Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 0.0e+00 1620.9 813 100.0
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 0.0e+00 1137.9 849 66.9
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 0.0e+00 1122.8 823 67.3
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1098.6 828 65.5
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1087.0 811 67.1
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 0.0e+00 1080.5 770 68.7
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 2.4e-305 1052.0 841 62.7
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 5.3e-305 1050.8 802 65.7
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 3.9e-300 1034.6 803 64.0
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.8e-297 1025.8 841 62.2
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 5.9e-296 1020.8 816 61.6
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.2e-295 1018.8 821 62.6
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 4.2e-294 1014.6 806 63.0
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 2.1e-293 1012.3 805 63.1
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 2.1e-293 1012.3 847 60.9
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 1.1e-289 1000.0 824 61.3
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 1.1e-289 1000.0 819 61.2
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 3.1e-289 998.4 804 61.9
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.7e-287 992.6 790 62.4
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 1.2e-285 986.5 799 61.3
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 9.8e-283 976.9 826 60.2
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 4.8e-282 974.5 813 60.3
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 6.3e-282 974.2 803 60.8
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 8.3e-282 973.8 795 61.3
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 8.3e-282 973.8 813 60.1
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 2.4e-281 972.2 802 60.6
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 5.4e-281 971.1 817 60.3
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 7.0e-281 970.7 817 60.5
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 4.5e-280 968.0 825 59.2
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.1e-277 959.1 804 61.3
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.1e-277 959.1 781 61.3
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.1e-273 946.8 849 58.4
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 2.4e-273 945.7 823 58.3
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.6e-272 943.0 790 59.7
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 2.9e-271 938.7 781 61.2
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 4.3e-270 934.9 817 57.6
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.4e-268 929.9 828 57.2
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 3.4e-267 925.2 818 58.6
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 2.2e-266 922.5 755 62.3
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 8.3e-266 920.6 808 58.0
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.4e-265 919.8 802 59.6
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.9e-265 919.5 807 59.2
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.9e-265 919.5 838 57.4
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.1e-265 918.3 807 59.1
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 7.0e-265 917.5 805 59.4
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 2.0e-264 916.0 835 57.0
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 6.0e-264 914.4 810 57.3
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 2.3e-263 912.5 761 61.8
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 4.7e-261 904.8 808 57.3
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.8e-260 902.9 803 56.5
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 1.3e-258 896.7 837 56.4
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.7e-258 896.3 756 61.4
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 2.4e-257 892.5 767 58.3
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 9.2e-257 890.6 826 55.1
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 3.5e-256 888.6 783 57.7
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 5.1e-255 884.8 761 58.5
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 3.3e-254 882.1 808 56.1
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 4.3e-254 881.7 802 56.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.1e-252 877.1 801 56.2
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.8e-252 876.3 803 56.4
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 5.2e-252 874.8 798 56.1
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 5.2e-252 874.8 813 56.1
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.6e-251 872.5 822 54.5
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 9.9e-251 870.5 803 57.2
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 4.9e-250 868.2 823 56.0
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 8.3e-250 867.5 783 54.9
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 9.2e-249 864.0 797 55.5
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.8e-248 860.9 845 53.1
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.7e-247 859.8 845 53.5
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.5e-246 856.7 829 53.6
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.2e-245 853.6 832 54.6
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 2.8e-245 852.4 818 54.2
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 4.7e-245 851.7 817 54.1
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.4e-244 850.1 813 54.1
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.8e-244 849.7 809 53.4
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.0e-244 848.6 866 51.5
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 2.0e-243 846.3 783 55.3
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.4e-241 839.3 830 52.7
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 5.4e-241 838.2 797 53.8
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 7.8e-240 834.3 797 53.3
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.7e-239 833.2 801 53.7
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 2.3e-239 832.8 843 51.7
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 3.9e-239 832.0 806 53.5
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 1.1e-238 830.5 827 52.7
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.5e-238 830.1 798 54.3
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.6e-237 825.5 667 62.2
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 8.4e-234 814.3 810 53.7
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 1.4e-233 813.5 826 51.3
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.6e-232 810.1 842 50.6
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 4.6e-232 808.5 824 51.3
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.1e-230 803.9 757 55.2
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.5e-230 803.5 803 52.3
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 9.6e-230 800.8 802 52.1
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 2.1e-229 799.7 802 52.1
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 6.2e-229 798.1 803 52.2
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 6.2e-229 798.1 803 52.2
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 9.0e-228 794.3 835 50.9
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 9.9e-227 790.8 803 51.7
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 2.2e-226 789.6 802 51.6
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.2e-226 789.6 647 60.9
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 2.9e-226 789.3 838 50.5
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.9e-225 786.6 665 61.2
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 4.2e-225 785.4 689 58.3
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.4e-220 770.4 801 50.4
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.4e-217 760.4 827 48.7
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 2.1e-213 746.5 852 47.3
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 9.0e-212 741.1 732 53.1
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 6.7e-207 724.9 950 43.2
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.1e-204 717.6 850 46.2
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.4e-204 717.2 679 53.0
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.8e-204 716.8 858 45.1
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 5.3e-204 715.3 733 50.9
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.8e-199 700.3 844 43.5
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 2.3e-191 673.3 801 45.1
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 6.7e-191 671.8 683 51.8
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 5.7e-190 668.7 836 42.9
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.3e-186 657.5 802 45.3
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.8e-183 644.8 538 58.6
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.3e-170 604.4 698 46.0
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.0e-167 594.7 585 52.5
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.0e-167 592.8 809 39.7
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 1.4e-159 567.8 722 44.7
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 2.3e-159 567.0 395 69.6
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.8e-151 540.8 730 43.7
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 6.2e-144 515.8 436 58.0
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.7e-139 500.4 733 39.8
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 7.6e-134 482.3 352 67.3
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.9e-129 467.6 350 66.0
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.3e-125 454.9 532 45.3
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 2.4e-119 434.1 323 65.3
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 9.3e-116 422.2 402 56.2
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.8e-109 400.2 736 34.5
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 1.6e-104 384.8 637 36.4
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 2.3e-90 337.8 386 47.7
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.3e-88 332.0 703 31.4
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.6e-83 315.1 356 44.4
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 2.3e-82 311.2 888 26.5
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 4.5e-78 297.0 315 48.9
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.2e-75 288.9 368 42.7
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 2.9e-69 267.7 535 31.8
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.2e-68 264.2 451 35.7
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.7e-61 241.9 177 68.4
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.7e-56 225.3 207 53.6
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 8.5e-53 213.0 182 59.3
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.4e-47 195.7 256 43.8
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 3.0e-29 134.8 479 24.2
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.9e-20 105.5 112 49.1
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.2e-19 102.8 89 62.9
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.1e-18 98.2 140 40.7
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 8.9e-18 96.7 125 46.4
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.7e-13 82.4 139 38.1
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.2e-11 76.3 62 46.8
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 2.4e-10 72.0 85 44.7
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 2.0e-09 68.9 61 54.1
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.6e-09 67.0 60 50.0
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 1.1e-07 63.2 53 52.8
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 7.1e-07 60.5 66 47.0
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 3.5e-06 58.2 47 53.2


User provided reference genes

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