
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-09 70.1 43 76.7
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 4.6e-09 68.2 34 79.4
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 5.1e-08 64.7 71 49.3
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 8.7e-08 63.9 41 70.7


User provided reference genes

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