Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.2e-167 593.2 309 100.0
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 2.1e-97 359.8 249 76.3
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 4.8e-97 358.6 248 76.2
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 3.4e-95 352.4 231 78.4
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 4.5e-95 352.1 245 75.5
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 4.5e-95 352.1 245 75.5
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 5.8e-95 351.7 238 76.9
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 5.8e-95 351.7 230 79.6
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 1.3e-94 350.5 239 77.0
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 1.3e-94 350.5 231 78.8
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 1.3e-94 350.5 245 75.5
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 1.7e-94 350.1 253 74.3
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.7e-94 350.1 239 76.6
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 2.2e-94 349.7 231 78.4
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.9e-94 349.4 239 75.7
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 5.0e-94 348.6 231 78.8
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 8.4e-94 347.8 245 74.3
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 8.4e-94 347.8 250 74.4
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 1.1e-93 347.4 243 76.1
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 1.1e-93 347.4 239 76.2
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 1.9e-93 346.7 248 74.2
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 3.2e-93 345.9 244 74.6
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 3.2e-93 345.9 246 75.2
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 7.2e-93 344.7 237 75.5
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 7.2e-93 344.7 237 75.5
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 9.3e-93 344.4 231 75.8
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 9.3e-93 344.4 238 74.4
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 1.2e-92 344.0 256 71.9
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 1.2e-92 344.0 225 78.7
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 2.1e-92 343.2 246 74.0
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 2.7e-92 342.8 247 76.5
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 3.5e-92 342.4 231 74.9
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 3.5e-92 342.4 247 76.1
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 6.1e-92 341.7 237 75.5
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 6.1e-92 341.7 247 76.1
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 7.9e-92 341.3 231 77.1
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 7.9e-92 341.3 238 73.5
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 1.0e-91 340.9 230 77.0
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 1.0e-91 340.9 248 73.4
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 1.0e-91 340.9 230 76.5
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 1.3e-91 340.5 231 77.9
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 2.3e-91 339.7 239 73.6
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 2.3e-91 339.7 245 75.1
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 5.1e-91 338.6 231 77.5
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 8.7e-91 337.8 236 73.7
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 1.1e-90 337.4 237 73.8
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 1.1e-90 337.4 236 75.4
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 1.1e-90 337.4 230 75.7
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 1.1e-90 337.4 229 79.0
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 1.9e-90 336.7 237 74.3
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 1.9e-90 336.7 255 71.0
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 3.3e-90 335.9 239 73.2
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 3.3e-90 335.9 259 71.0
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 4.3e-90 335.5 250 70.4
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 9.7e-90 334.3 248 73.0
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 9.7e-90 334.3 231 74.9
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 2.2e-89 333.2 248 71.4
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 2.2e-89 333.2 254 71.7
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 2.8e-89 332.8 249 71.9
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 6.3e-89 331.6 251 70.5
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 1.4e-88 330.5 248 71.0
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 1.8e-88 330.1 236 72.9
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 1.8e-88 330.1 230 74.3
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 2.4e-88 329.7 249 70.7
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 3.1e-88 329.3 232 72.0
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.3e-88 328.6 231 74.0
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 5.3e-88 328.6 251 69.7
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 6.9e-88 328.2 251 70.5
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 6.9e-88 328.2 245 70.6
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 1.2e-87 327.4 257 70.8
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 2.6e-87 326.2 230 73.0
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 3.4e-87 325.9 231 73.6
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 3.4e-87 325.9 231 73.6
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 3.4e-87 325.9 231 73.6
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 4.5e-87 325.5 230 71.3
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 4.5e-87 325.5 236 72.5
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 5.9e-87 325.1 234 70.9
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 7.7e-87 324.7 238 71.8
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 1.3e-86 323.9 239 68.6
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 2.2e-86 323.2 255 70.2
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 3.8e-86 322.4 230 73.0
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 1.4e-85 320.5 256 68.0
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 5.5e-85 318.5 231 71.0
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 1.2e-84 317.4 250 66.0
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 7.9e-84 314.7 257 67.7
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 3.0e-83 312.8 259 65.3
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 5.1e-83 312.0 257 67.3
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 8.2e-81 304.7 230 67.8
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 1.4e-80 303.9 237 66.7
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 1.4e-80 303.9 237 68.8
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 1.2e-79 300.8 248 64.1
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 4.7e-76 288.9 237 65.0
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 6.1e-76 288.5 221 69.2
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 7.9e-76 288.1 234 64.5
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 1.4e-75 287.3 182 81.3
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 2.0e-74 283.5 181 79.0
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 1.6e-71 273.9 181 75.7
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 3.7e-65 252.7 164 76.2
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 1.0e-62 244.6 159 76.1
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 1.1e-61 241.1 231 60.6
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.5e-61 240.7 164 76.2
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 4.2e-61 239.2 161 76.4
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 1.2e-60 237.7 237 60.3
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 3.6e-52 209.5 232 48.3
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 1.8e-51 207.2 229 49.3
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 4.5e-47 192.6 218 45.4
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 5.4e-40 169.1 143 63.6
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 5.6e-37 159.1 175 48.6
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.2e-34 151.4 120 68.3
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 6.4e-33 145.6 110 70.9
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.9e-32 144.1 241 38.2
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 6.0e-31 139.0 217 38.2
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 2.8e-28 130.2 81 81.5
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 8.1e-28 128.6 226 35.4
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.1e-21 108.2 77 74.0
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 1.2e-20 104.8 206 33.0
Lj1A354T50 Lonicera japonica HOM05D002180 ORTHO05D001339 3.1e-19 100.1 61 83.6
Lj5A794T36 Lonicera japonica HOM05D002180 ORTHO05D001339 2.9e-17 93.6 59 79.7
Lj7C629T7 Lonicera japonica HOM05D002180 ORTHO05D001339 3.8e-17 93.2 61 77.0
Lj6C448T6 Lonicera japonica HOM05D002180 ORTHO05D001339 8.4e-17 92.0 61 77.0
Lj6A103G46 Lonicera japonica HOM05D002180 ORTHO05D001339 5.2e-11 72.8 79 51.9
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 5.8e-10 69.3 50 76.0
Lj6P507T14 Lonicera japonica HOM05D002180 ORTHO05D001339 9.9e-10 68.6 48 75.0
Lj6A449T12 Lonicera japonica HOM05D002180 ORTHO05D001339 3.8e-09 66.6 63 58.7
Lj2C149T2 Lonicera japonica HOM05D002180 ORTHO05D001339 5.4e-08 62.8 79 49.4
Lj1A1036T17 Lonicera japonica HOM05D002180 ORTHO05D001339 4.6e-07 59.7 61 55.7
Lju1220C0T1 Lonicera japonica HOM05D002180 ORTHO05D001339 4.6e-07 59.7 37 86.5
Lj8C602G3 Lonicera japonica HOM05D002180 ORTHO05D001339 7.8e-07 58.9 59 54.2
Lju110C5T5 Lonicera japonica HOM05D002180 ORTHO05D001339 1.0e-06 58.5 61 54.1
Lj7C284T2 Lonicera japonica HOM05D002180 ORTHO05D001339 1.7e-06 57.8 77 45.5
Lj8C523G12 Lonicera japonica HOM05D002180 ORTHO05D001339 3.9e-06 56.6 39 71.8
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 3.9e-06 56.6 51 64.7


User provided reference genes

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